Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TIMP3 Gene 0 695.21 217.45 197.16 377.89 382.17 347.33 201.47 309.02 996.13 153.51 0.09 0.00 0.04 0.00 0.00 0.13 0.00 691.19 66.53 29.73 5028.80 2296.21 1464.43 2 266085 Transcript 0 128.67 56.47 110.49 210.33 55.46 132.24 45.17 205.54 955.20 152.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1101.09 74.04 18.79 7353.63 2645.15 2153.13 3 382049 Transcript 0 6.77 2.28 3.84 5.86 1.86 2.92 1.66 5.45 28.03 5.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.46 1.83 3.68 194.23 69.73 56.42 4 ER1a ExonRegion 0 4.66 2.03 0.18 2.86 1.61 6.88 3.71 2.25 9.26 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.92 0.48 0.64 444.60 27.81 78.85 5 ER1b ExonRegion 0 15.43 11.77 22.71 18.72 12.65 38.63 11.24 30.54 137.95 32.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 217.20 8.99 6.19 2357.28 323.19 337.68 6 E1a_E2a KnownJunction 0 140.40 65.65 77.38 94.96 51.53 105.85 43.94 103.18 610.32 112.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 756.77 21.37 6.20 5458.40 1002.21 794.22 7 Ix Intron 0 25.02 10.97 16.86 11.63 16.93 6.13 15.11 18.39 45.08 20.03 0.03 0.00 0.05 0.00 0.00 0.35 0.00 29.19 8.21 20.46 34.78 6.58 33.95 8 Ix_SR2 SilentIntronRegion 0 23.13 14.41 16.10 12.02 14.94 6.96 14.39 17.53 45.84 24.97 0.00 0.00 0.00 0.00 0.00 0.59 0.00 29.16 7.38 22.74 37.88 6.35 25.50 9 Ix_AR3 ActiveIntronRegion 0 21.30 11.43 14.76 13.76 13.68 9.71 18.80 23.40 50.16 27.50 0.00 0.00 0.00 0.00 0.00 1.21 0.00 31.18 9.25 33.71 39.70 6.32 38.85 10 Ix_SR3 SilentIntronRegion 0 19.24 8.62 12.68 10.36 13.66 6.06 15.71 17.25 56.24 20.74 0.00 0.00 0.00 0.00 0.00 0.54 0.00 38.97 7.92 21.15 50.55 4.75 38.16 11 Ix_AR6 ActiveIntronRegion 0 46.65 23.99 37.07 30.20 30.47 8.61 23.33 29.03 78.76 32.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.23 10.91 31.38 47.85 12.61 49.69 12 Ix_SR5 SilentIntronRegion 0 125.16 31.85 57.49 29.07 47.02 10.73 29.77 36.17 70.53 33.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.67 11.76 22.68 44.12 9.55 51.18 13 Ix Intron 0 19.72 14.10 18.09 22.17 19.21 11.93 19.50 26.86 44.49 32.76 0.13 0.00 0.05 0.00 0.00 0.35 0.00 30.54 6.60 24.33 44.86 6.68 29.03 14 Ix_AR1 ActiveIntronRegion 0 266.98 42.26 66.88 51.33 83.56 21.22 58.60 55.26 92.01 45.31 0.00 0.00 0.00 0.00 0.00 0.33 0.00 24.17 7.16 27.49 26.24 22.00 35.96 15 Ix_SR1 SilentIntronRegion 0 55.33 40.65 40.71 28.11 39.07 10.81 29.86 28.38 65.09 32.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.21 4.90 31.62 48.55 6.41 36.13 16 Ix_AR2 ActiveIntronRegion 0 43.04 32.98 31.86 31.08 34.79 13.44 30.46 36.39 78.50 31.92 0.21 0.00 0.00 0.00 0.00 0.32 0.00 40.27 8.86 24.02 46.68 10.82 40.39 17 Ix_SR2 SilentIntronRegion 0 36.82 17.03 31.12 26.51 35.86 15.20 32.70 37.24 92.50 36.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.47 10.25 31.17 65.85 10.95 54.15 18 Ix_AR3 ActiveIntronRegion 0 23.91 20.59 24.11 25.92 35.23 12.11 30.03 37.19 85.59 38.41 0.04 0.00 0.00 0.00 0.00 0.53 0.00 46.08 10.39 32.98 45.75 14.02 42.45 19 Ix_SR3 SilentIntronRegion 0 3.53 8.13 11.92 11.36 24.65 11.95 26.92 27.34 42.59 24.47 1.93 0.00 0.00 0.00 0.00 0.00 0.00 34.32 10.42 24.05 45.01 11.49 25.72 20 Ix_AR4 ActiveIntronRegion 0 9.87 11.38 20.94 17.38 18.81 11.84 18.85 29.84 62.94 42.29 0.01 0.00 0.00 0.00 0.00 0.61 0.00 49.29 7.85 22.98 62.44 4.93 42.02 21 Ix_SR4 SilentIntronRegion 