Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DUSP18 Gene 0 23.97 8.14 9.05 7.15 17.54 21.53 13.02 15.89 21.35 13.95 11.15 7.50 14.11 13.12 19.38 18.26 10.63 7.48 14.20 7.29 19.92 12.11 12.49 2 334679 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 461301 Transcript 0 0.00 0.00 2.53 0.00 0.00 0.00 0.00 2.03 3.23 1.22 0.00 0.00 3.33 1.24 0.00 4.27 4.16 2.57 1.98 0.00 4.57 0.00 1.71 4 342474 Transcript 0 7.00 0.01 0.18 0.42 9.22 2.05 0.81 1.30 3.14 3.21 13.96 0.00 3.68 2.59 4.82 2.31 0.67 0.58 0.97 2.06 21.17 2.69 6.01 5 407308 Transcript 0 8.68 2.65 2.69 2.73 7.90 5.54 1.80 5.25 6.10 5.52 3.64 1.35 7.62 2.00 6.63 3.84 1.70 5.85 4.33 3.73 9.12 1.05 5.50 6 403268 Transcript 0 32.49 13.07 12.01 10.96 25.75 25.62 22.82 20.63 26.70 17.02 19.05 10.79 16.46 13.15 17.37 23.05 13.56 12.62 16.64 11.93 23.94 15.28 18.67 7 404885 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 377087 Transcript 0 5.14 4.53 1.55 0.58 4.71 6.89 4.11 1.70 2.22 0.82 0.79 2.51 2.76 3.89 12.30 3.36 3.88 0.00 4.05 5.46 3.36 0.31 3.98 9 442752 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 430175 Transcript 0 0.00 2.53 0.00 0.00 0.00 2.78 0.00 3.82 6.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 1.88 1.44 1.27 0.00 0.00 11 412865 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Ae KnownBoundary 0 3.78 5.92 3.02 0.00 0.00 2.90 0.00 0.00 2.89 3.33 2.05 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 2.35 0.00 3.84 14 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1c ExonRegion 0 2.71 1.38 0.00 0.00 0.00 1.32 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Af KnownBoundary 0 20.37 0.00 0.00 4.49 0.00 13.29 8.83 4.35 1.56 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 0.00 3.76 0.00 2.84 0.00 4.18 17 ER1d ExonRegion 0 8.47 2.03 0.00 0.00 0.00 7.34 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER1e ExonRegion 0 14.46 2.03 0.00 0.00 0.67 11.31 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 19 ER1f ExonRegion 0 27.95 1.02 0.00 0.00 2.68 21.36 3.74 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 4.55 0.00 0.00 5.43 0.00 0.19 0.43 0.00 20 E1_Ag KnownBoundary 0 57.49 0.00 2.87 1.90 7.39 20.90 0.00 2.51 3.24 3.33 0.00 0.00 0.00 2.41 0.00 11.88 0.00 2.16 13.08 0.00 0.00 0.00 0.00 21 ER1g ExonRegion 0 7.91 1.88 5.39 2.32 5.44 17.68 4.58 10.54 12.51 12.67 11.47 0.67 9.03 14.90 21.04 21.64 10.38 6.84 14.47 4.75 27.61 9.26 6.33 22 E1_Da KnownBoundary 0 0.00 3.03 4.61 1.53 0.00 15.90 1.77 0.00 6.16 5.88 6.95 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 2.62 