Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	APOL2	Gene	0	89.75	3.25	29.27	25.34	41.64	77.18	19.41	55.67	90.90	24.34	61.73	69.97	64.16	153.13	215.12	155.54	83.98	11.46	11.16	9.33	63.62	36.08	42.29
2	249066	Transcript	0	0.00	0.00	0.00	0.00	0.90	0.00	0.01	1.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	473549	Transcript	0	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	1.06	0.00	0.00	0.35	0.18	2.90	0.11	0.00	0.00	0.00	1.10	0.00	0.08	0.00
4	358502	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	451256	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.41	0.00	0.00	0.00	0.00	0.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	489186	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	484830	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	454728	Transcript	0	19.92	0.35	0.00	2.60	10.42	10.38	1.80	7.07	7.10	1.43	8.56	16.52	13.46	17.05	23.63	13.56	4.28	0.00	1.08	0.00	4.48	4.16	0.50
9	476579	Transcript	0	12.82	0.00	0.30	1.15	3.47	18.28	5.16	3.22	8.32	1.81	4.90	8.83	4.72	18.52	22.06	8.80	5.95	0.67	1.91	0.92	8.21	5.76	2.78
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	1.80	0.00	0.02	0.13	0.00	0.00	0.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.00	0.00
11	E1a_E3d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	1.06	0.00	0.00	0.35	0.18	2.90	0.11	0.00	0.00	0.00	1.10	0.00	0.08	0.00
13	ER3a	ExonRegion	0	0.82	0.00	3.36	0.00	6.13	34.87	7.11	2.12	5.18	3.79	3.68	0.00	0.00	7.20	4.21	18.02	19.43	0.30	2.62	0.00	0.82	2.92	2.42
14	E3_Ab	KnownBoundary	0	3.78	0.00	0.00	0.00	17.23	48.95	13.51	2.38	8.71	1.67	5.16	0.00	0.00	0.00	0.00	4.36	19.07	0.00	0.00	0.00	3.15	6.06	0.00
15	E3_Ac	KnownBoundary	0	0.00	0.00	1.83	0.00	0.00	20.27	2.25	2.55	0.00	5.00	0.00	0.00	0.00	0.00	0.00	0.00	4.77	0.00	0.00	0.00	0.00	6.25	0.00
16	E3_Ad	KnownBoundary	0	20.15	0.00	3.37	3.93	12.99	35.83	9.54	6.33	7.99	3.06	16.06	0.00	0.00	24.96	22.87	45.80	24.87	4.10	7.15	7.29	9.45	0.00	6.57
17	ER3b	ExonRegion	0	3.00	0.00	4.90	0.34	12.04	68.77	14.56	3.46	8.65	6.88	3.87	0.00	0.00	10.29	5.32	10.90	23.66	1.85	0.00	0.00	2.20	8.33	0.00
18	ER3c	ExonRegion	0	19.05	0.00	7.35	4.54	29.43	84.15	20.01	9.03	14.27	10.07	27.06	0.00	0.52	34.47	20.63	60.10	48.05	3.70	6.37	6.15	11.26	9.03	8.48
19	ER3d	ExonRegion	1	143.82	0.75	14.97	13.66	78.15	107.05	37.32	44.82	88.24	18.13	133.06	17.93	18.84	207.39	250.47	414.29	160.56	24.87	22.24	15.89	111.89	45.07	119.91
20	E3a_E5a	KnownJunction	0	3.11	0.00	0.00	2.06	0.00	4.60	0.00	2.46	6.83	2.74	2.68	0.00	0.00	0.00	0.00	0.00	3.46	3.32	0.00	0.00	2.47	0.00	3.16
