Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	CBX7	Gene	0	43.56	10.27	8.36	33.75	31.93	35.77	10.91	29.54	39.40	16.65	21.00	4.65	15.06	13.30	25.90	13.92	30.44	19.05	3.16	8.41	25.12	43.41	47.11
2	482294	Transcript	0	9.73	2.29	1.28	5.52	4.94	2.96	2.97	6.93	5.60	2.48	4.30	1.69	4.44	5.50	10.24	7.09	10.37	5.65	1.13	3.06	3.92	2.01	4.51
3	216133	Transcript	0	89.61	19.20	17.11	68.98	64.24	73.08	19.80	53.71	74.54	31.18	37.32	8.15	25.86	18.77	39.66	17.27	49.30	32.07	4.15	13.70	46.36	87.07	90.76
4	434260	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	477827	Transcript	0	2.57	3.73	0.74	4.98	6.50	6.39	1.93	7.64	13.71	3.91	3.53	0.88	1.74	3.48	5.62	4.50	4.01	4.85	1.29	2.24	11.47	8.58	8.19
6	446509	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	401405	Transcript	0	0.00	0.00	0.00	0.00	8.23	0.00	0.00	1.93	4.25	0.00	0.00	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.00	0.00	2.66	3.12	0.00
8	475962	Transcript	0	0.13	0.64	0.11	3.18	3.75	2.41	0.08	1.13	2.18	0.54	2.25	0.41	0.24	0.75	2.59	0.19	0.62	0.00	0.00	0.27	2.47	2.28	0.55
9	490741	Transcript	0	0.98	0.11	2.21	3.17	1.75	8.18	1.06	3.94	6.86	2.71	2.47	0.00	0.00	0.09	1.45	1.91	8.16	5.86	0.00	2.48	6.72	8.41	10.99
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.77	0.00	0.00	0.00	1.41	0.00	0.00
11	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	1.31	1.43	0.00	0.00	5.37	0.00	2.01
12	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	4.71	0.00	0.00	0.00	0.00	2.16	0.00	0.00	0.00	0.00	3.50	4.77	0.00	0.00	0.00	2.53	0.00	7.77
14	ER1c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	14.36	0.00	0.00	0.00	0.00	2.42	0.00	0.00	0.00	0.00	2.97	3.30	1.54	0.00	0.00	5.14	0.52	21.54
15	ER1d	ExonRegion	0	0.35	2.56	0.00	0.00	0.26	26.35	0.00	0.00	0.52	0.66	4.16	0.00	0.00	2.38	0.60	5.74	5.70	4.48	2.23	0.52	14.55	5.77	42.72
16	E1_Ae	KnownBoundary	0	0.00	3.29	0.00	1.70	3.74	5.34	0.00	0.00	1.24	1.67	0.00	0.00	0.00	6.77	5.07	0.00	4.68	0.00	0.00	2.56	8.22	10.72	16.90
17	E1_Af	KnownBoundary	0	7.56	3.35	0.00	1.63	8.32	7.67	0.00	3.45	10.68	2.98	7.42	0.00	0.00	0.00	4.45	4.27	17.39	0.00	0.00	3.20	8.71	5.76	15.88
18	ER1e	ExonRegion	0	4.23	3.63	0.00	0.18	5.93	7.97	0.00	1.43	5.80	3.24	5.38	0.00	0.00	6.43	4.92	2.58	12.63	2.25	0.00	3.98	11.02	6.52	18.13