22.12 0.00 0.00 23 E1a_E1i KnownJunction 0 0.00 0.00 5.06 0.00 0.00 0.00 0.00 4.07 6.45 2.44 0.00 0.00 6.66 2.47 0.00 8.54 8.32 5.14 3.95 0.00 9.14 0.00 3.41 24 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 1.59 0.00 4.37 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 8.96 3.06 8.37 25 E1a_E3a KnownJunction 0 9.26 0.00 11.62 0.00 0.00 18.40 11.57 20.99 17.39 14.80 20.06 6.15 14.93 28.84 28.06 24.10 26.09 7.88 16.94 3.26 23.54 19.35 4.01 26 ER1h ExonRegion 0 8.68 2.65 2.69 2.73 7.90 5.54 1.80 5.25 6.10 5.52 3.64 1.35 7.62 2.00 6.63 3.84 1.70 5.85 4.33 3.73 9.12 1.05 5.50 27 E1_Ah KnownBoundary 0 6.74 0.00 8.43 2.00 16.72 9.88 4.11 8.63 9.17 7.76 2.21 6.00 0.00 0.00 10.63 4.27 3.65 2.49 3.86 3.26 11.31 0.00 0.00 28 ER1i ExonRegion 0 11.15 5.13 4.68 5.47 10.84 15.66 7.24 10.19 13.04 8.05 1.97 1.66 3.57 2.10 4.68 3.18 5.11 2.55 5.68 2.76 2.99 4.59 5.91 29 E1_Ai KnownBoundary 0 8.67 5.92 1.27 5.83 6.71 40.66 9.58 15.94 6.92 3.95 2.42 0.00 6.17 2.12 13.35 8.46 4.11 3.27 17.51 0.00 0.00 8.39 20.66 30 ER1j ExonRegion 0 10.71 2.58 2.84 4.12 11.93 28.16 9.69 10.89 13.53 7.22 2.02 1.45 5.37 3.71 5.51 4.92 6.88 5.71 11.62 4.52 6.96 4.74 4.37 31 E1b_E3a KnownJunction 0 3.70 5.53 1.36 1.66 11.63 18.28 1.63 11.09 7.90 4.00 0.00 0.00 0.00 0.00 0.00 3.25 4.77 6.88 0.00 3.26 0.00 2.39 0.00 32 E1b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E2_Aa NovelBoundary 0 14.15 3.35 5.97 4.00 3.23 23.96 6.05 0.00 3.27 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.38 0.00 3.26 10.81 0.00 4.35 34 ER2a ExonRegion 0 6.40 0.02 0.54 1.27 7.45 6.16 2.42 3.91 4.23 7.34 15.57 0.00 3.26 3.53 5.07 3.51 2.02 1.75 2.92 2.92 26.51 2.45 6.00 35 E2a_E3a KnownJunction 0 14.60 0.00 0.00 0.00 15.87 0.00 0.00 0.00 3.59 2.28 21.95 0.00 7.79 2.12 9.39 3.42 0.00 0.00 0.00 3.26 28.05 2.57 3.67 36 ER3a ExonRegion 0 35.27 12.98 11.63 5.66 15.30 31.91 8.91 31.68 38.40 30.08 26.08 16.06 35.05 34.99 53.73 44.18 28.96 17.39 21.95 10.83 52.39 32.22 21.36 37 E3_Da KnownBoundary 0 23.56 19.08 18.07 6.23 11.21 51.67 9.89 23.62 30.73 15.12 20.06 5.55 13.31 40.56 62.30 41.19 31.60 19.77 27.58 2.68 51.15 22.17 16.82 38 ER3b ExonRegion 0 21.79 12.85 15.52 8.56 25.72 50.36 13.54 29.99 44.91 25.35 31.29 22.96 17.87 30.34 49.69 38.84 25.46 14.21 17.64 13.10 55.64 26.85 14.13 39 E3_Db KnownBoundary 0 35.04 3.16 17.98 10.45 24.79 44.24 27.91 35.61 48.38 21.01 17.43 36.76 46.43 17.60 63.66 35.80 4.77 11.52 27.11 8.82 50.35 31.90 30.99 40 E3b_E3b KnownJunction 0 3.63 0.00 0.00 0.00 0.00 0.00 5.92 2.22 1.50 0.00 7.16 