Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	APOBEC3F	Gene	0	54.02	0.88	14.91	14.02	25.51	16.89	15.64	12.58	14.23	9.37	62.92	68.98	109.23	124.12	155.97	123.11	80.39	3.86	12.41	9.37	43.34	18.81	29.63
2	491387	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	308521	Transcript	0	82.03	1.15	11.66	13.41	22.27	17.50	21.96	13.60	13.43	9.69	69.06	68.14	137.41	118.34	140.00	156.12	89.09	3.74	15.99	8.31	39.11	20.60	23.45
4	381565	Transcript	0	10.05	0.00	4.92	2.58	9.87	4.25	4.55	1.73	3.90	5.00	13.47	15.94	13.44	32.70	55.10	14.37	15.93	0.41	3.79	1.59	10.76	6.28	4.72
5	452957	Transcript	0	1.29	0.32	5.19	4.50	21.60	31.89	9.86	1.45	3.11	0.53	2.49	1.51	1.97	5.06	4.88	20.55	4.78	1.98	10.25	0.00	2.78	4.29	5.70
6	476513	Transcript	0	14.67	0.00	7.92	8.33	5.15	7.44	6.05	3.10	5.26	3.89	7.80	9.78	7.58	19.99	35.43	18.25	19.42	2.50	10.23	2.18	11.54	5.90	6.59
7	IG35_SR1	SilentIntergenicRegion	0	4.82	0.00	0.83	0.00	3.66	0.00	0.00	0.00	0.00	0.00	0.88	31.54	51.00	43.49	14.89	1.35	0.00	0.00	0.00	0.00	2.01	0.00	0.00
8	ER1a	ExonRegion	0	11.27	0.63	4.28	2.32	2.50	21.46	5.89	1.60	0.96	0.83	9.66	0.03	0.00	11.72	10.83	12.02	17.15	1.71	0.99	1.98	9.78	0.65	4.57
9	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1b	ExonRegion	0	26.24	0.00	11.36	6.66	4.55	2.47	4.27	0.40	4.73	5.59	14.54	4.86	9.80	22.95	28.46	49.01	39.21	1.62	11.96	6.24	13.49	5.74	5.25
12	E1_Ab	KnownBoundary	1	69.94	0.00	37.58	28.77	0.00	10.11	2.16	14.21	14.38	8.92	303.71	28.06	35.55	154.10	175.54	262.07	415.15	10.32	23.62	23.52	56.34	12.61	25.69
13	ER1c	ExonRegion	1	81.37	0.00	22.14	14.54	33.95	34.64	16.39	3.73	3.07	5.22	42.22	2.31	17.20	76.59	85.62	103.56	108.78	4.60	6.72	13.00	46.96	16.34	34.46
14	E1_Ac	KnownBoundary	1	237.00	0.00	21.44	21.91	115.53	111.58	60.15	13.35	15.39	7.79	167.88	10.80	19.48	153.98	186.04	283.17	238.80	6.26	31.44	25.31	75.92	30.68	78.62
15	ER1d	ExonRegion	0	81.10	0.00	18.66	19.97	39.42	54.35	34.14	11.41	8.33	11.42	31.06	31.86	26.39	74.47	102.47	114.37	55.90	6.85	20.26	7.74	36.73	25.95	55.60
16	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER2a	ExonRegion	0	26.40	0.53	23.74	23.92	12.11	21.82	12.43	19.37	14.99	14.35	59.52	85.72	75.95	118.48	160.15	172.13	113.37	9.09	18.53	14.56	48.30	27.41	50.17
18	E2_Da	KnownBoundary	0	6.45	2.76	16.56	14.18	28.86	26.23	13.60	3.82	8.68	1.53	5.16	19.21	6.82	12.71	19.66	19.57	12.72	4.89	25.69	0.00	9.08	5.94	19.80