0 7.51 11.09 12.75 15.66 15.28 11.83 14.99 27.03 46.64 30.60 0.00 0.00 0.00 0.00 0.00 0.48 0.00 31.51 7.56 25.90 39.43 8.31 37.61 22 Ix_AR5 ActiveIntronRegion 0 18.17 17.84 26.61 31.62 19.99 15.40 25.52 43.67 70.79 50.61 0.00 0.00 0.00 0.00 0.00 0.85 0.00 41.64 7.88 33.00 48.39 8.19 41.03 23 Ix_AR6 ActiveIntronRegion 0 43.23 43.87 37.83 53.39 60.94 24.94 45.44 58.25 87.17 65.66 0.10 0.00 0.00 0.00 0.00 0.00 0.00 39.87 3.03 51.54 48.04 5.78 31.57 24 Ix_AR7 ActiveIntronRegion 0 34.24 28.11 37.77 55.16 55.88 37.43 38.08 52.26 99.39 69.49 1.93 0.00 0.00 0.00 0.00 0.00 0.00 49.45 6.00 45.93 39.93 5.39 38.69 25 Ix_SR5 SilentIntronRegion 0 26.56 15.91 27.15 31.74 23.46 16.72 21.94 34.07 55.44 38.13 0.26 0.00 0.00 0.00 0.00 1.12 0.00 32.36 4.94 23.38 41.00 9.91 32.29 26 Ix_AR8 ActiveIntronRegion 0 27.33 26.68 37.70 44.13 26.76 26.70 28.85 46.97 53.87 72.59 0.00 0.00 0.00 0.00 0.00 2.97 0.00 61.79 8.06 51.31 50.17 6.99 44.40 27 Ix_AR9 ActiveIntronRegion 0 17.07 21.96 19.93 40.89 14.45 27.38 19.95 48.17 50.31 69.81 0.00 0.00 0.00 0.00 0.00 0.59 0.00 69.35 0.00 42.84 59.50 5.69 37.39 28 Ix_AR10 ActiveIntronRegion 0 18.40 12.89 30.29 21.12 22.39 14.18 16.16 42.47 47.30 59.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.41 5.15 21.25 46.28 4.44 31.40 29 Ix_AR11 ActiveIntronRegion 0 19.38 17.86 35.40 36.29 16.51 14.52 10.46 41.52 48.97 72.03 0.00 0.00 0.00 0.00 0.00 0.57 0.00 47.91 4.91 36.43 55.57 4.27 37.57 30 Ix_AR12 ActiveIntronRegion 0 11.17 26.55 54.19 57.92 15.61 14.16 24.05 61.17 59.63 81.11 0.00 0.00 0.00 0.00 0.00 2.97 0.00 53.07 4.25 13.24 69.05 11.11 46.50 31 Ix_AR13 ActiveIntronRegion 0 10.23 25.81 41.52 40.40 30.94 13.40 20.32 49.64 61.57 53.14 0.00 0.00 0.00 0.00 0.00 3.77 0.00 46.55 5.84 20.27 56.90 7.56 30.50 32 Ix_AR16 ActiveIntronRegion 0 13.23 11.59 18.38 34.48 19.13 5.23 15.56 36.30 48.05 30.51 1.35 0.00 0.00 0.00 0.00 0.00 0.00 15.52 7.64 23.72 30.08 6.67 21.73 33 Ix_SR6 SilentIntronRegion 0 30.17 20.97 27.78 34.09 26.23 12.98 23.37 44.65 64.06 50.28 0.11 0.00 0.00 0.00 0.00 0.62 0.00 35.45 8.68 22.72 48.60 6.84 33.77 34 Ix_AR17 ActiveIntronRegion 0 7.69 8.70 17.16 17.28 10.49 6.54 13.20 33.11 60.35 41.48 0.05 0.00 0.00 0.00 0.00 0.44 0.00 54.89 3.82 23.51 75.34 7.37 40.27 35 Ix_SR7 SilentIntronRegion 0 7.74 8.46 14.36 14.12 13.33 10.01 13.69 26.77 46.93 29.54 0.33 0.00 0.00 0.00 0.00 0.00 0.00 42.24 5.06 22.24 70.25 3.47 39.09 36 Ix_AR19 ActiveIntronRegion 0 13.16 8.69 14.34 13.39 1.94 4.49 14.98 15.32 29.50 31.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.60 4.00 15.85 78.69 3.47 28.27 37 Ix_SR8 SilentIntronRegion 0 10.65 11.83 13.43 20.83 15.16 10.04 16.69 23.78 35.08 33.78 0.14 0.00 0.38 0.00 0.00 0.15 0.00 21.68 5.91 23.06 36.35 5.21 24.89 38 Ix_AR21 ActiveIntronRegion 0 10.38 13.66 20.20 29.15 23.84 15.94 19.05 33.55 41.43 36.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.68 6.72 32.12 66.33 4.80 27.32 39 Ix_SR9 SilentIntronRegion 0 5.02 7.47 9.00 14.18 10.36 10.79 15.43 16.07 30.14 26.66 0.15 0.00 0.10 0.00 0.00 0.24 0.00 27.06 6.40 24.19 45.13 5.16 25.11 40 Ix_AR22 ActiveIntronRegion 0 1.03 7.05 9.19 9.69 3.64 18.08 18.74 19.82 25.71 34.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.66 12.74 26.03 34.12 6.97 19.23 41 Ix_SR10 SilentIntronRegion 0 5.28 7.26 8.41 11.36 10.33 8.66 13.11 12.37 18.41 17.35 0.05 0.00 0.00 0.00 0.00 0.25 0.00 16.96 4.96 21.61 29.75 4.17 18.80 42 Ix_AR24 ActiveIntronRegion 0 6.23 15.24 9.35 16.46 14.08 6.69 14.44 25.19 17.98 18.