Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FOXRED2 Gene 0 73.12 108.94 130.21 108.54 59.63 88.83 46.71 89.27 87.31 91.69 81.05 46.57 41.13 96.97 77.10 85.15 105.50 247.18 220.54 139.56 53.38 38.15 74.74 2 397224 Transcript 0 76.39 60.38 52.41 47.31 38.32 39.79 25.46 36.58 34.45 30.68 30.25 25.73 22.37 27.66 37.24 35.11 37.79 55.84 85.66 46.06 14.44 18.61 31.87 3 423980 Transcript 0 2.03 8.51 8.83 12.53 2.18 7.45 2.03 8.43 10.19 13.03 10.29 1.06 0.59 17.07 11.39 9.39 11.44 39.94 40.32 31.95 7.19 3.58 8.36 4 216187 Transcript 0 0.00 4.99 0.48 0.00 1.41 4.35 1.69 0.64 1.21 1.80 1.43 0.00 0.00 1.00 1.99 1.49 2.54 3.27 1.67 2.27 0.00 0.55 2.24 5 397223 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 366463 Transcript 0 1.82 5.40 5.51 3.22 2.28 1.44 2.78 5.88 1.86 2.58 5.14 0.88 1.74 1.77 3.21 4.80 4.92 7.20 5.01 6.56 1.63 1.86 3.11 7 ER1a ExonRegion 0 1.72 1.83 0.00 0.00 0.50 6.99 2.13 0.00 0.00 0.00 0.03 0.00 0.00 2.81 4.43 2.67 9.96 12.84 3.29 1.73 3.51 1.24 6.67 8 E1_Ab KnownBoundary 0 0.00 9.47 1.54 0.00 0.00 16.81 9.01 2.38 1.48 0.00 0.00 0.00 0.00 12.48 15.20 8.72 16.46 28.11 9.13 0.00 2.66 2.94 21.43 9 ER1b ExonRegion 0 0.30 4.07 0.00 0.26 5.99 11.96 6.24 0.00 0.00 0.22 4.33 0.00 0.00 7.66 10.22 9.48 13.36 18.74 5.61 1.52 1.89 2.58 18.04 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 11 E1a_E2c KnownJunction 0 0.00 0.00 0.00 1.60 11.80 7.78 4.20 3.86 2.60 0.00 17.37 0.00 0.00 4.59 8.90 11.54 9.54 13.14 4.52 5.82 5.87 3.12 11.78 12 ER1c ExonRegion 0 0.00 3.29 0.47 1.78 9.26 10.86 4.68 0.00 0.29 3.09 12.94 1.00 0.00 8.12 11.38 11.20 11.68 14.21 3.43 4.26 5.09 2.24 17.39 13 ER1d ExonRegion 0 0.00 4.07 0.96 0.00 2.81 6.09 3.37 1.28 1.10 2.51 2.87 0.00 0.00 2.01 3.98 2.97 5.07 2.93 3.35 4.54 0.00 1.10 4.48 14 E1b_E2c KnownJunction 0 0.00 5.92 0.00 0.00 0.00 2.61 0.00 0.00 1.33 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 15 Ix Intron 0 1.50 26.89 9.49 14.87 2.53 14.72 6.25 4.87 6.95 15.74 16.89 0.84 0.91 19.47 16.28 14.04 10.91 56.57 57.16 42.70 6.24 3.44 14.56 16 Ix_AR1 ActiveIntronRegion 0 1.51 27.14 9.57 15.00 2.55 14.86 6.31 4.91 7.02 15.89 17.04 0.85 0.92 19.64 16.43 14.17 11.01 57.08 57.69 43.10 6.30 3.48 14.70 17 E2_Aa NovelBoundary 0 3.41 8.09 30.13 14.92 23.43 22.15 25.00 23.29 11.52 34.01 24.59 5.85 0.00 19.48 8.90 8.12 24.96 69.97 30.78 33.24 15.81 8.51 18.44 18 ER2a ExonRegion 0 4.05 17.03 17.66 25.07 4.37 14.89 4.06 16.86 20.37 22.30 20.57 2.11 1.19 34.15 22.77 18.78 22.89 79.89 80.63 61.41 14.38 7.17 16.72 19 E2_Ab KnownBoundary 0 3.11 19.01 20.93 18.81 11.97 55.42 16.78 37.13 18.14 31.24 15.00 0.00 0.00 28.25 8.90 13.07 23.56 99.16 73.13 67.24 14.52 5.76 28.08 20 ER2b ExonRegion 0 1.78 45.21 14.72 17.28 