Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TCN2 Gene 0 57.05 14.42 51.96 52.72 33.66 15.01 16.44 43.17 54.39 34.42 0.06 2.93 13.83 15.53 25.53 7.91 51.98 26.21 21.23 26.31 64.03 14.70 16.84 2 215838 Transcript 0 1.16 4.30 11.65 7.90 1.73 3.80 3.42 4.82 6.24 5.31 0.00 0.00 1.43 1.04 2.01 2.87 4.61 5.86 8.36 9.58 4.92 1.33 2.61 3 423350 Transcript 0 0.00 0.00 2.38 1.28 0.00 0.00 0.00 0.00 0.56 0.04 0.00 0.00 0.00 0.03 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 4 450638 Transcript 0 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.47 0.00 0.00 0.00 0.00 0.00 5 405742 Transcript 0 0.00 0.00 0.00 1.27 8.49 0.00 0.00 2.42 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 0.00 0.00 6 407817 Transcript 0 0.00 0.00 0.00 1.83 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.42 4.81 0.00 0.00 0.00 0.00 0.00 7 471659 Transcript 0 3.10 2.97 6.25 12.35 4.81 3.64 6.33 6.03 5.14 9.36 0.00 0.00 3.55 1.36 0.47 0.99 3.12 10.80 6.49 12.35 2.62 1.46 2.98 8 493542 Transcript 0 7.15 3.90 7.57 7.78 7.22 2.79 8.25 11.00 7.07 8.67 0.00 0.00 1.85 0.98 1.68 1.67 7.18 6.32 1.66 9.20 2.64 0.15 2.81 9 ER1a ExonRegion 0 1.30 1.87 6.98 3.32 0.82 3.38 1.63 2.01 1.40 3.97 0.00 0.00 0.14 0.28 1.89 3.65 1.99 6.21 3.91 6.10 1.90 1.68 3.96 10 E1_Ab KnownBoundary 0 0.00 0.00 3.67 0.00 0.00 0.00 4.50 6.90 2.89 11.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 0.00 8.15 6.25 4.27 11 ER1b ExonRegion 0 3.02 0.25 10.94 7.10 0.00 0.50 0.00 8.66 2.08 12.54 0.00 0.00 2.17 0.26 0.54 1.75 5.53 5.34 6.09 7.98 5.89 1.82 5.54 12 E1_Ac KnownBoundary 0 9.63 2.63 21.14 8.12 0.00 2.21 0.00 12.03 3.85 13.91 0.00 0.00 0.00 0.00 4.45 8.03 8.88 17.58 9.60 17.77 5.19 5.39 11.69 13 ER1c ExonRegion 0 4.85 3.45 21.12 5.57 31.37 16.64 8.67 8.54 3.85 11.88 0.00 0.00 0.00 0.00 5.05 8.96 6.79 20.24 19.02 12.58 12.46 1.96 6.17 14 E1_Ad KnownBoundary 0 6.89 3.29 10.53 3.80 43.46 12.38 18.02 6.16 1.10 11.95 0.00 0.00 0.00 0.00 0.00 0.00 4.58 15.50 9.60 8.76 14.58 2.69 11.95 15 ER1d ExonRegion 0 21.61 2.07 8.46 4.80 31.85 18.73 14.77 12.83 9.14 13.90 0.00 3.50 0.00 2.37 2.73 1.83 7.24 11.97 8.82 14.73 26.06 3.13 11.69 16 E1_Ae KnownBoundary 0 80.90 5.79 19.19 7.92 68.68 35.15 19.96 20.37 21.67 23.10 0.00 0.00 0.00 0.00 8.90 6.92 11.97 16.33 9.04 21.41 40.83 7.41 19.38 17 ER1e ExonRegion 0 46.39 7.12 41.95 29.98 22.02 15.97 11.47 36.46 43.76 38.83 0.00 2.58 3.83 