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.05 6.94 20.33 42.39 2.13 17.41 43 Ix_SR11 SilentIntronRegion 0 9.31 11.36 10.56 19.97 15.93 12.51 16.76 14.39 21.67 19.63 0.23 0.00 0.00 0.00 0.00 0.10 0.00 20.65 5.01 22.34 38.72 5.75 18.51 44 Ix_AR25 ActiveIntronRegion 0 3.16 4.45 5.96 6.36 9.84 9.72 8.91 11.44 15.65 17.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.66 8.96 23.92 43.39 5.26 17.35 45 Ix_SR12 SilentIntronRegion 0 3.21 2.34 5.02 7.92 4.89 8.67 8.35 11.84 15.74 14.55 0.33 0.00 0.00 0.00 0.00 0.00 0.00 21.51 6.99 22.67 33.54 8.00 16.52 46 E2_Aa NovelBoundary 0 3.04 0.00 2.54 9.59 0.00 0.00 3.58 6.20 18.06 10.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.86 0.00 32.02 43.86 0.00 11.10 47 ER2a ExonRegion 0 124.49 58.51 94.59 107.49 64.06 90.81 38.17 132.01 712.08 129.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 973.92 38.99 18.12 6627.43 1710.54 1415.43 48 E2_Da NovelBoundary 0 14.60 2.43 5.06 1.96 0.00 5.74 9.94 6.08 16.32 19.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.32 0.00 20.58 46.95 9.37 4.27 49 E2a_E3a KnownJunction 0 152.84 80.51 107.48 143.27 92.02 117.49 72.82 167.95 952.04 141.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1110.12 66.92 14.00 7222.95 2044.77 1664.50 50 Ix_SR1 SilentIntronRegion 0 2.58 4.04 3.16 4.77 4.24 3.75 7.26 6.58 19.29 11.02 0.37 0.00 0.00 0.00 0.00 0.95 0.00 19.87 7.95 21.73 41.88 8.80 15.65 51 E3_Aa NovelBoundary 0 10.00 15.92 12.65 4.59 16.98 0.00 19.52 18.81 46.44 13.75 0.00 0.00 0.00 0.00 0.00 7.69 0.00 36.19 4.71 29.98 77.28 39.92 29.71 52 ER3a ExonRegion 0 80.56 58.43 112.38 187.23 68.73 198.72 76.60 196.72 1005.88 164.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1014.50 43.66 26.50 8599.29 1907.52 1424.40 53 E3a_E4a KnownJunction 0 83.57 43.35 152.71 236.73 108.83 289.21 93.58 226.11 1141.13 179.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1280.95 40.75 5.75 9220.58 2323.08 1865.53 54 ER4a ExonRegion 0 69.08 49.92 156.32 230.34 89.32 182.06 58.62 261.30 1223.62 180.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1598.74 71.06 30.34 8943.90 2750.44 2317.56 55 E4_Da NovelBoundary 0 86.02 63.80 163.54 270.96 66.13 198.58 54.01 249.89 1208.23 180.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1482.58 73.23 37.33 8711.66 3083.35 2582.66 56 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E4b_E5b KnownJunction 0 239.30 93.27 177.52 340.52 89.30 212.26 71.90 326.13 1514.86 243.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1601.01 121.23 29.79 11230.82 4232.46 3360.15 58 ER4b ExonRegion 0 142.06 74.10 153.76 287.62 75.46 177.59 59.90 288.24 1341.48 211.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1667.34 100.40 25.96 10385.46 3675.16 3020.40 59 ER5a ExonRegion 0 13.53 4.56 7.69 11.73 3.73 5.83 3.33 10.89 56.07 10.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.93 3.67 7.35 388.45 139.47 112.84 60 E5_Ab KnownBoundary 0 23.63 3.35 5.71 6.93 0.00 0.00 5.79 4.27 28.65 10.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.78 0.00 9.72 101.13 42.92 49.17 61 ER5b ExonRegion 0 824.74 254.95 223.92 435.96 451.09 399.21 235.61 350.52 1096.45 167.25 0.10 0.00 0.05 0.00 0.00 0.16 0.00 704.79 74.32 32.88 5099.34 2535.22 1571.13