Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNRF3 Gene 0 6.76 37.21 25.97 25.58 21.21 18.65 36.72 32.41 21.57 31.48 14.84 2.41 7.18 8.92 9.29 2.51 2.39 35.13 27.97 34.98 14.98 23.64 17.82 2 332811 Transcript 0 5.44 30.67 14.06 16.15 14.81 10.68 23.13 21.01 14.78 25.74 10.35 0.99 2.55 6.28 7.00 1.20 1.32 28.87 20.81 37.83 16.25 14.21 7.99 3 402174 Transcript 0 0.00 0.56 0.50 0.00 0.00 0.00 1.09 0.71 0.00 1.41 0.53 0.00 1.29 0.00 0.69 0.00 0.00 0.03 0.00 2.89 0.58 0.00 0.81 4 406323 Transcript 0 0.08 1.46 0.10 0.22 0.32 0.22 0.64 0.21 0.35 1.24 0.54 0.00 4.31 0.39 0.46 0.00 0.13 1.70 0.64 2.64 0.97 0.25 0.35 5 462485 Transcript 0 2.44 3.65 1.35 1.82 2.17 1.82 3.97 1.74 0.85 1.11 0.80 1.62 2.07 1.06 1.66 3.03 2.11 2.61 1.85 5.90 1.57 1.06 1.31 6 ER1a ExonRegion 0 1.68 4.75 1.20 2.62 1.57 1.66 5.72 6.68 4.11 10.02 4.92 0.00 0.00 5.76 3.13 0.00 1.14 9.57 2.80 23.34 8.67 3.13 5.55 7 E1a_E3b KnownJunction 0 3.78 25.13 2.99 6.93 7.47 4.94 7.77 9.49 10.10 27.83 13.79 0.00 0.00 5.12 9.15 0.00 0.00 42.86 26.45 50.37 25.88 8.39 0.00 8 I1_SR1 SilentIntronRegion 0 2.27 3.99 11.86 4.19 1.88 0.28 4.05 5.31 5.31 4.93 1.31 0.00 0.00 0.41 2.25 0.29 1.01 17.14 6.13 8.64 1.12 0.97 2.22 9 I1_AR2 ActiveIntronRegion 0 3.56 14.94 18.60 16.17 6.85 0.96 18.97 18.55 7.12 9.00 1.17 0.66 2.14 0.26 2.65 0.18 0.00 10.36 9.68 10.09 1.81 0.82 4.20 10 I1_SR2 SilentIntronRegion 0 2.55 14.17 19.70 13.93 6.45 0.00 10.43 7.72 3.90 7.67 1.10 6.64 2.70 0.00 1.19 0.00 0.02 4.39 3.08 4.47 0.77 0.00 2.70 11 I1_AR3 ActiveIntronRegion 0 1.54 16.09 16.92 13.78 8.80 0.35 17.55 8.30 4.78 6.94 0.44 2.54 3.43 0.50 3.04 0.29 0.31 3.22 5.60 8.61 0.42 0.40 4.64 12 I1_SR3 SilentIntronRegion 0 2.25 7.84 9.59 8.63 6.43 1.64 19.52 9.65 6.38 4.01 0.22 0.00 5.29 0.44 2.00 0.17 0.18 1.66 5.16 8.92 0.61 0.70 3.12 13 I1_AR4 ActiveIntronRegion 0 2.35 8.00 5.19 6.02 8.06 2.17 17.50 6.14 6.52 6.80 0.88 2.62 8.50 0.41 1.83 0.00 0.97 2.24 5.23 8.90 1.02 0.55 6.48 14 I1_AR9 ActiveIntronRegion 0 2.29 20.93 6.08 5.79 5.80 0.00 15.56 19.01 5.56 3.54 0.00 0.00 9.38 1.56 2.90 1.73 0.00 6.70 5.44 15.87 1.29 0.00 3.67 15 I1_AR10 ActiveIntronRegion 0 1.13 7.67 4.93 9.48 3.19 3.05 16.48 9.85 5.75 6.94 0.58 0.74 5.63 0.12 1.45 0.61 0.02 10.15 7.33 9.64 0.85 0.22 7.29 16 I1_AR11 ActiveIntronRegion 0 3.21 1.85 2.53 5.66 1.54 0.00 6.46 10.27 3.29 3.13 0.29 0.00 5.40 0.00 2.20 0.00 0.00 7.95 6.56 25.40 1.74 0.00 9.79 17 E2_Aa NovelBoundary 0 0.00 0.00 7.48 0.00 3.82 0.00 25.04 4.64 3.18 