Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM184B Gene 0 44.08 39.32 169.84 64.53 55.96 80.46 38.15 102.39 144.62 153.32 68.78 48.76 46.14 129.11 159.98 79.01 76.87 126.92 77.19 79.20 286.18 250.75 244.97 2 361906 Transcript 0 6.85 6.20 5.84 2.86 5.99 5.36 3.09 3.99 6.85 5.78 2.90 1.65 3.13 3.65 5.94 2.37 0.00 0.00 1.52 3.40 7.10 6.10 3.04 3 436674 Transcript 0 0.00 0.00 2.28 0.00 0.00 0.00 0.00 10.97 5.09 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.75 43.43 8.88 4.27 4 466117 Transcript 0 5.00 0.04 10.90 3.22 5.81 0.00 6.45 8.64 7.36 6.76 0.86 0.00 0.00 1.28 6.05 5.94 0.00 10.93 0.00 9.14 14.16 2.22 25.99 5 457534 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 411679 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.70 0.00 0.00 7 361684 Transcript 0 0.33 1.96 6.58 2.65 3.30 6.97 0.81 3.63 4.93 10.31 0.30 0.00 0.00 2.12 0.63 2.71 0.51 4.87 1.96 3.03 5.30 3.91 0.90 8 447109 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 403210 Transcript 0 2.21 1.49 2.99 1.70 1.57 2.58 1.08 1.96 1.78 2.78 0.31 0.00 0.00 0.37 1.53 2.41 0.00 2.25 1.28 2.80 6.53 1.84 4.12 10 464059 Transcript 0 0.00 0.00 1.39 0.55 0.00 0.00 0.70 2.70 0.49 0.90 0.00 0.00 0.00 0.35 0.54 1.56 0.00 0.00 0.00 1.68 0.52 0.00 0.77 11 474416 Transcript 0 4.63 1.79 2.51 1.39 4.20 4.49 1.80 5.33 14.67 5.06 0.73 0.00 0.00 1.46 0.00 4.61 2.67 2.36 2.80 0.95 2.58 4.92 13.82 12 488844 Transcript 0 4.97 2.41 9.30 4.43 4.31 2.69 4.42 11.98 13.19 6.96 2.32 3.00 2.70 6.33 15.76 3.96 1.15 17.24 5.69 3.54 15.22 11.41 18.26 13 IG20 Intergenic 0 5.31 19.59 17.66 21.24 14.02 7.74 8.75 15.16 15.09 10.53 1.83 3.87 2.39 2.20 4.64 4.19 3.34 22.74 10.51 9.14 3.38 3.29 19.00 14 IG20_SR3 SilentIntergenicRegion 0 3.81 15.94 16.09 16.89 10.39 7.98 8.49 12.62 12.02 9.68 1.74 3.83 2.24 2.37 5.77 4.33 3.82 18.36 11.15 11.00 3.13 2.83 22.00 15 IG20_AR4 ActiveIntergenicRegion 0 9.42 36.14 33.08 49.91 37.24 18.54 21.05 39.79 33.84 24.04 4.75 6.50 6.12 5.55 7.74 9.96 6.90 64.31 23.99 16.92 6.97 5.55 32.73 16 IG20_SR2 SilentIntergenicRegion 0 6.81 22.53 17.85 22.51 14.65 6.09 7.23 14.35 16.09 9.76 1.52 3.38 2.06 1.56 3.32 3.32 2.45 20.86 8.23 6.48 3.19 3.75 14.80 17 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.59 0.95 0.00 0.00 0.96 0.00 0.00 0.00 3.05 0.00 0.36 0.00 0.00 0.00 0.43 5.29 0.00 1.88 18 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 1.32 0.00 0.00 2.29 1.55 0.00 0.00 6.17 0.00 2.97 0.00 0.00 0.00 2.13 8.81 0.83 5.87 19 ER1c ExonRegion 0 25.11 8.23 9.58 0.06 24.00 63.09 30.53 1.16 7.41 9.95 24.98 3.23 0.00 25.70 49.36 24.31 30.94 8.08 47.35 10.13 81.08 113.26 130.83 20 E1_Ad KnownBoundary 0 