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 5.56 2.33 0.00 41 ER3c ExonRegion 0 27.57 12.33 21.23 11.93 27.14 27.28 16.45 32.62 54.87 25.75 20.51 32.84 45.84 45.75 66.81 46.78 30.93 15.41 34.15 17.37 52.13 30.80 20.77 42 E3_Ab KnownBoundary 0 37.49 23.68 10.70 6.59 14.52 7.89 7.86 32.86 45.49 30.54 20.32 18.91 12.50 43.03 52.17 39.48 25.15 6.55 10.73 14.00 82.97 23.21 15.28 43 ER3d ExonRegion 0 30.92 10.28 17.26 12.11 29.72 37.82 20.35 28.78 42.16 28.76 16.96 17.68 40.89 36.36 52.32 38.02 19.73 13.32 21.06 10.84 51.42 23.03 21.49 44 E3_Dc KnownBoundary 0 17.11 0.00 12.42 8.89 24.36 30.27 20.45 16.51 19.82 20.20 12.74 18.46 19.48 11.95 10.26 23.24 8.60 4.81 0.00 0.00 20.39 25.04 3.67 45 E3_Ac KnownBoundary 0 31.56 3.35 6.36 2.00 16.38 5.79 17.97 12.32 24.59 11.17 12.79 5.55 12.34 15.13 16.69 24.44 4.11 9.58 4.05 0.00 38.55 8.39 8.28 46 ER3e ExonRegion 0 33.16 2.71 18.38 14.08 29.43 34.64 31.63 29.58 45.42 28.55 21.69 16.84 38.56 35.73 29.66 45.24 17.60 11.09 6.37 3.78 47.75 24.31 20.23 47 ER3f ExonRegion 0 44.23 12.66 18.23 11.85 30.63 33.23 22.56 26.74 44.21 25.77 17.67 9.28 27.28 40.24 35.11 25.96 25.87 14.22 19.96 11.29 52.75 29.13 24.63 48 E3_Ad KnownBoundary 0 69.05 20.19 20.40 10.99 38.88 28.90 18.37 25.88 31.22 18.96 23.95 6.30 40.58 43.56 44.87 24.44 34.41 14.63 34.26 5.50 51.83 36.99 20.15 49 ER3g ExonRegion 0 28.87 14.89 19.49 13.17 28.27 17.09 21.26 32.09 38.41 25.45 25.42 15.36 50.62 23.75 29.89 37.96 17.56 11.92 32.15 10.20 42.20 23.86 10.42 50 E3_Dd KnownBoundary 0 17.34 9.60 17.18 15.38 12.14 8.40 31.71 24.52 39.99 24.58 27.06 12.60 18.99 16.13 23.36 30.76 4.11 8.25 41.88 5.50 35.15 26.09 3.50 51 E3d_E3e KnownJunction 0 0.00 5.06 0.00 0.00 0.00 2.90 0.00 7.64 13.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 3.76 2.88 2.53 0.00 0.00 52 E3d_E5a KnownJunction 0 3.78 0.00 0.00 3.96 8.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 9.60 0.00 6.30 3.12 3.76 53 ER3h ExonRegion 0 37.95 8.29 17.27 13.60 29.56 33.03 19.03 29.16 43.49 28.95 24.46 10.31 26.61 30.75 33.81 28.13 16.32 9.02 27.03 9.21 23.34 27.75 19.90 54 E3_Ae KnownBoundary 0 23.71 3.09 7.21 7.92 24.45 30.44 13.73 13.92 22.45 22.21 11.95 0.00 14.93 12.30 28.80 14.18 4.86 2.20 32.19 8.18 10.50 7.90 8.45 55 ER3i ExonRegion 0 25.18 2.04 5.05 4.51 11.29 17.11 14.73 12.25 18.23 9.26 4.08 3.84 10.48 8.78 8.59 9.72 5.01 5.28 13.08 3.06 4.14 9.57 5.78 56 E3_De KnownBoundary 0 22.08 5.72 1.74 0.00 7.30 13.63 4.42 0.00 1.62 0.00 2.58 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 4.35 57 