19	ER1f	ExonRegion	0	4.11	3.98	1.73	3.93	9.25	8.20	0.60	6.20	16.78	9.87	17.96	0.00	1.03	4.71	8.87	10.71	18.20	8.78	0.56	4.13	24.86	10.88	14.34
20	E1a_E2a	KnownJunction	0	7.11	5.99	5.00	4.00	11.71	2.90	2.16	12.20	30.50	16.92	12.42	0.00	6.66	2.47	18.79	7.69	13.18	10.69	3.86	2.68	56.03	13.29	15.11
21	E2_Aa	NovelBoundary	0	13.56	0.00	0.00	7.79	0.00	0.00	2.25	6.45	11.20	4.22	5.05	5.70	0.00	17.07	43.51	7.60	26.37	2.57	0.00	0.00	0.00	0.00	0.00
22	ER2a	ExonRegion	0	13.23	5.45	6.10	13.29	14.23	6.96	1.69	21.84	37.47	15.67	22.93	0.00	7.35	11.77	33.03	8.24	22.43	18.90	7.53	2.03	41.97	40.06	56.66
23	E2_Da	KnownBoundary	1	31.64	6.38	1.83	5.63	7.64	7.04	2.03	19.47	9.14	2.69	6.69	0.00	0.00	8.89	59.46	3.93	3.93	8.91	0.00	5.37	2.97	5.39	11.01
24	E2a_E3a	KnownJunction	0	3.78	5.53	3.05	15.58	3.40	2.61	0.00	17.95	26.01	9.51	21.74	5.40	0.00	4.94	13.72	11.19	27.12	8.46	4.71	2.56	30.83	53.33	89.03
25	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E2a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	3.74	0.00	0.00	0.00	0.00	0.00	2.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.15	3.12	0.00
27	ER2b	ExonRegion	0	19.45	4.58	2.56	11.04	9.88	5.92	5.95	13.85	11.20	4.97	8.60	3.39	8.88	11.00	20.48	14.17	17.96	11.30	2.25	6.12	6.42	4.02	9.02
28	E2_Db	NovelBoundary	0	23.19	5.59	1.66	4.56	7.22	2.73	1.63	0.00	3.15	0.00	0.00	0.00	0.00	2.47	4.45	4.10	0.00	2.24	0.00	0.00	0.00	2.76	0.00
29	I2_SR1	SilentIntronRegion	0	12.40	1.34	1.52	5.63	3.80	2.29	3.22	5.80	4.72	1.72	5.23	1.24	4.31	6.74	6.66	4.53	7.55	4.11	1.21	2.51	3.59	1.23	3.97
30	ER3a	ExonRegion	0	3.50	7.12	4.88	16.89	5.39	14.64	2.41	19.98	43.57	14.25	14.26	0.00	8.53	10.31	14.51	14.19	27.71	6.97	1.79	4.35	42.74	36.90	55.31
31	E3_Da	KnownBoundary	0	0.00	2.83	1.80	13.68	0.00	13.46	1.72	7.60	26.59	8.73	2.05	0.00	0.00	2.47	4.45	16.24	0.00	0.00	0.00	2.43	16.62	10.84	7.94
32	E3a_E4a	KnownJunction	0	3.78	3.29	5.80	13.48	4.33	14.03	2.25	7.93	40.10	10.99	18.22	0.00	0.00	19.19	25.34	11.88	25.71	2.53	0.00	0.00	24.90	37.90	28.51
33	ER3b	ExonRegion	0	2.57	3.73	0.74	4.98	6.50	6.39	1.93	7.64	13.71	3.91	3.53	0.88	1.74	3.48	5.62	4.50	4.01	4.85	1.29	2.24	11.47	8.58	8.19
34	E3_Db	NovelBoundary	0	6.82	2.83	8.34	11.55	14.35	24.53	0.00	26.90	34.32	14.02	14.16	0.00	0.00	7.95	12.11	7.26	3.55	11.61	0.00	2.56	23.29	9.06	23.90
