Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TNFRSF13C Gene 0 41.14 8.18 37.51 25.17 45.40 10.00 16.19 51.50 26.36 26.83 88.57 23.51 134.22 273.55 321.06 347.03 271.61 68.96 20.35 15.00 1.33 1.95 5.98 2 291232 Transcript 0 25.22 3.99 22.73 14.95 34.82 7.13 12.02 32.63 15.36 19.67 57.67 12.95 88.61 178.93 209.33 198.32 178.68 44.64 12.09 10.06 0.61 1.95 2.69 3 IG29 Intergenic 0 5.35 24.24 52.77 31.05 17.67 6.00 15.71 61.03 22.25 50.00 11.01 2.96 2.61 10.01 20.25 19.85 20.64 160.52 42.89 65.30 0.97 1.77 3.06 4 IG29_SR4 SilentIntergenicRegion 0 1.93 7.37 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 1.76 3.94 3.52 6.09 22.17 0.00 0.00 0.00 5.75 7.67 1.97 0.00 0.00 5 IG29_SR3 SilentIntergenicRegion 0 1.81 21.79 28.17 26.11 17.20 3.93 10.21 35.31 11.04 24.17 5.80 1.53 0.00 8.56 28.23 15.29 16.98 94.48 36.86 64.74 0.00 0.89 5.03 6 IG29_AR2 ActiveIntergenicRegion 0 9.84 70.03 79.07 68.17 42.38 8.79 25.20 84.96 30.48 61.34 12.36 7.59 9.78 15.71 31.59 63.48 21.10 190.47 92.10 61.84 0.00 3.03 6.40 7 IG29_SR2 SilentIntergenicRegion 0 4.79 20.56 51.45 25.51 15.09 5.21 14.88 60.47 22.31 51.83 10.79 2.15 2.13 11.30 23.61 20.98 26.84 172.40 43.13 81.70 1.14 1.92 2.76 8 IG29_AR1 ActiveIntergenicRegion 0 9.21 39.99 73.84 45.61 25.65 9.93 26.45 78.43 30.07 65.32 17.24 3.90 3.07 14.82 27.72 28.63 27.69 213.68 49.35 83.11 1.57 2.77 3.39 9 IG29_SR1 SilentIntergenicRegion 0 3.76 14.88 43.03 25.91 13.66 4.85 10.78 52.77 18.42 41.69 8.63 2.79 2.01 5.73 11.10 9.03 11.26 125.58 33.78 41.17 0.68 1.03 2.73 10 ER1a ExonRegion 0 0.65 2.29 10.80 4.58 1.48 0.52 2.24 11.77 3.63 16.80 17.33 1.00 7.59 35.98 55.19 63.10 57.54 26.13 13.50 4.20 0.62 0.00 2.48 11 E1_Da NovelBoundary 0 0.00 0.00 24.33 8.49 0.00 0.00 0.00 37.75 6.80 25.79 26.27 0.00 13.64 53.15 69.47 17.94 69.38 57.12 23.62 14.45 3.15 0.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 18.58 0.00 0.00 4.89 13.35 7.95 44.41 0.00 0.00 0.00 0.00 0.00 0.00 13 E2_Aa NovelBoundary 0 13.41 5.66 5.50 0.00 0.00 5.45 4.33 10.35 3.04 6.69 19.00 12.45 6.82 117.25 65.89 56.82 69.10 29.31 8.38 4.86 0.00 0.00 0.00 14 ER2a ExonRegion 0 17.45 1.21 12.46 6.47 8.94 3.79 6.33 21.27 12.77 15.39 53.75 7.31 42.62 138.09 187.12 151.37 134.52 25.62 4.73 6.01 0.48 0.76 1.95 15 E2_Da NovelBoundary 0 3.78 6.05 7.21 3.50 4.33 0.00 0.00 19.59 2.89 13.16 0.00 0.00 0.00 5.24 31.89 12.30 9.54 19.48 0.00 2.94 0.00 0.00 0.00 16 E2a_E3a KnownJunction 0 41.93 3.09 32.23 22.87 86.42 15.22 26.01 47.15 19.94 30.68 69.39 17.71 172.88 297.61 316.09 234.21 248.34 67.94 12.42 17.26 0.00 5.82 0.00 17 I2 Intron 0 8.70 3.99 12.28 5.31 5.00 1.54 3.83 13.23 6.70 10.70 6.32 0.69 4.92 15.62 30.69 35.26 30.83 26.42 8.33 8.55 0.00 0.97 1.92 18 I2_SR1 SilentIntronRegion 0 8.73 4.00 12.33 5.33 5.02 1.55 3.85 13.28 6.73 10.73 6.34 0.69 4.94 15.67 30.79 35.39 30.94 26.51 8.36 8.58 0.00 0.98 1.93 19 E3_Aa NovelBoundary 0 23.56 8.49 9.08 4.96 10.95 2.90 8.21 12.61 5.30 16.31 4.26 6.30 6.82 12.48 9.64 11.71 11.78 27.07 9.51 14.19 0.00 0.00 3.76 20 ER3a ExonRegion 0 66.05 13.38 58.17 40.82 77.24 16.13 25.53 79.07 40.47 35.50 129.30 38.71 219.98 418.08 474.88 534.94 408.60 103.52 29.79 22.84 1.97 3.17 9.03 21 IG28 Intergenic 0 55.02 6.66 19.29 16.54 28.38 4.54 10.34 26.59 10.88 14.93 32.35 11.71 46.03 74.29 141.87 100.33 79.83 25.61 6.21 8.67 0.73 0.78 2.23 22 IG28_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.83 55.02 51.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 IG28_SR2 SilentIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.89 64.41 66.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 IG28_AR1 ActiveIntergenicRegion 0 217.33 24.24 64.59 58.69 102.50 14.24 35.91 95.45 36.40 45.06 112.64 45.54 181.58 280.08 526.76 393.22 284.93 86.82 22.21 31.95 2.21 2.82 7.76 25 IG28_SR1 SilentIntergenicRegion 0 4.34 1.18 5.18 3.40 5.27 1.53 2.37 5.12 2.94 5.57 7.33 1.15 3.55 9.54 21.24 8.89 15.88 6.54 1.22 1.40 0.26 0.15 0.51