9.18 27.83 15.47 21.90 16.47 22.06 12.93 3.44 0.83 34.93 19.06 17.17 22.34 94.56 50.76 44.46 14.19 6.78 26.35 21 E2_Ac KnownBoundary 0 0.00 79.46 24.19 20.74 4.33 16.47 11.66 23.29 24.07 33.93 24.53 0.00 12.82 32.55 27.94 16.66 39.55 139.28 64.00 63.47 15.26 11.33 35.94 22 ER2c ExonRegion 0 3.06 22.02 36.14 27.59 5.42 25.81 10.01 38.17 31.02 41.84 44.19 9.96 8.98 60.00 39.99 39.00 46.00 160.88 84.63 98.11 27.59 10.00 35.67 23 E2_Da KnownBoundary 0 13.93 40.72 64.99 55.27 11.38 60.08 15.81 72.91 82.29 88.97 72.18 6.30 13.47 80.46 59.21 46.83 95.09 181.57 113.98 244.23 33.11 18.13 55.74 24 ER2d ExonRegion 0 11.04 41.60 77.66 68.46 18.37 47.46 20.38 73.58 66.07 82.33 84.98 25.91 24.92 102.87 53.23 64.17 100.22 275.21 163.02 181.35 56.29 24.80 54.04 25 E2b_E3a KnownJunction 1 2.96 77.95 122.79 102.12 27.42 76.26 31.97 105.23 101.16 113.89 69.33 17.71 7.79 138.33 37.21 130.99 125.39 477.05 282.64 217.06 68.76 34.23 103.37 26 E2b_E5a NovelJunction 0 0.00 2.57 10.14 1.56 3.82 0.00 0.00 4.72 4.48 1.50 2.16 0.00 0.00 2.47 0.00 4.36 4.21 27.53 17.88 14.89 0.00 0.00 0.00 27 ER3a ExonRegion 0 14.38 57.59 113.59 105.75 27.05 88.65 39.51 92.01 101.62 119.33 116.27 46.80 35.32 130.97 73.03 125.40 141.69 454.03 265.88 210.02 86.36 48.52 107.85 28 E3a_E4a KnownJunction 1 10.30 50.12 108.98 97.42 24.19 52.70 25.00 79.64 98.29 97.70 150.62 18.76 36.69 113.31 56.37 80.66 170.17 294.28 225.70 201.66 47.94 37.05 91.85 29 E3a_E5a NovelJunction 0 2.82 12.30 11.68 13.85 24.11 18.51 6.76 15.61 30.12 21.57 9.63 12.15 13.64 26.72 8.90 10.60 16.64 56.92 30.02 41.29 9.08 0.00 4.10 30 ER4a ExonRegion 0 16.25 69.05 113.24 96.04 28.93 65.72 31.68 75.77 83.89 106.81 104.70 38.79 43.65 128.17 69.42 112.06 125.51 439.19 242.50 168.26 66.58 36.59 107.62 31 E4a_E5a KnownJunction 1 20.67 64.13 124.57 112.11 44.65 120.27 30.96 72.08 95.60 128.99 99.50 12.00 40.26 176.47 51.05 171.84 148.01 439.36 273.42 153.08 65.92 43.66 114.22 32 ER5a ExonRegion 0 20.54 80.48 108.13 95.77 40.41 101.81 47.27 86.18 99.01 129.62 104.21 29.48 35.81 146.24 70.64 92.17 150.24 343.60 290.67 164.52 77.08 40.49 86.60 33 E5a_E6b KnownJunction 0 28.23 151.68 93.52 99.22 7.98 69.51 35.20 100.59 98.12 127.41 95.45 54.02 34.09 103.54 61.93 94.68 156.15 255.23 265.98 163.56 65.48 26.27 83.06 34 ER6a ExonRegion 0 1.82 5.40 5.51 3.22 2.28 1.44 2.78 5.88 1.86 2.58 5.14 0.88 1.74 1.77 3.21 4.80 4.92 7.20 5.01 6.56 1.63 1.86 3.11 35 E6_Ab KnownBoundary 0 7.11 3.35 4.44 1.60 0.00 2.33 2.25 4.39 0.00 2.10 2.21 0.00 0.00 0.00 5.56 0.00 13.00 4.39 4.14 2.75 2.90 0.00 4.35 36 ER6b ExonRegion 0 13.57 80.47 96.86 77.43 33.52 95.00 31.86 77.93 81.34 84.48 75.72 30.91 26.26 107.44 67.54 85.20 98.91 270.47 181.10 132.98 56.46 