35	Ix	Intron	0	17.60	10.35	4.65	23.78	15.44	21.47	6.97	28.20	29.52	13.78	9.02	3.05	4.28	6.87	8.52	7.82	15.97	22.68	2.16	8.31	16.64	18.39	24.92
36	Ix_SR1	SilentIntronRegion	0	17.55	11.81	5.24	25.45	16.82	25.51	7.32	35.37	28.81	11.45	12.31	3.58	4.99	7.21	7.50	11.24	21.69	23.16	3.07	9.40	16.80	16.79	25.12
37	Ix_AR1	ActiveIntronRegion	0	17.69	9.32	4.23	22.63	14.47	18.58	6.73	23.01	30.12	15.53	6.64	2.67	3.78	6.65	9.28	5.33	11.81	22.40	1.50	7.53	16.57	19.61	24.83
38	E4_Aa	NovelBoundary	0	20.45	3.09	11.47	12.05	33.45	23.40	9.49	23.41	23.90	21.09	7.63	6.75	13.64	7.12	13.35	0.00	16.18	13.22	3.95	2.56	16.62	11.63	12.29
39	ER4a	ExonRegion	0	19.62	11.69	5.93	18.61	17.17	24.61	2.37	10.84	45.11	16.55	18.84	2.71	0.00	14.35	19.75	19.25	31.38	7.28	0.00	7.78	33.19	58.71	36.34
40	E4_Da	NovelBoundary	1	5.93	0.00	11.03	25.57	19.52	8.01	8.35	21.11	16.46	18.05	2.68	0.00	6.82	0.00	8.90	0.00	21.97	16.62	0.00	0.00	9.20	10.78	19.21
41	E4a_E5b	KnownJunction	0	3.26	9.80	6.65	22.81	0.00	23.91	1.68	14.46	37.85	19.37	4.42	0.00	0.00	4.18	11.25	7.43	43.20	5.97	0.00	2.56	25.21	27.25	0.00
42	E4a_E5c	KnownJunction	0	0.00	0.00	0.00	0.00	8.23	0.00	0.00	1.93	4.25	0.00	0.00	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.00	0.00	2.66	3.12	0.00
43	Ix	Intron	0	5.54	4.56	3.55	7.59	9.00	6.45	4.65	11.36	12.94	4.60	4.34	2.09	5.55	3.69	8.83	4.22	9.13	8.38	1.19	2.70	8.40	10.44	16.69
44	Ix_AR1	ActiveIntronRegion	0	6.98	5.73	3.40	7.36	10.06	6.68	4.41	11.07	17.02	7.09	4.64	1.06	4.24	3.91	8.65	3.53	8.23	7.25	1.16	3.52	11.38	9.18	12.85
45	Ix_SR1	SilentIntronRegion	0	4.55	3.76	3.67	7.78	8.29	6.30	4.83	11.60	10.14	2.89	4.14	2.82	6.48	3.54	8.98	4.72	9.78	9.18	1.21	2.14	6.36	11.34	19.39
46	E5_Ab	NovelBoundary	0	7.41	2.83	7.92	3.80	3.99	2.33	0.00	7.23	10.13	2.87	0.00	0.00	0.00	0.00	0.00	0.00	4.77	4.06	0.00	3.26	8.77	0.00	4.18
47	ER5a	ExonRegion	0	1.97	0.22	4.42	2.24	0.19	1.38	0.05	2.78	7.01	2.62	0.21	0.00	0.00	0.17	2.90	0.32	3.89	1.98	0.00	1.90	4.80	1.26	2.94
48	ER5b	ExonRegion	0	8.92	3.61	7.86	20.68	5.53	15.81	3.48	17.81	34.79	16.79	15.60	3.00	8.66	10.21	19.81	7.76	27.48	12.43	0.79	2.76	26.31	42.75	31.25
49	E5_Da	KnownBoundary	0	3.70	0.00	2.19	12.12	0.00	4.26	1.94	14.33	21.01	9.27	0.00	0.00	0.00	2.53	0.00	8.29	4.49	12.39	0.00	5.50	6.12	18.13	3.24