10.52 5.00 27.88 0.00 12.14 39.58 12.45 9.20 18.03 21.89 2.32 6.00 0.00 9.18 14.09 15.12 13.18 7.83 7.91 12.46 40.16 25.96 55.83 21 ER1d ExonRegion 0 8.47 4.86 17.52 4.29 8.08 29.71 4.58 9.15 15.48 14.32 5.15 8.34 9.47 12.75 20.36 9.63 15.53 13.72 2.12 9.77 28.32 14.93 37.85 22 E1a_E3a KnownJunction 1 12.97 2.57 18.78 8.69 11.88 26.01 7.11 27.97 27.69 26.54 4.95 20.11 53.89 25.78 13.85 18.54 35.44 26.53 8.56 17.39 43.80 13.35 35.25 23 ER2a ExonRegion 0 0.65 1.35 7.65 1.70 3.13 5.59 1.63 3.28 3.98 9.38 0.59 0.00 0.00 1.53 1.26 1.24 1.01 3.53 3.91 3.06 5.04 4.71 1.80 24 E2a_E3a KnownJunction 0 0.00 2.57 5.50 3.60 3.48 8.35 0.00 3.98 5.87 11.23 0.00 0.00 0.00 2.71 0.00 4.19 0.00 6.22 0.00 3.00 5.56 3.12 0.00 25 I2_SR4 SilentIntronRegion 0 13.76 19.28 11.05 9.49 17.00 6.83 10.08 4.87 8.37 5.25 0.00 0.00 0.00 5.05 4.30 6.16 5.87 2.22 18.76 7.96 1.96 2.97 11.09 26 ER3a ExonRegion 1 6.43 3.80 37.89 12.63 14.24 23.53 8.32 48.76 54.65 79.35 47.26 25.57 28.32 58.93 59.61 26.19 62.78 59.65 36.06 28.42 221.41 82.95 90.76 27 E3_Ab KnownBoundary 1 23.04 0.00 64.69 21.28 19.69 35.83 12.41 74.88 101.65 136.92 98.87 24.61 39.93 95.77 120.16 47.68 119.87 72.63 66.35 55.99 356.02 123.75 134.53 28 ER3b ExonRegion 0 17.58 18.31 113.27 37.86 26.68 60.12 33.00 97.59 138.41 184.59 83.17 69.86 60.35 149.63 187.85 67.70 101.44 124.54 81.64 100.01 379.07 224.26 243.19 29 E3a_E4a KnownJunction 0 0.00 0.00 3.05 2.06 0.00 0.00 2.25 0.00 1.79 0.00 5.26 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.38 8.39 0.00 30 E3a_E5a KnownJunction 0 26.45 73.08 160.52 63.06 62.73 155.48 70.26 98.62 158.97 235.39 147.04 99.33 107.46 215.73 181.22 95.10 112.67 155.04 89.04 108.79 563.29 246.95 270.52 31 E3a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER4a ExonRegion 0 3.55 0.00 9.50 3.80 0.00 3.14 2.05 13.61 11.76 7.05 1.33 1.35 0.00 1.20 6.20 3.20 2.10 12.75 2.79 3.48 61.10 18.52 22.94 33 E4_Da KnownBoundary 0 6.15 0.00 8.96 5.66 0.00 2.73 2.12 12.61 13.72 13.43 0.00 0.00 0.00 2.47 6.30 4.27 0.00 14.38 8.85 10.61 45.72 18.92 21.51 34 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.70 0.00 0.00 35 E4_Db KnownBoundary 0 10.30 0.00 13.10 4.13 0.00 0.00 8.30 7.60 6.68 7.09 2.68 0.00 0.00 0.00 0.00 12.22 0.00 8.75 0.00 5.94 15.01 2.69 23.05 36 E4b_E5a KnownJunction 0 0.00 0.00 2.28 0.00 0.00 0.00 0.00 10.97 5.09 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.75 43.43 8.88 4.27 37 ER4b ExonRegion 0 5.85 0.00 16.45 5.45 0.00 1.48 4.54 19.92 17.06 13.87 2.12 2.47 0.00 1.93 2.90 10.61 0.00 17.69 4.85 10.13 58.14 17.66 30.07 38 ER4c ExonRegion 0 5.00 0.04 10.90 3.22 5.81 0.00 6.45 8.64 7.36 6.76 0.86 