21	E3a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E3a_E5c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E3a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.11	6.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.59	0.00	0.00
24	E3a_E7a	KnownJunction	0	28.15	0.00	9.52	5.16	15.45	22.15	16.56	44.61	77.57	15.10	34.90	80.13	28.41	24.19	45.37	51.44	52.83	3.52	3.95	5.94	34.90	2.45	18.35
25	E4_Aa	NovelBoundary	0	0.00	0.00	7.01	6.93	31.49	35.66	10.25	6.82	18.43	5.05	4.58	11.85	6.82	22.54	14.09	7.95	25.81	0.00	0.00	0.00	8.15	2.39	3.76
26	ER4a	ExonRegion	0	8.36	0.00	0.90	0.00	5.25	28.86	12.96	4.94	11.70	1.68	9.50	8.87	5.68	25.72	23.21	11.69	11.33	1.35	1.56	1.04	17.29	11.24	5.76
27	E4_Da	NovelBoundary	1	10.00	0.00	3.16	0.00	0.00	7.44	4.15	3.20	6.74	2.98	4.90	11.70	35.06	43.73	46.36	25.12	16.27	8.87	9.13	0.00	18.72	0.00	3.84
28	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	7.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER5a	ExonRegion	0	4.23	0.00	0.00	1.36	0.00	11.46	0.66	3.46	9.57	2.29	7.25	0.00	0.00	6.50	10.88	4.46	4.13	5.08	0.00	0.00	2.20	2.08	2.94
30	ER5b	ExonRegion	0	10.39	0.59	1.53	1.47	5.02	10.78	5.67	7.28	19.57	7.20	13.42	16.13	7.91	49.34	52.60	26.44	13.15	4.94	5.66	3.45	12.64	14.28	10.62
31	E5_Ac	KnownBoundary	0	3.48	0.00	1.24	0.00	8.32	10.45	12.23	3.86	27.95	10.21	18.95	12.45	6.82	67.69	88.14	61.61	14.12	10.69	9.51	3.26	18.78	11.51	7.94
32	ER5c	ExonRegion	0	20.89	0.00	2.22	7.45	2.89	34.68	11.25	14.44	28.10	8.65	18.00	25.00	14.98	58.30	66.33	31.71	20.98	7.75	8.89	7.22	22.09	10.89	10.92
33	E5_Da	KnownBoundary	0	47.64	0.00	9.05	8.62	8.66	40.60	12.45	24.32	43.03	11.28	19.95	31.51	13.47	45.62	92.59	44.95	22.72	8.58	19.20	6.52	14.09	12.43	11.18
34	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER5d	ExonRegion	1	26.90	0.99	2.08	4.48	10.07	34.88	4.65	13.03	31.73	7.38	14.51	33.61	6.48	58.20	61.11	28.74	21.00	7.91	5.06	4.65	18.86	5.11	6.57
36	E5_Db	KnownBoundary	0	40.60	6.45	0.00	5.93	0.00	21.64	1.63	11.21	17.53	8.25	24.43	33.61	6.82	69.63	52.54	14.44	13.56	2.28	3.67	2.75	9.08	2.27	8.28
37	E5_Dc	KnownBoundary	0	14.82	0.00	0.00	3.80	7.98	27.82	4.15	7.48	13.69	4.65	4.69	12.60	0.00	18.66	33.01	16.75	8.70	0.00	4.52	6.46	11.80	0.00	0.00
38	ER5e	ExonRegion	1	40.42	3.35	0.00	6.99	7.85	33.30	4.19	11.21	27.89	11.43	20.45	29.75	2.12	71.04	63.27	20.04	19.49	1.85	8.73	7.00	16.07	4.30	6.82
39	E5_Dd	KnownBoundary	0	48.82	0.00	0.00	4.00	4.16	21.29	2.08	5.83	16.72	0.00	5.11	11.10	6.17	14.60	40.42	11.28	4.11	0.00	0.00	0.00	11.61	8.94	3.84