10.24 15.75 10.33 35.88 25.10 16.48 23.62 73.15 10.90 20.48 18 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1a_E3a KnownJunction 0 18.89 5.85 65.23 41.45 21.48 5.34 2.12 52.41 73.78 48.03 0.00 6.30 6.33 10.36 13.60 4.36 27.40 44.19 25.41 45.25 83.46 26.58 33.89 20 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 1.90 1.41 0.00 0.00 0.00 0.00 0.00 21 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3a ExonRegion 0 32.64 9.89 65.88 48.94 36.99 25.30 18.67 42.86 61.11 34.25 0.00 3.10 3.57 19.01 39.57 11.70 55.67 41.83 20.22 40.05 82.11 16.64 25.44 23 E3_Da KnownBoundary 0 0.00 0.00 6.45 8.06 0.00 0.00 0.00 2.42 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 24 E3a_E4a KnownJunction 0 40.38 14.80 63.69 50.74 28.52 51.05 16.83 47.56 72.31 33.74 0.00 0.00 0.00 13.66 55.26 7.69 70.41 40.58 17.13 55.86 60.29 11.45 20.49 25 E3a_E4b KnownJunction 0 0.00 0.00 0.00 1.27 8.49 0.00 0.00 2.42 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 0.00 0.00 26 ER3b ExonRegion 0 0.00 0.00 2.38 1.28 0.00 0.00 0.00 0.00 0.56 0.04 0.00 0.00 0.00 0.03 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 27 ER4a ExonRegion 0 41.19 9.23 55.24 50.64 24.70 42.18 17.72 48.66 68.79 34.58 0.00 0.00 0.00 19.74 33.03 5.94 74.40 32.41 15.68 46.81 67.47 14.10 16.04 28 ER4b ExonRegion 0 37.96 17.55 56.45 61.85 20.56 22.25 14.74 43.03 62.37 41.77 0.00 1.08 4.75 25.64 30.42 3.87 77.35 43.50 18.19 34.91 95.54 17.96 15.42 29 E4_Da KnownBoundary 0 57.71 45.19 78.59 70.19 26.23 19.36 22.61 28.22 55.67 39.78 0.00 6.30 6.17 33.49 63.17 0.00 84.34 39.13 12.24 49.60 96.56 13.66 12.55 30 E4a_E5a KnownJunction 0 0.00 0.00 0.00 1.83 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.42 4.81 0.00 0.00 0.00 0.00 0.00 31 ER4c ExonRegion 0 69.09 17.80 62.06 62.88 28.94 12.97 21.18 50.49 65.95 48.24 0.00 5.51 6.77 29.09 43.48 5.98 69.03 26.44 23.36 29.79 83.99 20.53 25.78 32 E4_Db NovelBoundary 0 14.08 3.16 27.14 4.99 4.33 0.00 2.25 6.12 12.27 7.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.61 4.80 8.37 5.62 0.00 0.00 33 E4b_E5a KnownJunction 0 161.21 12.76 59.99 84.77 65.70 20.16 24.78 94.51 96.30 56.71 0.00 0.00 6.66 23.84 71.33 16.06 87.98 34.20 55.25 39.69 105.95 14.57 63.60 34 Ix Intron 0 7.41 4.24 20.31 7.36 2.63 1.24 3.42 2.22 7.92 2.94 0.00 0.22 2.15 0.39 1.34 0.37 4.67 6.66 3.52 5.36 1.49 0.38 1.08 35 Ix_SR1 SilentIntronRegion 0 3.91 3.29 