0.00 0.00 1.28 6.05 5.94 0.00 10.93 0.00 9.14 14.16 2.22 25.99 39 ER4d ExonRegion 0 0.38 2.22 7.91 0.00 7.42 1.17 1.08 4.87 3.54 2.55 1.05 0.00 0.00 1.62 3.96 0.81 0.00 3.36 0.58 4.84 8.61 3.69 5.07 40 ER4e ExonRegion 0 4.42 2.98 5.99 3.40 3.14 5.16 2.16 3.91 3.56 5.57 0.62 0.00 0.00 0.73 3.07 4.82 0.00 4.50 2.56 5.60 13.06 3.67 8.23 41 E4d_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E5_Aa NovelBoundary 0 9.48 13.16 9.76 8.56 21.22 50.99 24.20 11.71 20.72 8.46 48.96 6.00 6.49 18.72 14.59 20.51 27.21 9.37 20.61 21.16 162.17 77.03 78.36 43 ER5a ExonRegion 0 49.57 64.18 245.60 78.50 63.64 108.00 50.38 143.00 223.38 266.38 152.98 158.00 111.94 258.09 257.46 140.21 145.06 221.54 126.70 153.90 611.24 401.00 366.28 44 E5a_E7b NovelJunction 0 0.00 2.83 2.81 9.52 0.00 0.00 0.00 6.24 10.33 3.25 2.68 0.00 12.82 7.24 8.90 0.00 8.32 3.90 4.52 14.19 16.49 13.59 19.38 45 E5a_E7c KnownJunction 1 28.82 99.39 291.56 92.00 132.17 179.10 75.74 164.26 245.54 262.87 129.30 111.19 193.82 288.54 252.55 118.35 138.94 199.10 95.44 167.34 561.93 476.15 443.38 46 I5_AR2 ActiveIntronRegion 0 13.00 4.07 11.70 7.59 7.14 9.06 8.84 20.63 22.61 15.06 0.26 4.11 10.83 1.56 8.50 5.16 7.49 20.00 15.31 9.94 6.77 5.01 29.01 47 ER6a ExonRegion 0 0.00 0.00 2.78 1.10 0.00 0.00 1.39 5.40 0.98 1.80 0.00 0.00 0.00 0.70 1.08 3.13 0.00 0.00 0.00 3.36 1.05 0.00 1.54 48 E6a_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER7a ExonRegion 0 4.63 1.79 2.51 1.39 4.20 4.49 1.80 5.33 14.67 5.06 0.73 0.00 0.00 1.46 0.00 4.61 2.67 2.36 2.80 0.95 2.58 4.92 13.82 50 E7_Ab KnownBoundary 0 0.00 0.00 5.03 0.00 8.66 8.52 0.00 4.85 23.15 9.03 2.68 0.00 0.00 0.00 0.00 0.00 0.00 6.72 0.00 3.26 6.12 6.12 25.78 51 ER7b ExonRegion 0 1.43 6.29 15.93 13.96 8.32 9.71 5.34 13.22 34.07 16.94 7.20 6.06 3.61 7.82 9.51 6.40 9.24 32.44 7.55 6.97 36.38 36.57 18.88 52 E7_Ac KnownBoundary 0 0.00 0.00 14.31 18.75 12.65 14.20 6.18 11.50 22.25 9.86 12.27 12.60 0.00 2.41 5.69 11.28 9.35 28.27 4.80 6.07 14.52 19.17 8.62 53 E7_Ad KnownBoundary 0 24.08 70.18 235.53 71.25 141.60 149.63 74.19 132.46 212.73 183.55 129.45 97.98 130.35 199.01 108.78 98.35 82.75 122.58 61.84 128.22 399.27 404.08 249.00 54 ER7c ExonRegion 1 27.25 84.01 294.93 101.53 167.07 215.47 76.13 171.33 279.06 266.23 168.52 148.55 209.88 294.47 222.31 141.55 146.68 229.47 103.72 170.74 610.84 523.22 425.63 55 ER7d ExonRegion 1 38.44 67.85 316.03 129.68 164.16 181.84 83.79 202.67 307.39 305.84 185.11 213.90 232.35 302.26 240.65 205.20 119.64 301.78 167.15 169.58 596.19 613.31 552.68 56 E7a_E8a KnownJunction 0 62.31 78.60 357.35 163.42 213.16 189.15 84.04 244.88 345.19 344.05 200.89 237.98 