19	E2a_E3a	KnownJunction	0	3.78	0.00	1.57	0.00	7.98	0.00	2.25	0.00	2.98	6.58	12.00	18.91	8.28	18.07	48.58	3.50	8.51	0.00	4.24	0.00	8.59	8.45	4.35
20	E2a_E4a	KnownJunction	0	34.45	0.00	11.68	20.74	21.14	8.01	3.53	31.71	22.25	14.99	73.81	104.13	120.12	138.80	212.50	160.13	91.91	9.45	9.22	23.97	34.72	16.04	76.40
21	ER2b	ExonRegion	0	1.29	0.32	5.19	4.50	21.60	31.89	9.86	1.45	3.11	0.53	2.49	1.51	1.97	5.06	4.88	20.55	4.78	1.98	10.25	0.00	2.78	4.29	5.70
22	E2_Db	NovelBoundary	0	20.30	0.00	11.38	15.82	16.47	19.76	1.90	4.44	9.46	6.29	39.06	24.46	19.48	68.57	48.46	46.14	74.71	0.00	0.00	0.00	14.52	13.72	24.67
23	E3_Aa	NovelBoundary	0	36.01	0.00	7.54	6.73	7.64	19.76	20.98	6.82	10.94	5.51	13.90	6.75	7.30	13.01	34.61	45.89	37.12	0.00	0.00	3.26	9.45	5.76	19.46
24	ER3a	ExonRegion	0	16.32	0.00	8.28	5.16	11.75	8.50	6.84	3.47	4.81	3.42	14.93	12.98	18.60	47.33	61.62	25.23	23.36	0.82	3.33	3.18	12.93	4.11	5.08
25	E3_Da	NovelBoundary	0	55.94	0.00	8.25	7.66	11.80	21.18	4.24	11.13	12.50	8.00	40.12	12.30	35.22	49.21	22.50	47.25	59.93	4.56	9.32	6.52	11.80	3.12	19.97
26	ER4a	ExonRegion	0	54.37	0.85	11.55	9.07	16.65	15.62	18.53	16.75	18.45	8.46	55.26	87.28	107.62	111.80	132.70	124.90	84.58	5.53	10.73	11.69	38.12	14.50	26.29
27	E4_Ab	KnownBoundary	0	103.57	0.00	15.58	9.39	30.31	13.57	40.06	15.24	19.30	8.22	68.96	90.93	106.32	116.55	106.56	144.15	124.26	4.56	4.24	8.63	26.19	39.31	11.52
28	E4_Da	NovelBoundary	0	24.60	0.00	8.07	4.99	0.00	5.68	8.97	2.55	5.15	9.16	49.22	26.86	38.96	50.21	47.35	68.02	58.34	2.24	4.80	9.08	15.44	8.88	15.62
29	ER4b	ExonRegion	0	53.97	0.00	11.03	8.86	14.05	9.17	28.96	9.51	10.65	7.45	48.56	47.62	87.94	120.59	140.35	95.85	75.92	1.85	7.57	14.89	21.76	17.19	22.39
30	E4_Db	KnownBoundary	0	14.52	0.00	1.57	6.49	0.00	2.90	2.21	0.00	3.21	1.67	2.58	6.30	13.31	16.72	14.22	0.00	4.58	0.00	0.00	0.00	10.93	2.88	0.00
31	E4b_E4c	KnownJunction	0	32.82	0.00	4.49	10.42	16.21	13.29	10.02	6.90	6.02	10.83	89.13	105.78	159.57	161.81	155.02	215.84	99.58	1.99	13.27	5.82	42.32	17.08	24.93
32	ER4c	ExonRegion	0	50.87	0.00	9.63	12.22	12.90	12.31	16.45	8.89	10.85	7.05	67.44	82.72	123.62	157.31	162.47	145.63	92.90	0.92	12.63	12.54	32.19	15.85	27.06
33	ER4d	ExonRegion	0	14.67	0.00	7.92	8.33	5.15	7.44	6.05	3.10	5.26	3.89	7.80	9.78	7.58	19.99	35.43	18.25	19.42	2.50	10.23	2.18	11.54	5.90	6.59
34	E4_Ac	KnownBoundary	0	13.34	0.00	24.33	18.71	8.15	10.90	8.74	1.93	2.46	7.98	14.90	0.00	6.33	11.54	33.75	22.22	32.07	2.28	3.76	0.00	16.25	5.02	11.69
