Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TPST2 Gene 0 65.62 8.21 39.08 23.22 25.49 18.06 17.80 24.31 25.89 19.01 46.72 19.19 29.68 47.51 39.49 55.08 27.29 12.16 11.64 5.19 64.78 72.85 63.99 2 403880 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 338754 Transcript 0 17.08 1.03 4.48 7.03 6.98 8.72 8.03 4.49 1.86 3.08 1.28 3.89 0.94 5.86 5.16 2.83 1.33 0.55 2.06 0.82 9.75 9.54 10.04 4 450022 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 440953 Transcript 0 0.32 0.00 0.26 0.29 0.76 0.00 0.76 0.00 0.26 0.49 0.00 0.00 0.00 0.46 0.29 0.42 0.47 1.02 0.00 0.61 0.97 1.48 0.00 6 442495 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 3.86 0.00 0.00 0.00 11.61 7 422943 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 453117 Transcript 0 3.69 0.37 0.50 0.92 2.44 1.00 0.84 0.70 0.67 1.09 0.00 0.00 4.32 0.45 1.41 2.44 3.39 0.00 0.91 0.78 0.40 0.19 1.34 9 398110 Transcript 0 1.49 0.00 0.32 0.00 0.47 0.97 0.70 0.91 0.97 1.20 0.00 0.00 0.00 0.24 1.23 0.52 0.00 0.00 0.56 1.50 0.00 0.37 1.03 10 454778 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 1.31 0.00 0.00 0.00 0.00 11 455980 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 446035 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 445720 Transcript 0 8.83 2.38 4.64 3.95 3.47 0.71 6.39 1.07 3.15 1.43 4.28 5.82 10.39 4.09 2.19 8.17 3.71 2.25 2.63 1.38 6.69 7.85 9.53 14 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.21 0.25 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.40 0.00 1.58 17 E2_Ab KnownBoundary 0 0.00 0.00 2.48 0.00 0.00 2.90 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 4.01 18 ER2b ExonRegion 1 36.13 5.08 13.63 2.97 6.58 12.30 17.43 5.33 8.11 6.01 34.50 0.00 2.48 24.32 35.38 36.95 23.11 13.58 6.19 3.01 36.06 42.02 50.13 19 E2a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 3.12 0.00 20 E2a_E7a KnownJunction 0 51.71 3.22 32.23 7.06 7.05 9.77 20.31 16.96 22.16 12.01 49.54 0.00 0.00 23.66 48.83 68.70 19.82 21.76 0.00 0.00 60.36 69.74 74.27 21 E2a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 3.86 0.00 0.00 0.00 11.61 22 ER3a ExonRegion 0 3.97 0.74 1.00 1.85 4.87 2.00 1.69 1.41 1.34 2.18 0.00 0.00 8.64 0.90 2.83 4.87 2.19 0.00 1.82 1.55 0.80 0.38 2.67 23 E3a_E9a KnownJunction 0 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 24 ER4a ExonRegion 0 2.98 0.00 0.64 0.00 0.94 1.93 1.40 1.81 1.94 2.40 0.00 0.00 0.00 0.47 2.46 1.05 0.00 0.00 1.12 2.99 0.00 0.73 2.07 25 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 I4_AR2 ActiveIntronRegion 0 33.15 0.60 2.34 2.30 1.37 0.00 2.93 2.29 0.00 