40	ER5f	ExonRegion	1	50.80	1.36	0.00	6.81	10.70	36.37	5.30	8.64	22.44	9.37	15.46	34.64	5.47	66.32	74.95	23.78	17.60	1.85	9.56	6.38	15.43	8.33	4.89
41	ER5g	ExonRegion	0	30.08	0.00	0.00	3.44	5.16	18.47	2.52	4.73	13.26	3.77	5.20	17.63	8.49	29.85	42.97	14.72	6.52	0.66	4.17	1.72	7.35	6.05	2.59
42	E5_De	NovelBoundary	0	32.01	0.00	0.00	0.00	16.55	12.61	15.02	18.44	31.08	4.27	9.32	6.15	26.46	72.28	84.06	27.69	16.08	13.35	19.86	5.31	11.49	14.14	16.39
43	I5	Intron	0	27.54	1.10	1.67	5.32	16.46	22.95	9.63	12.42	28.40	7.60	15.59	42.57	38.64	51.81	46.12	25.45	14.68	1.56	3.18	2.83	17.49	12.04	9.40
44	I5_AR1	ActiveIntronRegion	0	22.44	1.45	3.79	2.76	9.24	27.23	7.46	17.13	35.10	6.95	18.59	24.13	13.17	56.20	50.44	25.46	13.22	2.71	3.38	2.26	21.15	10.03	11.31
45	I5_SR1	SilentIntronRegion	0	24.05	0.90	1.36	8.43	23.96	16.71	10.26	10.76	33.17	11.64	14.76	65.44	80.69	52.27	62.13	28.70	15.24	3.19	1.44	4.82	16.34	19.28	13.48
46	I5_SR2	SilentIntronRegion	0	29.33	0.90	0.20	3.38	16.32	20.13	8.95	10.57	23.06	6.82	16.50	42.48	38.60	52.11	38.98	25.37	18.30	0.61	4.24	2.12	18.81	8.55	7.81
47	I5_SR3	SilentIntronRegion	0	33.42	1.23	2.22	9.04	18.41	28.95	12.86	11.99	26.45	6.23	11.34	43.71	30.60	46.24	40.27	22.86	9.35	0.56	2.58	3.01	12.04	14.34	6.54
48	E6_Aa	NovelBoundary	0	38.23	0.00	1.74	10.99	47.37	42.87	16.30	30.23	35.21	15.50	15.37	45.16	27.60	95.53	44.87	24.78	8.51	2.16	4.80	9.14	7.78	9.12	12.12
49	ER6a	ExonRegion	1	23.54	1.04	0.00	4.80	19.64	28.75	5.40	14.16	15.24	4.29	16.29	35.89	40.38	39.25	37.25	29.31	8.15	0.00	3.25	0.00	7.82	9.92	1.50
50	E6_Da	NovelBoundary	1	35.41	0.00	1.60	18.71	11.63	60.87	7.77	33.31	27.60	16.87	6.74	99.03	80.35	21.25	41.54	34.52	0.00	2.11	0.00	0.00	0.00	16.35	4.27
51	E6a_E7a	KnownJunction	0	36.23	0.00	0.00	3.00	11.63	2.38	0.00	7.06	6.05	0.00	7.26	7.35	0.00	11.89	33.62	11.36	4.68	0.00	0.00	0.00	3.03	2.57	0.00
52	I6	Intron	0	31.65	0.52	0.93	6.49	17.44	29.07	6.60	17.12	22.11	5.46	12.11	47.04	27.54	43.39	29.91	24.69	12.24	1.41	2.85	5.17	9.57	9.59	4.13
53	I6_SR1	SilentIntronRegion	1	29.44	0.41	1.47	6.14	15.10	32.53	6.67	18.17	21.89	5.51	6.62	49.90	14.52	35.30	27.45	20.97	11.98	0.93	1.28	4.29	9.32	6.72	1.18
54	I6_AR1	ActiveIntronRegion	0	35.73	0.72	0.00	7.14	21.65	23.22	6.52	15.39	22.66	5.41	21.76	42.37	50.43	57.80	34.39	31.36	12.77	2.27	5.60	6.74	10.08	14.66	9.30
55	E7_Aa	NovelBoundary	1	49.71	0.00	0.00	5.23	25.64	28.79	4.15	35.73	41.78	14.37	6.58	66.32	78.89	84.11	67.50	55.46	21.79	4.68	0.00	11.76	40.59	15.37	16.05
56	ER7a	ExonRegion	0	51.70	0.26	13.84	9.99	51.24	67.14	14.54	56.21	100.78	18.35	135.59	142.79	83.73	113.78	127.82	102.48	140.41	1.27	8.02	6.15	82.72	25.66	17.73
