Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C22orf46 Gene 0 37.30 22.97 30.45 48.24 26.47 25.76 23.15 27.52 33.12 30.44 26.60 35.16 38.77 46.42 56.63 48.51 44.77 67.52 57.72 43.95 29.43 19.38 23.86 2 472110 Transcript 0 10.42 19.82 7.08 11.30 7.64 11.28 9.36 5.84 13.80 15.63 11.27 8.69 17.23 15.36 36.06 26.26 22.94 28.93 35.26 24.20 19.64 9.92 15.75 3 496125 Transcript 0 4.22 2.05 0.00 0.00 1.83 3.08 3.96 0.00 0.02 0.00 1.96 1.20 5.12 4.57 8.46 8.04 3.32 0.00 4.28 4.28 2.22 0.74 1.95 4 402966 Transcript 0 8.94 8.98 8.12 11.12 9.92 7.20 4.04 13.04 14.34 11.55 12.33 12.41 8.56 20.05 18.43 23.53 24.28 36.55 22.79 20.76 8.57 5.94 6.48 5 356843 Transcript 0 1.89 4.47 6.56 5.14 15.62 3.86 3.38 6.72 11.31 10.37 5.84 2.85 3.33 5.50 4.45 9.78 15.19 15.75 4.14 9.72 13.87 2.76 3.88 6 451377 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 10.70 20.05 7.69 10.18 15.29 12.97 14.44 4.54 8.94 13.29 11.05 11.08 12.70 17.19 26.14 41.33 20.82 35.31 37.48 21.18 17.17 12.00 17.25 8 E1_Da NovelBoundary 0 7.48 2.50 19.78 23.44 0.00 0.00 6.76 22.96 21.64 19.96 0.00 6.30 0.00 7.48 10.63 11.88 8.98 47.34 31.06 9.59 0.00 2.69 11.61 9 E1a_E3d KnownJunction 0 10.15 19.60 6.48 12.42 0.00 9.60 4.28 7.15 18.66 17.97 11.48 6.30 21.75 13.54 45.99 11.19 25.06 22.55 33.04 27.23 22.12 7.84 14.26 10 E2_Aa NovelBoundary 1 3349.93 4032.90 6358.14 6208.83 3417.57 2578.06 3850.63 7161.67 6241.54 6068.92 1920.33 605.30 561.33 600.98 1249.77 3213.77 3341.74 7184.99 3217.13 3888.79 3070.40 2050.28 3860.29 11 ER2a ExonRegion 0 8.44 4.09 0.00 0.00 3.66 6.15 7.93 0.00 0.03 0.00 3.92 2.39 10.24 9.15 16.91 16.07 6.65 0.00 8.55 8.57 4.44 1.48 3.90 12 E2_Da NovelBoundary 0 338.36 441.17 511.90 500.87 297.88 198.41 330.34 594.42 560.82 511.05 107.66 81.18 107.95 60.98 112.24 362.81 296.49 688.29 292.24 346.81 150.55 151.19 412.13 13 E2a_E3d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E3_Aa NovelBoundary 0 3.56 6.45 5.74 10.12 0.00 2.67 6.14 9.20 3.59 9.32 5.32 24.61 6.49 16.60 4.45 8.37 13.00 20.40 12.52 22.05 3.15 5.57 8.02 15 E3_Ab NovelBoundary 0 12.82 0.00 6.74 10.92 7.98 14.48 8.44 10.97 4.22 10.64 2.68 24.46 0.00 12.18 13.85 20.68 4.30 19.90 25.79 26.27 5.19 2.39 0.00 16 ER3a ExonRegion 0 3.05 0.00 0.98 1.31 2.46 3.67 0.11 5.88 1.14 2.80 1.93 3.46 0.00 3.96 6.61 7.37 2.11 2.29 12.10 9.79 0.00 0.75 0.59 17 ER3b ExonRegion 0 5.03 3.20 5.24 10.48 5.66 5.44 3.54 7.31 3.50 8.35 3.42 11.57 7.30 6.74 14.79 13.25 10.39 21.90 17.60 23.16 7.77 1.43 4.19 18 E3_Ac KnownBoundary 0 3.78 2.50 6.95 19.24 8.66 6.81 6.49 4.15 4.34 12.60 2.68 6.30 13.64 4.94 16.32 7.78 7.48 40.87 8.28 16.75 21.50 0.00 0.00 19 ER3c ExonRegion 0 5.44 3.34 8.69 10.54 3.64 4.56 5.13 3.68 4.25 6.47 4.04 2.61 3.07 8.83 9.99 10.36 6.26 34.98 20.50 16.76 8.80 2.22 5.67 20 E3_Ad KnownBoundary 0 3.19 5.53 11.09 10.42 12.22 5.51 5.92 5.01 6.77 8.73 4.58 5.70 6.82 13.89 20.15 14.10 12.44 45.35 