2.71 0.00 0.00 0.00 0.00 0.00 4.27 0.00 2.36 0.00 9.14 9.14 0.00 0.00 18 ER2a ExonRegion 0 0.00 1.12 1.00 0.00 0.00 0.00 2.18 1.41 0.00 2.81 1.06 0.00 2.57 0.00 1.37 0.00 0.00 0.06 0.00 5.79 1.16 0.00 1.61 19 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 I2_AR1 ActiveIntronRegion 0 6.20 13.58 7.44 7.92 3.93 1.51 19.79 7.54 4.29 7.84 0.27 1.54 2.76 0.00 1.24 0.41 0.00 5.78 3.94 10.26 1.52 1.43 2.82 21 I2_AR2 ActiveIntronRegion 0 1.06 7.14 3.66 3.06 2.68 0.61 20.37 4.31 1.85 2.86 0.65 0.72 3.18 0.23 1.43 0.00 0.00 2.15 2.13 4.63 1.11 0.00 1.47 22 I2_AR3 ActiveIntronRegion 0 2.83 7.26 3.29 9.97 4.11 2.25 16.43 4.37 5.17 5.73 0.63 1.02 4.35 0.19 1.10 0.00 0.00 3.81 2.76 14.67 1.58 1.51 4.12 23 I2_AR5 ActiveIntronRegion 0 0.00 13.22 2.45 1.36 12.21 0.00 20.69 1.73 1.24 4.44 0.00 0.00 4.69 0.00 0.00 0.00 3.30 6.35 1.79 8.51 0.00 0.00 7.71 24 I2_SR6 SilentIntronRegion 0 1.65 6.96 1.37 5.12 3.40 1.52 17.25 4.32 2.46 4.14 0.41 0.79 3.22 0.61 1.16 0.25 0.00 3.96 2.99 8.66 0.93 0.44 2.46 25 I2_AR7 ActiveIntronRegion 0 1.57 6.12 3.87 9.25 6.01 1.32 20.87 4.89 4.18 2.76 1.27 0.94 3.06 0.28 1.31 0.39 0.00 5.12 4.02 9.53 0.58 1.38 2.99 26 I2_AR8 ActiveIntronRegion 0 3.32 13.74 5.72 6.88 7.82 1.00 20.25 3.85 1.15 3.27 0.67 0.90 3.47 0.14 2.70 0.00 0.00 1.97 2.32 7.47 0.69 1.90 2.44 27 I2_AR9 ActiveIntronRegion 0 0.00 0.00 0.00 6.81 10.70 0.00 7.94 8.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.51 11.02 0.00 0.00 28 ER3a ExonRegion 0 0.08 1.46 0.10 0.22 0.32 0.22 0.64 0.21 0.35 1.24 0.54 0.00 4.31 0.39 0.46 0.00 0.13 1.70 0.64 2.64 0.97 0.25 0.35 29 ER3b ExonRegion 0 2.08 15.41 14.85 12.46 7.90 11.24 16.42 19.39 11.86 36.05 16.87 3.88 11.71 13.50 12.44 0.02 3.86 48.37 31.06 54.03 21.37 19.52 19.15 30 E3_Da NovelBoundary 0 0.00 9.01 0.00 2.06 8.32 0.00 21.24 9.08 3.15 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.08 4.61 11.70 3.15 0.00 7.68 31 E3a_E6a KnownJunction 0 0.00 15.46 16.44 25.30 3.48 2.61 2.25 22.55 17.19 49.35 12.16 12.60 6.66 14.42 24.11 0.00 0.00 94.47 41.98 64.17 20.32 14.70 23.05 32 I3_AR2 ActiveIntronRegion 0 2.40 12.05 4.21 9.02 6.46 0.25 16.50 8.03 3.56 4.42 0.77 0.35 2.42 0.44 2.29 0.36 0.53 4.62 4.08 11.42 2.69 0.36 5.36 33 Ix_AR1 ActiveIntronRegion 0 2.46 14.37 5.68 16.75 8.22 1.06 13.56 13.60 5.94 7.23 0.56 1.58 2.35 0.39 1.77 0.00 0.00 12.61 5.28 9.02 2.41 1.65 5.70 34 Ix_SR2 SilentIntronRegion 0 2.57 17.50 8.44 16.35 8.85 1.37 19.22 10.51 4.42 6.61 0.09 0.41 3.03 0.25 1.43 0.00 