1.52 0.00 1.06 4.42 0.34 2.43 4.23 4.22 0.82 6.46 3.15 1.31 1.02 3.72 27 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 2.62 0.00 0.00 0.00 0.00 28 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER6a ExonRegion 0 0.96 0.00 0.78 0.87 2.29 0.00 2.27 0.00 0.79 1.46 0.00 0.00 0.00 1.39 0.88 1.27 1.41 3.06 0.00 1.82 0.00 1.33 0.00 30 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER7a ExonRegion 0 10.38 0.68 17.75 2.92 1.60 1.22 2.46 5.86 8.51 7.68 22.20 4.69 0.26 11.66 16.60 19.11 6.24 9.78 2.39 0.00 30.27 18.61 11.05 32 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 33 E7a_E9a KnownJunction 0 0.00 0.00 8.10 5.43 3.99 0.00 1.85 3.66 6.22 10.29 13.69 0.00 0.00 5.00 13.35 29.99 24.78 1.95 0.00 0.00 45.04 14.33 3.59 34 ER8a ExonRegion 0 4.44 0.61 0.55 1.22 1.61 0.00 2.38 3.09 1.66 2.05 0.00 0.00 0.00 0.52 0.72 4.46 1.98 6.53 2.87 1.91 1.32 0.69 0.88 35 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 36 ER9a ExonRegion 1 3.38 0.00 16.03 5.52 3.31 2.29 1.70 12.90 16.42 12.21 46.60 0.00 2.18 37.82 33.09 30.22 36.58 7.39 5.23 3.55 71.52 34.53 33.11 37 E9_Ab KnownBoundary 0 0.00 0.00 8.13 1.90 0.00 5.34 0.00 10.43 14.53 10.31 22.32 0.00 0.00 9.83 9.15 11.11 12.72 9.24 0.00 2.88 30.46 19.17 26.97 38 E9_Ac KnownBoundary 1 0.00 0.00 11.03 5.36 4.16 2.33 2.12 8.26 5.03 4.51 2.68 0.00 0.00 7.12 16.81 34.78 0.00 6.67 0.00 0.00 35.40 41.33 47.12 39 ER9b ExonRegion 1 0.00 0.00 24.51 5.45 2.68 9.17 1.32 17.28 16.06 13.76 32.86 0.00 4.69 81.21 63.83 71.33 16.50 12.93 9.56 2.13 72.72 91.67 93.97 40 ER9c ExonRegion 0 5.98 0.00 18.38 7.56 2.14 9.35 8.45 7.27 10.72 14.12 20.24 3.40 1.01 41.27 39.07 41.98 16.14 6.40 2.59 5.26 57.43 39.64 42.52 41 E9_Da KnownBoundary 0 0.00 0.00 10.20 4.00 3.82 6.64 16.16 7.39 6.83 1.05 19.64 0.00 0.00 28.84 10.01 18.46 17.58 4.19 0.00 2.81 34.72 27.49 20.57 42 E9_Db KnownBoundary 0 0.00 0.00 10.20 9.06 3.40 20.84 10.16 5.96 13.25 10.85 23.85 0.00 6.82 14.72 9.39 14.36 13.65 6.63 0.00 0.00 42.75 30.98 31.33 43 ER9d ExonRegion 0 0.42 1.63 24.26 13.63 5.35 22.01 23.57 11.75 21.24 19.50 45.62 8.66 14.07 67.56 38.30 49.93 40.93 11.09 1.91 5.11 84.18 52.09 43.46 44 ER9e ExonRegion 0 17.39 9.73 32.45 15.91 5.00 18.54 14.74 20.59 24.68 25.86 52.86 8.28 14.89 68.25 61.18 68.42 40.18 15.10 16.48 11.15 102.90 61.33 47.18 45 E9_Dc KnownBoundary 0 47.27 10.46 42.28 23.01 15.37 20.67 12.90 29.24 25.55 33.17 67.07 11.10 39.45 69.69 97.41 71.09 43.29 15.34 30.40 15.28 103.04 64.72 29.79 46 ER9f ExonRegion 1 24.14 4.08 41.57 15.45 4.49 8.23 3.20 22.32 20.77 26.63 57.68 6.88 22.98 76.04 55.43 59.69 39.98 