242.19 323.62 311.64 286.76 159.23 426.85 294.78 165.48 629.70 849.80 782.35 57 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER8a ExonRegion 0 29.63 62.66 339.75 149.31 150.73 171.36 77.72 253.89 331.19 353.54 195.15 237.48 238.67 350.99 325.05 295.01 194.63 448.93 238.19 179.59 641.03 779.54 713.50 59 ER8b ExonRegion 0 21.94 57.36 374.41 131.81 95.40 138.73 84.65 268.47 366.93 365.11 232.22 264.27 204.16 377.19 396.35 266.22 194.89 401.68 293.44 267.35 793.56 839.40 918.21 60 E8b_E9a KnownJunction 0 27.26 59.79 453.24 137.41 70.12 131.12 67.92 259.34 395.42 367.26 285.07 253.73 154.05 349.46 389.52 264.29 195.42 337.06 345.52 271.33 842.58 949.18 887.43 61 ER9a ExonRegion 0 20.45 41.14 325.82 113.30 58.23 80.49 45.50 205.99 314.40 302.51 149.67 148.66 164.30 246.76 231.37 117.72 121.42 202.59 145.04 155.80 495.83 518.73 419.30 62 E9_Da KnownBoundary 0 8.96 0.00 10.76 5.66 10.87 4.49 8.39 27.23 28.99 18.35 4.79 6.30 0.00 4.94 41.54 4.36 0.00 19.81 17.60 8.82 20.26 27.37 19.29 63 E9a_E10a KnownJunction 1 49.19 77.82 266.31 106.21 84.72 119.59 40.23 169.02 263.86 255.81 124.77 187.11 222.06 256.87 243.40 133.64 146.14 286.86 144.00 119.46 453.57 552.14 481.19 64 ER9b ExonRegion 0 7.80 5.65 23.32 8.99 4.98 8.59 5.65 22.03 25.33 15.07 5.28 5.87 3.28 9.80 22.48 8.67 3.81 29.62 15.45 9.43 19.29 24.34 28.71 65 E9_Db KnownBoundary 0 6.15 5.66 28.95 12.19 3.31 15.96 2.08 28.22 27.55 18.72 9.16 0.00 0.00 14.36 14.59 4.36 0.00 29.43 24.57 5.11 25.95 22.78 19.63 66 ER9c ExonRegion 0 9.94 4.83 18.59 8.87 8.63 5.38 8.84 23.96 26.38 13.92 4.64 5.99 5.40 12.67 31.53 7.91 2.31 34.48 11.39 7.08 30.45 22.81 36.51 67 I9 Intron 0 18.96 4.71 22.13 13.70 14.66 19.90 10.32 32.84 31.42 22.15 11.20 2.63 9.74 13.27 24.34 12.53 6.61 35.11 11.75 11.88 38.31 28.10 36.51 68 I9_SR1 SilentIntronRegion 0 18.99 4.72 22.17 13.72 14.69 19.94 10.34 32.91 31.48 22.20 11.23 2.64 9.76 13.30 24.39 12.55 6.62 35.19 11.77 11.91 38.38 28.16 36.59 69 E10_Aa NovelBoundary 0 24.37 0.00 51.92 14.72 6.88 2.73 6.58 30.27 42.36 18.64 9.00 6.00 6.01 6.95 23.61 8.12 8.98 36.52 36.33 20.26 31.69 17.27 35.68 70 ER10a ExonRegion 0 90.90 91.48 264.98 91.28 132.23 197.78 70.78 211.34 276.48 261.45 168.95 151.71 199.33 252.00 262.68 200.22 184.67 360.54 183.59 167.45 666.92 608.13 660.31 71 E10_Da KnownBoundary 0 226.63 155.56 351.55 139.68 178.78 338.84 112.97 306.95 348.93 346.33 212.42 149.75 185.70 353.23 360.34 281.98 237.12 401.81 294.31 235.09 721.68 877.11 905.36 72 ER10b ExonRegion 0 71.39 81.15 250.42 89.03 102.90 177.71 79.01 173.03 229.55 248.91 130.73 136.38 150.96 266.90 279.34 144.18 146.44 211.91 155.25 150.15 562.75 