E3e_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E3e_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E3e_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER3j ExonRegion 0 21.09 3.79 2.38 1.28 5.89 6.75 6.02 5.09 6.44 4.13 2.15 1.78 3.30 2.13 3.70 7.70 1.49 0.83 5.62 0.58 3.00 4.69 5.78 61 E3_Df KnownBoundary 0 70.01 5.85 6.00 9.19 57.64 36.68 11.75 7.89 27.00 6.45 24.06 5.25 20.45 33.67 27.81 28.03 26.18 3.32 25.60 2.56 7.54 7.16 22.79 62 ER3k ExonRegion 0 61.36 26.15 24.02 21.92 51.49 51.23 39.73 39.04 51.90 34.04 30.94 21.59 32.91 26.31 34.74 46.11 27.11 22.76 33.28 23.86 42.31 28.24 37.34 63 Ix Intron 0 17.61 7.79 11.40 10.71 21.83 28.26 12.80 14.71 15.42 11.96 2.79 2.62 3.24 8.11 11.36 7.18 3.32 5.42 12.90 2.07 8.85 8.30 10.78 64 Ix_SR1 SilentIntronRegion 0 17.29 8.40 10.17 10.55 26.45 30.81 15.05 14.46 14.95 11.82 2.51 3.05 4.43 8.46 11.03 6.90 3.68 5.12 15.52 1.18 8.28 8.41 11.72 65 Ix_AR1 ActiveIntronRegion 0 18.30 6.52 14.01 11.05 12.22 22.98 8.10 15.27 16.45 12.29 3.38 1.73 0.75 7.38 12.07 7.80 2.57 6.06 7.43 3.93 10.05 8.10 8.84 66 E4_Aa NovelBoundary 0 25.49 0.00 6.18 5.03 0.00 29.87 4.15 11.50 7.58 6.69 0.00 6.30 0.00 12.24 37.95 0.00 4.39 4.60 8.19 0.00 8.65 6.06 0.00 67 E4_Ab NovelBoundary 1 2997.64 4237.07 5525.47 3051.09 172.92 274.44 149.67 1130.44 676.53 1431.85 922.29 67.67 15.91 72.11 562.71 624.37 748.67 1123.51 936.87 669.92 1431.44 812.32 410.00 68 ER4a ExonRegion 0 0.00 1.71 3.87 1.31 2.03 1.03 1.96 1.59 4.30 1.56 1.01 0.00 0.00 1.04 9.63 2.26 0.00 0.00 0.00 1.11 6.79 0.00 2.35 69 ER4b ExonRegion 1 17.34 10.76 12.01 7.58 20.63 24.31 9.74 14.37 14.41 6.94 3.60 5.34 8.10 8.26 28.32 7.59 7.61 3.33 12.33 8.76 12.15 4.48 9.00 70 E4_Da KnownBoundary 0 730.57 727.37 908.81 559.04 662.99 453.94 689.78 635.70 574.50 803.09 184.26 74.72 191.87 186.24 338.96 552.85 514.54 679.38 671.17 604.98 245.81 274.51 539.15 71 ER4c ExonRegion 0 15.43 11.88 0.77 0.43 12.11 19.64 10.38 3.50 2.37 0.91 1.37 7.52 8.27 10.64 27.26 7.82 11.64 0.00 12.15 15.29 3.31 0.93 9.58 72 E4_Db NovelBoundary 0 10.30 0.00 4.82 2.00 19.78 35.15 17.14 10.39 5.15 1.61 2.32 0.00 0.00 4.12 18.54 0.00 0.00 8.66 8.66 9.46 3.15 8.14 4.35 73 ER5a ExonRegion 0 4.29 2.83 4.10 6.15 6.82 1.15 5.37 3.57 4.07 3.53 1.69 0.00 1.86 0.68 2.80 1.77 1.67 3.66 7.03 2.16 3.84 2.97 5.52 74 E5_Da KnownBoundary 0 6.74 3.35 10.20 12.95 16.30 2.33 6.23 10.64 10.10 4.65 4.53 0.00 0.00 0.00 0.00 0.00 4.77 5.14 8.56 3.26 6.30 0.00 3.84 75 ER5b ExonRegion 0 1.36 1.13 2.15 5.72 2.44 0.41 4.30 1.50 2.74 1.61 3.35 0.00 0.42 0.00 2.32 0.00 0.00 1.27 5.17 0.00 2.25 0.00 0.91