19.38 5.16 1.85 1.69 2.14 1.19 7.22 2.37 0.00 0.00 0.00 0.57 0.67 0.00 1.52 7.00 2.94 2.45 2.03 0.48 1.36 36 Ix_SR2 SilentIntronRegion 0 8.71 4.60 20.71 8.19 2.92 1.08 3.89 2.60 8.20 3.16 0.00 0.30 2.94 0.32 1.59 0.50 5.82 6.56 3.75 6.44 1.30 0.35 0.99 37 E5_Aa NovelBoundary 0 7.26 6.12 19.99 7.16 16.04 0.00 2.25 2.18 9.78 4.22 0.00 6.30 0.00 0.00 0.00 0.00 0.00 10.53 9.32 8.50 0.00 0.00 0.00 38 ER5a ExonRegion 0 69.37 24.07 63.28 90.86 50.58 25.37 22.88 61.41 82.38 47.99 0.00 1.78 16.22 28.30 43.29 9.98 87.48 39.23 33.71 31.43 113.99 22.51 29.12 39 E5a_E6a KnownJunction 0 84.09 18.81 60.73 92.20 55.01 42.19 38.51 85.56 95.31 54.99 0.00 6.30 6.49 18.72 47.72 3.85 64.70 25.54 51.86 27.36 150.30 19.53 19.04 40 ER6a ExonRegion 0 120.68 28.92 82.23 105.13 52.40 23.14 28.46 79.37 107.21 62.07 0.00 4.83 20.71 30.18 51.47 11.68 109.10 55.33 41.06 36.29 135.22 23.56 38.06 41 E6a_E7a KnownJunction 0 184.70 39.93 86.34 126.59 46.60 23.40 44.07 103.26 95.95 73.28 0.00 0.00 6.66 38.50 61.44 14.18 99.77 44.19 64.00 53.95 148.27 27.31 41.15 42 ER7a ExonRegion 0 156.00 34.11 91.13 84.13 60.84 17.42 28.42 77.52 107.88 68.23 0.00 7.48 23.25 26.76 46.70 7.17 109.83 42.32 40.54 49.24 126.88 26.84 30.48 43 E7_Ab KnownBoundary 0 89.20 42.95 85.57 68.22 91.51 29.98 27.95 55.94 97.77 56.11 0.00 5.55 6.33 21.37 49.57 0.00 107.62 52.31 39.53 60.40 113.92 20.02 24.07 44 E7_Ac KnownBoundary 0 133.43 40.78 89.62 109.08 102.72 58.83 48.05 70.36 111.98 50.93 0.00 6.30 19.64 35.26 70.59 4.36 139.41 40.71 37.08 36.75 136.96 22.78 32.35 45 ER7b ExonRegion 0 95.68 43.72 121.46 113.91 98.56 51.96 38.95 80.23 139.77 68.62 0.00 5.23 23.65 28.90 58.75 3.84 146.61 65.60 39.15 53.90 150.68 22.83 31.94 46 ER7c ExonRegion 0 133.01 37.86 98.58 112.62 103.49 38.23 47.55 83.79 113.30 63.23 0.14 6.22 33.29 36.97 50.26 16.33 99.21 54.57 34.99 48.94 132.22 37.00 24.36 47 E7a_E8a KnownJunction 0 195.00 40.65 94.32 103.98 96.26 19.99 58.29 103.92 115.39 55.82 0.00 0.00 27.60 43.03 17.80 22.39 93.13 50.82 31.34 58.93 149.44 44.03 22.37 48 ER8a ExonRegion 0 155.90 31.04 112.28 113.59 75.23 33.31 36.37 97.92 121.38 68.41 0.92 11.27 45.94 35.78 49.58 18.85 106.92 53.71 46.30 58.54 146.75 42.03 27.30 49 E8_Da KnownBoundary 0 11.11 18.94 13.63 23.31 12.73 2.78 11.22 9.69 9.26 14.56 0.00 0.00 0.00 2.88 0.00 4.36 3.46 33.62 26.64 18.15 8.65 8.70 4.35 50 E8a_E9a KnownJunction 0 125.50 31.05 