57	E7a_E8a	KnownJunction	0	55.19	0.00	20.14	18.41	57.39	78.82	18.28	65.88	126.94	29.47	173.36	163.25	118.82	189.24	141.79	115.01	205.42	2.53	25.79	11.89	122.20	29.64	16.22
58	ER8a	ExonRegion	0	51.80	0.53	33.43	32.07	43.77	70.43	17.21	72.26	146.56	31.22	124.40	100.40	135.85	310.70	337.39	367.88	173.06	21.94	24.84	17.07	134.23	75.12	71.47
59	E8_Da	NovelBoundary	0	6.96	0.00	0.00	1.60	0.00	8.63	0.00	2.38	4.95	1.07	0.00	11.85	12.50	32.96	24.72	29.14	8.79	3.44	0.00	0.00	2.53	0.00	22.79
60	E8a_E9a	KnownJunction	1	79.20	5.85	42.72	46.35	84.13	73.48	26.41	116.28	198.67	45.93	80.76	57.92	147.72	502.86	692.38	641.71	109.77	34.20	28.14	17.90	83.21	191.60	159.63
61	ER9a	ExonRegion	0	93.41	5.38	39.62	38.07	90.47	135.61	37.75	93.01	171.13	38.32	125.79	117.10	118.14	299.38	327.11	334.21	135.00	17.72	20.74	11.74	111.50	73.56	85.60
62	E9a_E10a	KnownJunction	0	108.17	0.00	35.42	35.26	83.19	115.22	27.51	76.64	144.73	25.65	59.91	132.94	76.78	170.99	248.22	192.77	128.38	19.23	8.38	8.12	70.30	53.33	19.29
63	I9	Intron	0	15.76	0.51	3.67	5.21	9.77	10.23	5.06	12.35	13.50	3.91	12.34	14.85	10.40	28.15	16.52	23.79	15.92	1.51	1.06	1.36	10.57	3.37	4.01
64	I9_AR1	ActiveIntronRegion	0	12.69	0.40	3.64	4.51	7.50	7.32	4.31	9.06	14.49	3.09	14.37	14.70	6.24	30.65	16.00	20.86	16.18	2.79	0.52	0.99	13.52	3.05	3.03
65	I9_SR2	SilentIntronRegion	1	8.85	4.07	5.57	8.05	18.73	6.67	1.81	16.18	17.18	5.11	20.38	10.23	2.13	37.95	20.05	50.80	23.41	0.00	0.00	0.00	23.64	0.00	2.94
66	I9_AR2	ActiveIntronRegion	0	15.38	0.75	2.95	4.47	9.41	9.88	3.60	12.17	12.17	2.81	11.58	6.41	4.11	25.96	18.80	24.13	19.89	0.86	0.81	1.81	9.81	3.72	3.01
67	I9_SR3	SilentIntronRegion	0	27.31	0.50	6.51	9.73	16.77	16.22	8.62	20.57	18.55	5.46	14.72	31.52	30.51	29.16	21.03	28.49	14.19	1.24	1.57	1.05	7.31	3.84	5.04
68	E10_Aa	NovelBoundary	1	66.01	3.22	8.84	15.78	14.94	24.13	10.55	37.66	19.07	3.89	13.32	81.63	34.41	47.91	18.17	43.24	29.92	1.62	3.95	0.00	12.23	3.00	4.35
69	ER10a	ExonRegion	0	121.06	1.16	47.39	45.67	43.09	119.84	27.91	87.03	161.93	38.22	91.21	168.50	125.59	244.11	343.90	259.27	133.49	17.66	5.33	14.79	87.79	70.23	44.73
70	E10_Da	KnownBoundary	0	258.93	0.00	68.57	61.20	30.31	102.21	33.43	102.85	221.41	45.15	105.92	203.62	91.71	320.68	401.88	278.05	190.74	18.86	19.01	19.56	85.93	92.46	60.01
71	ER10b	ExonRegion	0	126.89	5.02	43.32	36.17	53.97	99.16	24.05	76.74	119.16	33.19	73.77	90.49	85.40	192.44	290.05	186.17	105.46	14.19	13.41	11.82	80.24	45.00	53.13
72	ER10c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00