18.72 12.25 7.65 110.66 60.47 73.84 47 E9_Dd KnownBoundary 0 34.52 0.00 71.79 27.00 0.00 7.50 2.16 17.33 35.18 30.60 72.81 6.30 31.98 55.68 49.82 49.82 38.24 21.64 19.58 3.26 123.68 77.77 66.92 48 ER9g ExonRegion 1 34.32 1.19 44.25 23.13 9.55 14.84 4.34 14.84 27.38 21.86 82.91 1.07 15.01 64.89 68.16 68.22 47.43 12.08 18.77 9.62 112.22 77.15 69.98 49 E9_De KnownBoundary 1 74.61 3.09 62.48 39.66 10.10 37.76 8.35 21.11 46.47 23.56 103.97 0.00 33.28 80.88 54.14 84.17 44.60 18.74 17.04 16.36 142.03 60.80 125.14 50 ER9h ExonRegion 0 76.52 7.00 87.83 35.87 24.43 29.70 19.19 44.52 50.21 32.60 99.92 28.94 48.59 95.43 82.36 94.19 53.72 32.43 26.31 11.93 163.40 110.59 127.73 51 E9_Ad KnownBoundary 1 59.20 2.89 151.86 45.28 45.33 68.54 38.33 67.07 59.43 54.26 94.97 96.93 143.82 103.66 114.47 261.04 59.19 50.03 32.38 9.20 143.39 235.01 358.18 52 ER9i ExonRegion 0 41.84 11.09 115.33 32.23 36.19 40.39 24.44 55.06 74.89 51.60 151.69 63.73 72.35 146.45 152.49 241.97 103.29 52.44 44.56 10.87 235.58 294.61 297.93 53 E9f_E10a KnownJunction 1 57.71 16.31 105.79 19.84 23.09 28.05 19.21 67.65 72.13 52.43 225.95 35.11 51.30 133.85 147.60 157.74 170.08 38.05 38.97 18.09 236.05 126.63 137.43 54 ER10a ExonRegion 0 205.79 18.73 113.45 45.67 55.14 48.06 41.33 57.13 78.57 46.37 151.57 42.64 101.88 139.37 99.55 213.69 93.11 47.43 33.58 11.11 208.44 205.35 243.92 55 E10_Da KnownBoundary 0 2.89 0.00 7.86 0.00 0.00 0.00 1.77 1.89 1.27 1.67 8.05 0.00 0.00 2.30 0.00 3.25 4.58 4.68 4.71 0.00 8.90 2.33 16.82 56 E10a_E11a KnownJunction 0 345.54 55.25 120.55 68.36 102.63 64.68 54.19 63.66 58.68 30.54 99.97 48.92 135.22 119.73 96.67 155.86 43.85 33.49 30.87 12.66 168.71 156.76 246.27 57 ER10b ExonRegion 0 8.83 2.38 4.64 3.95 3.47 0.71 6.39 1.07 3.15 1.43 4.28 5.82 10.39 4.09 2.19 8.17 3.71 2.25 2.63 1.38 6.69 7.85 9.53 58 E10_Db NovelBoundary 1 46.75 0.00 1.69 0.00 7.05 0.00 6.09 4.60 4.66 3.55 7.16 0.00 28.57 7.53 0.00 7.78 0.00 7.05 0.00 0.00 5.56 6.25 20.23 59 E11_Aa NovelBoundary 0 35.86 3.35 3.13 1.53 8.32 0.00 6.67 4.31 6.80 0.00 7.69 0.00 0.00 4.59 10.63 3.93 0.00 0.00 4.33 5.88 0.00 6.06 0.00 60 ER11a ExonRegion 0 234.93 43.50 104.76 64.86 104.35 69.11 53.89 68.02 70.96 38.34 114.12 53.82 134.82 132.64 96.71 164.05 64.59 29.89 39.72 10.85 155.08 179.35 188.75 61 E11a_E12a KnownJunction 1 294.72 70.45 96.06 62.80 163.58 89.44 88.99 52.57 81.05 37.20 114.40 87.33 174.50 210.61 127.20 229.60 109.12 22.97 43.39 8.50 178.72 227.12 249.26 62 ER12a ExonRegion 1 230.80 47.60 80.47 39.62 129.07 60.60 55.51 52.51 59.52 30.15 83.57 49.58 117.25 125.37 80.96 131.41 