50	E5_Db	KnownBoundary	0	0.00	0.00	1.36	17.08	3.31	9.31	2.21	4.07	10.47	10.77	2.05	0.00	0.00	2.59	5.19	0.00	8.42	24.54	4.42	0.00	7.41	7.47	26.04
51	ER5c	ExonRegion	0	6.35	0.00	7.35	29.98	13.38	27.51	6.62	22.47	27.17	21.79	9.66	0.00	18.76	8.12	29.01	8.92	16.50	33.26	6.37	6.38	22.04	58.34	67.54
52	ER5d	ExonRegion	0	7.17	2.69	5.77	23.79	11.82	32.89	9.05	22.13	27.82	17.62	15.02	1.80	10.55	16.39	34.45	9.13	26.65	22.38	3.52	7.29	28.10	56.99	61.55
53	E5_Ac	KnownBoundary	0	11.11	6.64	7.42	16.28	36.33	104.37	14.62	40.70	35.71	17.62	34.01	0.00	13.64	14.54	17.80	7.69	25.53	22.72	0.00	3.26	47.14	41.27	57.19
54	ER5e	ExonRegion	1	8.17	1.38	7.34	8.14	19.44	41.29	4.01	16.20	23.35	11.74	19.84	0.90	6.90	10.78	24.14	4.75	32.23	13.14	1.50	3.87	31.53	52.81	37.61
55	E5c_E6a	KnownJunction	0	13.78	3.35	5.97	11.95	7.98	15.16	1.77	11.34	18.08	5.21	12.85	6.30	5.68	7.42	18.05	3.93	30.76	17.91	4.52	3.07	18.53	53.58	42.51
56	E5c_E6b	KnownJunction	0	0.00	0.00	0.00	4.10	3.31	14.99	2.08	5.09	6.71	2.79	4.74	0.00	0.00	0.00	0.00	3.50	12.44	9.74	0.00	3.07	8.65	15.55	19.04
57	I5_AR1	ActiveIntronRegion	0	2.43	1.17	2.09	5.43	5.62	4.55	1.77	8.86	7.03	2.94	2.21	0.00	2.95	1.33	4.85	1.70	7.57	4.21	1.22	4.06	7.57	7.56	9.54
58	ER6a	ExonRegion	0	11.11	6.10	6.13	10.22	8.03	20.63	4.30	13.40	22.54	8.03	19.33	7.58	4.69	7.71	15.23	3.72	18.98	19.40	3.19	2.66	23.14	53.13	45.52
59	ER6b	ExonRegion	0	32.69	13.06	6.92	29.98	48.47	60.54	16.47	39.38	58.87	24.51	34.79	2.64	25.27	19.18	21.57	21.20	41.29	26.86	7.34	8.16	29.27	82.71	96.90
60	E6_Da	KnownBoundary	1	16.82	8.29	12.00	28.60	40.07	22.09	9.85	32.33	64.21	19.69	26.64	6.30	33.60	9.59	10.63	7.86	83.87	8.75	7.53	13.29	38.18	70.72	57.96
61	ER6c	ExonRegion	0	30.01	11.88	8.62	36.48	41.11	53.06	10.95	49.83	80.02	36.64	38.31	2.35	21.04	16.26	23.70	18.50	67.25	24.33	15.87	12.33	50.81	88.70	67.60
62	E6_Db	KnownBoundary	0	89.35	24.47	7.84	76.91	71.56	131.86	19.87	118.70	116.35	36.77	26.59	0.00	6.82	33.08	70.21	48.11	67.88	66.20	29.08	14.96	49.24	137.04	172.69
63	ER6d	ExonRegion	0	89.61	19.20	17.11	68.98	64.24	73.08	19.80	53.71	74.54	31.18	37.32	8.15	25.86	18.77	39.66	17.27	49.30	32.07	4.15	13.70	46.36	87.07	90.76
64	ER7a	ExonRegion	0	0.27	1.27	0.23	6.36	3.76	4.83	0.17	2.26	4.37	1.07	1.81	0.83	0.48	1.51	5.18	0.37	1.24	0.00	0.00	0.53	1.79	1.44	1.10