13.18 17.64 8.59 0.00 7.77 21 ER3d ExonRegion 0 16.68 21.47 13.04 19.89 16.33 17.25 5.74 10.66 23.78 17.59 22.41 20.77 16.53 47.76 51.34 34.26 46.55 76.73 57.88 50.59 31.30 15.68 16.62 22 E3_Da NovelBoundary 0 3.48 6.58 10.76 8.62 0.00 0.00 11.26 6.24 1.30 1.40 9.95 12.00 6.17 0.00 0.00 0.00 0.00 13.97 4.80 2.81 2.84 0.00 3.76 23 E3a_E4a KnownJunction 0 21.41 15.00 9.76 22.67 0.00 2.33 9.05 14.13 30.44 14.69 25.90 0.00 22.73 53.51 67.50 32.04 57.32 81.79 60.24 47.75 36.76 16.90 22.37 24 ER4a ExonRegion 0 19.93 14.30 16.02 28.05 9.16 6.73 10.60 23.00 33.53 28.70 28.37 36.12 21.04 44.69 46.94 42.40 44.27 79.74 49.61 45.41 43.61 16.31 30.43 25 E4_Da KnownBoundary 0 17.71 22.23 20.76 49.58 11.29 13.46 20.58 35.86 29.46 24.52 27.80 55.22 32.14 34.55 30.90 58.19 39.74 100.36 88.10 49.79 44.54 14.39 31.76 26 ER4b ExonRegion 0 10.13 13.35 17.26 30.05 13.29 13.10 12.01 26.05 34.53 25.22 28.90 23.95 27.39 43.31 42.54 43.32 43.37 73.67 61.11 51.30 41.84 15.43 24.77 27 E4_Db KnownBoundary 0 14.74 2.96 8.81 9.79 7.98 2.90 13.07 6.74 12.70 7.04 19.43 18.31 6.01 14.36 35.97 23.07 30.48 48.13 37.37 34.83 24.03 11.57 12.04 28 E4b_E4b KnownJunction 0 3.78 8.95 13.13 10.29 31.24 7.72 6.76 13.43 22.63 20.74 11.69 5.70 6.66 11.01 8.90 19.57 30.39 31.50 8.28 19.43 27.74 5.51 7.77 29 ER4c ExonRegion 0 9.95 5.94 12.56 11.19 3.78 2.82 12.16 8.54 12.34 10.31 13.51 4.93 8.68 19.10 24.24 19.40 22.65 35.68 31.85 31.62 22.19 5.20 8.13 30 E4_Ab KnownBoundary 0 9.41 18.22 13.60 9.59 0.00 5.39 16.78 6.90 7.70 10.40 9.27 0.00 13.64 16.48 24.11 12.39 42.54 44.23 16.85 31.70 32.62 5.45 12.63 31 ER4d ExonRegion 0 23.02 17.08 16.27 25.42 20.07 21.91 15.42 18.84 32.73 32.14 33.54 17.32 25.21 29.23 38.15 41.76 48.03 68.27 41.25 60.32 56.97 12.34 20.92 32 E4_Dc KnownBoundary 0 33.93 29.73 13.36 32.80 7.98 23.11 15.90 19.39 32.41 28.10 35.75 25.06 33.93 46.62 43.76 49.05 25.81 62.43 48.38 71.27 48.93 21.62 22.88 33 ER4e ExonRegion 1 28.25 18.76 19.51 32.03 24.62 22.73 22.18 22.71 34.01 23.89 30.54 13.89 41.87 49.67 40.14 60.62 43.74 91.08 69.76 52.84 44.58 15.66 19.73 34 E4_Dd KnownBoundary 0 21.63 19.73 13.90 27.44 11.97 33.22 18.55 21.15 45.46 41.74 37.11 6.00 39.61 45.26 42.65 51.78 63.02 77.43 72.66 51.52 33.73 14.45 19.89 35 E4d_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER4f ExonRegion 0 19.55 26.95 22.14 30.68 27.30 17.93 12.03 29.79 41.89 31.86 33.12 33.76 25.68 56.18 48.68 63.22 70.72 107.36 53.07 52.51 25.70 17.06 18.86 37 E4_Ac KnownBoundary 0 35.34 30.65 33.41 48.61 40.07 9.48 23.63 40.38 48.55 22.46 47.38 30.76 19.97 57.92 83.94 55.20 45.35 109.31 79.25 71.97 35.15 18.00 32.95 38 ER4g ExonRegion 0 46.23 26.29 37.23 59.23 31.54 30.98 27.33 32.72 38.13 35.29 29.72 42.35 46.45 52.96 65.92 52.94 50.22 72.52 63.39 47.42 30.48 22.44 26.43 39 ER4h ExonRegion 0 4.23 0.00 1.23 1.36 0.00 0.00 0.00 3.46 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00