35	ER4e	ExonRegion	0	44.56	0.30	21.76	19.36	21.85	18.14	14.85	21.80	20.91	19.50	99.53	66.20	133.13	157.47	185.53	207.19	139.07	2.43	21.04	13.77	45.56	26.35	40.42
36	E4_Dc	NovelBoundary	0	3.11	0.00	11.65	12.62	4.33	0.00	5.43	10.10	2.95	4.38	4.37	6.45	0.00	8.01	23.73	21.11	16.08	0.00	13.37	0.00	6.18	0.00	7.43
37	E4c_E5a	KnownJunction	1	34.90	3.16	11.09	10.65	11.38	17.66	14.26	22.22	25.38	8.43	67.96	11.55	109.57	92.18	91.23	133.90	85.37	0.00	9.60	12.02	23.23	23.02	8.19
38	Ix	Intron	0	14.10	0.13	11.83	9.41	9.80	6.49	5.40	6.18	5.64	3.96	8.52	15.93	13.10	22.26	37.64	25.33	19.19	1.58	4.55	2.82	8.57	4.87	7.90
39	Ix_AR1	ActiveIntronRegion	0	16.59	0.49	9.59	5.58	8.22	5.19	5.35	5.21	5.65	3.32	9.06	17.70	21.23	26.60	31.79	27.14	17.61	1.34	4.12	2.92	10.32	4.38	6.65
40	Ix_SR1	SilentIntronRegion	0	13.17	0.00	13.37	11.26	10.40	7.05	5.32	6.81	5.39	4.30	9.15	15.21	10.44	22.60	42.84	26.47	21.48	1.84	4.90	2.99	8.82	5.33	7.63
41	Ix_AR2	ActiveIntronRegion	0	13.80	0.00	7.76	7.45	10.09	6.25	6.03	4.71	7.22	3.50	3.21	16.19	9.46	9.25	19.67	13.76	8.80	0.56	3.45	1.45	2.58	3.25	12.87
42	E5_Aa	NovelBoundary	0	109.35	0.00	6.27	10.85	24.36	10.85	14.18	0.00	4.28	4.22	2.68	18.91	6.82	7.30	17.06	34.52	14.31	0.00	8.85	0.00	11.49	8.70	10.76
43	ER5a	ExonRegion	0	48.40	0.44	15.36	15.90	17.25	11.98	18.77	17.23	25.69	10.75	81.77	70.15	90.93	119.84	145.27	137.80	75.61	3.87	18.81	14.50	47.77	13.58	32.90
44	E5_Da	NovelBoundary	0	3.33	0.00	3.40	9.89	12.99	0.00	3.84	4.15	6.45	3.09	0.00	6.00	0.00	2.47	0.00	23.58	34.22	0.00	0.00	0.00	3.15	2.57	0.00
45	E5a_E6a	KnownJunction	1	17.63	0.00	9.58	8.26	0.00	2.90	7.24	10.06	12.36	8.03	36.01	17.71	12.50	31.61	26.45	69.04	13.09	2.36	11.95	3.26	34.60	4.65	20.49
46	ER6a	ExonRegion	0	52.80	0.00	9.04	9.21	8.14	7.94	10.88	9.67	13.90	8.19	42.25	43.34	75.19	88.15	112.63	113.26	48.65	2.39	8.56	6.76	29.09	11.33	16.77
47	E6_Da	KnownBoundary	0	293.53	0.00	46.83	33.36	43.46	28.96	25.92	43.54	44.99	23.07	138.72	89.58	175.80	192.18	214.85	269.25	207.48	4.48	9.04	9.14	59.18	5.27	21.34
48	ER6b	ExonRegion	1	116.47	0.65	11.36	10.37	17.07	20.92	22.73	17.10	14.39	8.72	56.26	40.80	140.84	102.12	123.70	149.37	72.92	6.10	17.23	12.06	43.84	16.57	21.00
49	E6b_E7a	KnownJunction	0	155.66	3.35	11.59	20.28	29.97	31.86	52.33	26.66	23.03	10.91	86.07	75.92	187.16	106.89	143.27	191.74	118.19	4.39	22.59	5.62	29.04	34.35	22.71
50	ER7a	ExonRegion	0	78.98	1.76	19.49	19.34	43.58	18.96	20.44	16.95	18.96	12.38	99.28	113.32	189.68	197.93	249.54	174.66	115.56	4.58	14.89	11.83	66.85	29.27	43.35