461.89 466.47 73 E10b_E11a KnownJunction 1 47.49 63.08 254.19 91.03 120.12 162.35 65.54 162.45 207.61 206.41 82.86 70.22 116.06 253.05 200.26 137.40 127.54 240.80 131.39 130.39 555.13 253.51 346.66 74 ER11a ExonRegion 0 24.87 41.54 205.22 68.26 45.80 106.57 43.60 122.62 163.34 187.54 110.45 109.84 107.27 210.24 225.20 117.71 125.72 170.56 106.05 113.02 467.72 315.74 378.30 75 E11_Da NovelBoundary 0 3.78 11.71 41.81 11.42 47.62 41.62 9.54 27.15 44.82 48.27 2.68 11.55 13.15 20.07 13.85 10.94 4.11 67.32 18.82 21.99 42.63 29.94 34.91 76 E11a_E12a KnownJunction 0 24.23 9.34 86.54 36.03 31.49 18.57 14.93 61.86 33.80 21.52 94.76 88.98 58.92 193.36 250.70 104.33 110.61 12.19 32.57 0.00 412.43 280.39 295.27 77 I11 Intron 0 13.46 13.42 48.06 24.20 14.98 25.65 13.23 28.58 38.18 40.36 10.12 5.11 4.32 17.84 19.99 15.74 11.52 49.57 25.82 22.54 41.99 35.74 45.66 78 I11_AR1 ActiveIntronRegion 0 7.61 12.65 31.55 23.02 18.49 30.67 15.37 28.12 36.12 29.05 6.95 8.10 5.91 14.75 14.20 13.15 11.41 38.72 29.50 22.35 34.39 26.49 39.37 79 I11_AR2 ActiveIntronRegion 0 14.48 13.58 50.98 24.46 14.40 24.84 12.88 28.71 38.62 42.38 10.69 4.62 4.06 18.40 21.02 16.22 11.57 51.53 25.24 22.62 43.36 37.39 46.83 80 E12_Aa NovelBoundary 0 17.04 17.37 44.53 16.35 14.94 7.78 13.03 27.11 16.84 25.44 5.21 6.30 6.82 7.18 35.23 0.00 7.95 49.58 16.85 11.25 47.20 20.21 20.49 81 ER12a ExonRegion 0 36.18 31.94 214.94 77.39 50.36 89.42 41.50 112.24 190.30 213.39 99.79 74.64 72.29 169.64 208.65 96.31 110.70 127.75 84.94 112.93 411.94 264.28 282.91 82 E12_Da KnownBoundary 0 41.12 45.85 248.66 98.02 45.84 156.39 54.36 114.39 233.76 214.36 98.97 29.11 51.94 193.24 219.54 113.82 134.55 190.11 95.25 113.26 452.58 352.95 358.53 83 ER12b ExonRegion 0 70.99 56.06 230.31 91.08 78.57 104.68 49.92 130.24 181.22 189.93 72.48 31.91 28.67 147.84 203.83 93.18 89.27 150.69 90.53 89.94 314.13 306.38 287.48 84 E12_Db KnownBoundary 1 78.90 49.73 48.90 37.39 53.99 36.34 26.85 41.61 56.34 41.72 13.21 12.00 59.57 27.90 48.33 16.41 12.06 0.00 8.47 19.11 22.05 90.56 27.06 85 ER12c ExonRegion 1 33.34 20.67 25.63 15.11 22.74 13.60 9.60 22.33 38.49 27.24 8.38 5.05 31.27 8.93 29.01 10.40 0.00 0.00 5.57 10.64 15.98 38.20 13.70 86 ER12d ExonRegion 0 13.71 12.40 11.67 5.71 11.98 10.13 5.23 7.98 13.70 10.60 5.80 3.30 6.25 4.25 11.88 4.39 0.00 0.00 3.03 6.38 8.92 12.20 4.20 87 IG19 Intergenic 0 3.99 6.17 5.74 2.63 3.17 1.29 3.09 3.53 5.65 1.51 0.72 0.66 1.03 1.12 2.55 1.21 2.20 2.17 2.83 2.83 6.12 4.24 15.00 88 IG19_SR1 SilentIntergenicRegion 0 4.00 6.18 5.75 2.63 3.17 1.29 3.09 3.53 5.66 1.51 0.72 0.66 1.03 1.12 2.56 1.21 2.20 2.18 2.83 2.84 6.13 4.25 15.02