0.00 5.88 3.13 8.34 1.10 0.78 3.83 35 Ix_AR2 ActiveIntronRegion 0 2.05 13.19 8.39 12.79 8.44 2.78 17.27 9.27 6.11 6.02 0.79 0.00 1.14 0.31 1.02 0.00 0.00 4.97 3.96 11.39 1.52 1.36 5.00 36 Ix_SR5 SilentIntronRegion 0 0.30 4.52 5.43 4.17 3.93 0.00 6.19 4.83 3.88 2.15 0.00 0.00 3.73 0.00 1.84 0.00 0.00 8.60 1.17 4.73 2.29 0.00 10.37 37 Ix_SR7 SilentIntronRegion 0 0.75 23.20 5.86 15.68 7.26 0.00 15.71 8.36 4.90 8.08 0.75 0.00 7.05 1.36 0.00 0.00 0.00 2.39 2.47 10.28 0.00 0.00 5.30 38 Ix_AR8 ActiveIntronRegion 0 1.49 13.78 8.42 9.67 4.03 8.76 17.04 6.95 6.77 6.65 0.32 0.00 2.37 0.00 2.80 0.00 1.98 5.02 6.11 13.14 0.00 0.00 2.14 39 ER4a ExonRegion 0 0.04 0.08 0.07 0.03 0.15 0.04 0.00 0.07 0.12 0.09 0.00 0.00 0.09 0.00 0.06 0.00 0.00 0.14 0.06 6.22 0.04 0.00 0.00 40 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E5_Aa NovelBoundary 0 1169.76 786.90 738.94 906.48 740.24 529.13 1026.12 950.37 729.16 753.26 180.57 124.09 115.41 84.94 234.01 797.06 440.67 857.75 769.06 769.31 387.59 349.89 684.27 42 ER5a ExonRegion 0 9.71 14.51 5.34 7.25 8.51 7.24 15.88 6.89 3.27 4.34 3.20 6.49 8.18 4.25 6.59 12.13 8.43 10.30 7.34 17.38 6.22 4.26 5.26 43 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER6a ExonRegion 0 2.48 7.43 16.09 19.33 3.60 5.21 8.30 32.08 23.10 50.68 35.18 3.23 5.88 18.45 6.50 1.98 0.00 77.90 59.63 54.27 24.09 24.89 34.57 45 E6a_E7a KnownJunction 0 3.33 13.09 17.00 20.24 7.30 17.38 22.88 35.94 17.65 56.25 18.95 0.00 0.00 21.37 8.90 0.00 0.00 55.46 46.12 32.66 24.71 45.50 39.78 46 ER7a ExonRegion 0 0.77 14.73 15.63 21.64 4.44 17.18 20.86 37.44 16.00 41.99 18.10 1.27 0.34 22.86 13.87 0.00 3.14 70.21 42.34 34.98 28.06 40.65 32.16 47 E7_Da KnownBoundary 0 0.00 24.54 18.33 23.07 4.33 24.08 42.79 48.71 14.84 36.94 15.64 6.30 0.00 16.89 22.99 0.00 8.98 81.79 42.17 50.94 25.08 33.92 24.58 48 ER7b ExonRegion 0 5.28 17.92 23.51 23.21 11.09 17.37 27.10 37.82 30.65 53.40 33.52 9.42 19.33 14.19 19.07 1.67 2.72 82.40 51.95 65.28 34.15 26.24 32.21 49 E7b_E8a KnownJunction 0 3.78 23.55 16.06 21.11 15.28 34.01 29.81 42.55 22.22 35.11 29.64 18.01 34.25 14.72 13.35 0.00 4.02 58.24 45.37 31.89 37.13 38.88 21.51 50 E8_Aa NovelBoundary 0 3.78 16.77 7.30 4.40 3.90 0.00 4.15 2.55 0.00 1.67 4.84 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 5.88 0.00 0.00 4.35 51 ER8a ExonRegion 0 1.35 9.82 24.53 19.18 8.24 16.65 25.98 32.70 21.95 35.77 26.29 1.91 16.01 18.54 11.47 0.00 2.68 56.68 36.33 48.23 32.76 31.48 24.58 52 E8_Da