30.66 59.98 37 E6a_E7a KnownJunction 0 28.45 88.73 139.76 129.92 57.47 117.55 47.52 125.56 114.21 118.30 93.50 48.62 33.11 151.86 103.59 156.71 122.67 481.61 307.87 174.17 82.16 37.05 99.02 38 E6a_E8a NovelJunction 0 0.00 0.00 2.66 1.23 3.57 2.90 1.85 6.08 6.19 2.93 5.21 0.00 0.00 7.42 0.00 4.02 4.77 23.21 7.53 14.64 0.00 5.57 7.51 39 ER7a ExonRegion 0 29.68 94.89 171.12 100.92 49.31 104.21 40.73 112.95 118.04 138.35 131.55 61.70 33.84 146.26 81.71 141.65 155.26 469.20 317.84 195.27 79.89 47.58 110.68 40 E7a_E8a KnownJunction 0 39.19 102.48 202.09 120.70 86.50 78.93 54.81 119.53 117.45 136.24 109.98 71.12 32.95 124.08 78.13 176.45 147.45 511.08 406.98 203.19 92.91 38.70 113.79 41 E8_Aa NovelBoundary 0 2.89 24.54 61.91 43.28 14.09 23.34 14.66 52.45 40.10 53.94 36.96 5.85 0.00 16.72 5.19 49.90 34.78 161.54 97.70 74.91 41.58 7.72 21.08 42 ER8a ExonRegion 0 21.49 94.76 145.82 114.34 43.14 96.09 38.46 113.46 109.69 127.65 101.89 49.47 34.48 135.60 75.01 104.58 138.68 389.57 293.85 190.89 82.88 39.95 82.48 43 E8_Da NovelBoundary 0 3.41 5.72 6.77 6.83 0.00 0.00 2.12 6.00 2.55 2.87 9.79 31.96 0.00 14.66 0.00 4.36 3.93 13.56 9.04 12.53 0.00 3.12 0.00 44 E8a_E9a KnownJunction 0 16.45 126.03 178.53 149.17 88.71 182.45 75.78 141.17 126.36 142.07 96.39 51.62 38.96 154.39 79.24 78.95 127.35 470.41 374.79 232.59 79.63 59.21 117.03 45 ER9a ExonRegion 0 17.72 96.77 146.85 116.34 44.85 82.29 33.93 99.76 101.23 125.52 92.87 37.25 23.08 121.23 73.27 88.94 129.40 349.64 213.74 162.70 81.55 39.28 86.19 46 E9_Da KnownBoundary 1 30.60 155.70 160.73 157.02 55.43 124.76 48.71 121.74 127.83 162.06 94.29 23.26 0.00 160.93 115.21 110.83 115.19 504.49 220.24 177.11 87.54 39.01 141.36 47 ER9b ExonRegion 0 76.86 162.87 201.88 169.80 85.06 116.56 62.89 126.02 121.70 115.51 104.42 59.50 49.86 125.48 105.59 105.76 141.04 305.17 278.24 171.52 70.68 50.88 93.60 48 E9_Db KnownBoundary 0 272.64 219.43 108.07 117.77 209.51 281.71 134.65 68.10 51.39 73.44 79.13 84.93 27.76 83.29 68.73 76.13 72.93 93.44 195.96 84.12 22.18 34.78 45.67 49 ER9c ExonRegion 0 76.12 112.48 122.13 88.75 107.94 166.47 84.49 82.96 74.50 81.96 73.66 54.20 79.18 87.34 96.38 82.84 105.10 141.32 272.16 107.13 52.32 35.89 79.82 50 E9_Dc KnownBoundary 0 55.71 113.01 104.58 85.74 92.53 158.03 103.08 110.69 64.73 90.93 68.65 81.48 87.01 79.76 55.01 38.88 91.54 106.25 192.10 54.97 30.83 16.35 73.67 51 ER9d ExonRegion 0 227.46 179.33 157.22 140.34 102.67 104.61 70.06 105.87 100.73 92.04 73.33 77.18 67.12 75.57 98.40 91.13 93.88 141.53 249.18 130.63 33.95 51.46 77.17 52 IG22_AR1 ActiveIntergenicRegion 0 3.36 17.55 12.92 9.06 10.44 1.32 3.06 14.86 4.22 8.13 3.35 6.29 0.56 1.32 0.69 1.25 3.30 11.48 12.43 10.12 0.64 0.90 3.82