105.82 135.95 139.64 40.37 57.59 103.84 113.34 53.89 2.58 6.30 41.07 42.62 46.36 19.40 124.73 33.54 46.50 40.97 123.55 45.25 39.95 51 ER8b ExonRegion 0 3.10 2.97 6.25 12.35 4.81 3.64 6.33 6.03 5.14 9.36 0.00 0.00 3.55 1.36 0.47 0.99 3.12 10.80 6.49 12.35 2.62 1.46 2.98 52 E8_Db NovelBoundary 0 7.33 9.54 8.69 22.11 11.97 0.00 4.20 12.28 13.08 15.98 0.00 0.00 0.00 2.35 4.45 0.00 4.11 9.16 4.52 2.68 2.35 0.00 8.19 53 E9_Aa NovelBoundary 0 10.00 6.64 9.85 14.25 27.59 2.50 12.54 13.27 7.99 8.76 0.00 0.00 6.17 0.00 0.00 0.00 9.26 10.99 8.47 11.82 2.97 0.00 0.00 54 ER9a ExonRegion 0 191.71 41.22 149.95 155.22 95.36 28.79 46.28 136.77 158.19 81.00 0.30 8.85 59.11 37.83 67.53 31.46 133.86 52.88 64.92 49.98 138.00 56.96 46.13 55 E9_Da KnownBoundary 0 9.26 5.72 12.24 7.42 12.31 5.39 6.32 15.20 11.92 7.23 0.00 0.00 0.00 0.00 0.00 8.03 15.90 9.82 3.76 8.76 0.00 2.82 0.00 56 E9a_E10a KnownJunction 0 139.95 27.10 173.09 160.92 102.04 31.63 54.36 115.58 153.93 74.22 0.00 12.60 73.86 40.97 89.13 28.20 157.55 27.23 44.52 65.00 140.48 52.17 23.99 57 ER9b ExonRegion 0 7.15 3.90 7.57 7.78 7.22 2.79 8.25 11.00 7.07 8.67 0.00 0.00 1.85 0.98 1.68 1.67 7.18 6.32 1.66 9.20 2.64 0.15 2.81 58 E10_Aa NovelBoundary 0 3.19 0.00 6.21 19.61 3.90 0.00 2.25 10.06 7.49 25.28 0.00 0.00 6.66 2.18 4.45 0.00 0.00 11.94 13.18 8.95 0.00 0.00 4.35 59 ER10a ExonRegion 0 75.33 17.03 75.87 75.39 47.20 14.26 17.27 60.20 73.03 46.91 0.00 3.70 24.19 20.94 35.09 8.72 71.32 25.21 23.18 30.03 77.19 17.08 18.43 60 E10_Da KnownBoundary 0 70.83 9.60 31.87 33.00 11.29 10.22 7.20 20.62 34.75 12.06 0.00 7.20 6.17 0.00 8.90 3.33 32.45 15.75 16.28 15.66 13.22 3.00 0.00 61 ER10b ExonRegion 1 61.38 7.79 22.68 26.23 16.38 9.88 5.94 14.92 32.05 8.95 0.00 1.80 1.49 2.77 20.59 2.97 31.56 14.20 18.88 19.41 24.13 0.91 5.01 62 E10_Db KnownBoundary 0 36.90 14.08 4.64 11.42 11.63 12.32 0.00 3.78 15.65 3.06 0.00 0.00 0.00 0.00 14.46 0.00 4.39 6.22 18.45 20.65 32.74 0.00 12.29 63 E10_Dc KnownBoundary 0 0.00 6.38 10.64 17.11 7.56 2.16 9.49 9.16 6.68 4.14 0.00 0.00 0.00 0.00 0.00 0.00 8.70 4.44 4.80 12.21 0.00 0.00 4.27 64 ER10c ExonRegion 1 16.48 7.12 18.64 26.19 8.60 5.76 6.81 12.84 20.47 7.54 0.00 0.00 0.00 0.00 10.57 0.42 13.91 9.77 14.56 21.43 17.94 0.00 8.39 65 ER10d ExonRegion 0 1.01 6.72 16.33 12.49 2.64 4.21 5.21 7.64 11.08 6.64 0.00 0.00 2.71 1.79 2.13 2.09 7.24 5.50 12.81 13.07 7.94 0.97 1.27