NovelBoundary 0 11.19 0.00 1.33 4.13 0.00 0.00 16.78 2.46 1.33 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 4.80 2.43 0.00 2.88 4.27 53 E8a_E9a KnownJunction 0 2.82 12.37 22.12 18.68 4.33 2.84 11.13 25.01 31.80 30.30 23.95 5.70 19.80 13.71 15.20 0.00 0.00 54.30 40.38 74.40 35.34 25.35 32.69 54 ER9a ExonRegion 0 2.51 11.46 20.01 18.39 7.01 14.33 21.44 18.26 16.98 32.17 25.04 2.42 16.30 12.94 15.53 0.00 0.00 41.73 22.70 41.08 19.96 30.19 21.92 55 E9a_E10a KnownJunction 0 3.11 17.76 5.56 25.11 3.65 18.17 39.30 27.68 15.31 31.37 28.43 5.40 14.93 12.07 8.90 0.00 0.00 52.89 26.54 48.96 22.55 23.82 15.54 56 ER10a ExonRegion 0 1.93 12.28 25.27 20.06 6.96 17.39 24.05 24.94 21.86 34.03 38.81 1.72 19.49 12.00 12.99 0.00 0.00 83.94 54.06 41.31 20.39 25.71 47.61 57 E10a_E11a KnownJunction 0 3.78 3.16 30.63 15.92 4.33 35.38 32.28 37.83 25.75 34.06 28.11 6.30 20.62 33.85 14.46 0.00 0.00 99.45 50.17 56.76 21.75 21.98 62.06 58 ER11a ExonRegion 0 1.32 9.10 13.09 9.97 4.19 8.88 13.12 13.61 13.00 21.41 16.56 0.54 4.52 9.83 10.21 0.00 1.25 36.86 20.00 27.63 16.46 12.42 15.77 59 E11_Da NovelBoundary 0 3.78 9.93 7.30 18.51 0.00 0.00 6.14 8.87 10.39 10.31 6.48 0.00 0.00 2.35 0.00 0.00 0.00 11.81 9.13 9.01 3.15 7.96 4.10 60 E11a_E12a KnownJunction 0 0.00 8.55 13.51 16.12 13.84 21.52 15.02 27.85 20.92 28.61 14.32 0.00 0.00 9.83 18.17 0.00 0.00 44.98 35.58 44.10 16.12 26.45 26.04 61 I11_AR1 ActiveIntronRegion 0 3.45 11.19 6.85 8.84 6.54 6.62 9.97 12.82 6.87 7.04 3.14 0.46 1.50 1.74 1.63 0.00 0.85 15.00 5.41 7.69 5.08 2.65 5.48 62 E12_Aa NovelBoundary 0 3.41 6.31 13.57 11.05 7.81 0.00 10.55 18.28 5.99 7.39 2.11 0.00 0.00 2.47 0.00 0.00 0.00 11.40 4.24 9.08 7.85 3.12 8.54 63 ER12a ExonRegion 0 3.26 26.61 20.06 18.34 11.63 29.17 40.39 44.13 22.75 41.78 40.25 0.00 2.89 16.27 14.67 0.00 0.89 45.38 42.36 43.37 21.85 30.96 26.98 64 E12_Da KnownBoundary 0 6.89 33.81 26.94 17.71 34.30 46.28 72.25 36.27 18.06 34.01 33.38 0.00 0.00 9.54 9.52 0.00 9.44 21.85 17.60 35.41 27.31 21.55 17.84 65 ER12b ExonRegion 0 4.41 40.11 31.49 31.46 30.97 39.47 51.56 48.92 21.02 42.10 24.55 2.60 7.40 10.67 10.87 0.00 0.26 35.62 38.38 32.48 12.29 41.47 27.24 66 E12_Db KnownBoundary 0 6.89 75.38 36.25 37.42 82.17 83.02 130.85 52.00 30.90 44.32 6.95 0.00 13.31 12.66 4.45 0.00 0.00 5.22 38.31 38.80 9.08 29.51 20.06 67 ER12c ExonRegion 0 10.86 62.13 37.99 38.90 35.38 25.44 55.89 46.87 30.12 39.36 12.33 2.96 7.65 7.97 8.72 3.61 2.82 34.18 33.19 39.79 14.21 31.12 18.41