84.09 12.27 22.22 9.57 141.77 152.54 157.25 63 E12_Da NovelBoundary 0 137.43 12.50 31.43 11.39 52.21 25.55 24.20 23.33 31.77 10.18 21.74 21.61 30.68 30.67 13.60 40.67 38.71 4.73 24.94 2.56 56.71 69.74 39.78 64 E12b_E13a KnownJunction 1 191.14 32.63 61.47 20.34 119.61 39.13 36.96 45.22 36.14 23.67 80.34 36.46 134.89 100.18 54.52 95.36 58.72 6.18 11.67 16.04 87.60 118.79 109.86 65 ER12b ExonRegion 1 188.37 31.08 64.94 34.66 104.35 41.92 32.91 49.38 45.70 30.97 78.97 39.58 123.95 94.66 45.18 89.59 61.77 9.50 15.93 12.77 97.91 128.58 107.82 66 I12 Intron 0 54.53 8.50 7.97 17.34 21.94 6.90 14.39 11.92 9.28 8.04 7.27 6.03 10.03 10.47 4.47 12.64 3.73 3.80 5.63 1.60 6.21 9.48 9.94 67 I12_AR1 ActiveIntronRegion 0 54.61 8.51 7.98 17.36 21.97 6.91 14.41 11.93 9.29 8.05 7.28 6.04 10.05 10.49 4.47 12.66 3.73 3.81 5.64 1.60 6.22 9.49 9.96 68 E13_Aa NovelBoundary 0 134.76 21.38 6.77 28.73 71.05 10.85 28.09 20.25 6.86 4.57 2.68 5.70 12.82 19.84 0.00 18.71 14.96 1.53 4.80 0.00 3.15 5.57 16.22 69 ER13a ExonRegion 1 188.77 32.62 95.55 71.75 131.33 38.89 47.75 66.01 59.59 43.42 96.64 53.76 127.02 111.18 74.41 119.26 46.97 16.78 19.18 9.13 89.94 171.33 128.36 70 E13_Da KnownBoundary 0 308.94 50.91 158.39 133.65 196.60 40.66 80.64 103.79 94.15 60.73 122.56 87.18 129.37 148.16 146.98 165.34 51.43 28.52 24.00 5.82 91.49 319.82 174.74 71 ER13b ExonRegion 0 206.84 25.17 78.32 73.46 80.61 42.52 52.26 65.97 58.05 43.99 83.40 59.80 59.01 77.30 64.94 80.17 35.79 8.16 17.08 6.82 65.07 178.71 82.84 72 E13_Db KnownBoundary 0 20.08 0.00 10.11 9.56 0.00 7.55 10.42 2.34 5.70 9.05 0.00 19.06 0.00 4.94 0.00 7.35 0.00 0.00 4.80 5.50 8.03 28.72 12.29 73 ER13c ExonRegion 0 34.16 2.06 8.97 14.07 13.97 16.02 16.07 8.98 3.71 5.95 2.31 7.79 1.88 11.72 7.64 5.65 2.65 1.11 4.13 1.64 19.10 19.08 18.50 74 IG3 Intergenic 0 20.84 11.59 10.64 13.96 12.31 9.27 11.86 8.78 11.10 12.30 2.31 7.50 4.07 4.94 4.86 4.63 2.42 4.72 7.07 5.15 4.58 8.07 5.13 75 IG3_AR6 ActiveIntergenicRegion 0 42.68 2.90 10.12 14.33 15.95 13.10 17.58 10.17 13.76 7.90 1.79 3.36 3.25 8.49 7.99 8.74 2.50 2.01 2.41 2.50 14.63 23.62 14.80 76 IG3_AR5 ActiveIntergenicRegion 0 39.84 5.26 7.60 16.34 10.76 13.17 12.93 11.47 12.16 5.65 1.67 5.27 7.45 4.57 6.03 2.99 0.47 1.45 3.20 1.53 5.69 25.44 10.55 77 IG3_SR2 SilentIntergenicRegion 0 24.33 4.80 6.18 8.23 8.87 7.97 7.42 5.88 6.10 3.02 1.14 1.80 1.71 1.66 2.24 2.63 0.73 2.50 2.11 0.94 5.20 6.91 5.41 78 IG3_AR1 ActiveIntergenicRegion 0 21.01 38.99 27.08 30.47 27.31 18.48 24.16 15.77 25.17 37.98 6.49 24.66 9.57 11.64 10.46 9.40 7.07 15.02 21.23 16.26 4.40 3.75 3.99