Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXO7 Gene 0 138.76 101.35 92.81 115.54 105.73 88.27 71.31 94.07 173.48 88.54 155.36 141.63 150.74 135.47 140.64 133.12 117.70 84.17 98.71 69.77 75.22 107.79 72.43 2 420700 Transcript 0 3.33 0.00 9.34 7.03 3.31 10.73 6.23 19.72 27.60 14.69 0.00 7.65 0.00 12.42 0.00 8.20 14.21 13.35 0.00 5.37 5.31 3.12 3.16 3 266087 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 425028 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 437452 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 492535 Transcript 0 71.38 52.28 28.71 62.66 61.83 25.67 27.85 32.60 85.53 23.09 34.39 61.93 63.68 23.44 15.09 30.00 22.36 13.62 10.55 24.76 11.98 40.68 15.71 7 452138 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 382058 Transcript 0 2.12 2.03 2.45 2.04 1.34 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 9 397426 Transcript 1 13.71 2.89 5.06 4.13 3.06 2.16 0.00 13.80 39.87 11.28 9.16 5.25 52.76 14.83 9.02 11.45 13.18 8.95 8.28 0.00 20.32 7.78 0.00 10 444207 Transcript 0 1.33 1.42 3.19 0.43 0.56 0.52 2.50 1.08 5.73 1.44 2.29 1.00 1.75 1.93 2.12 2.71 3.46 2.63 2.45 3.72 1.39 1.32 2.87 11 465418 Transcript 0 2.31 0.97 0.58 1.61 2.11 0.32 4.18 1.20 3.82 0.81 0.92 1.92 1.75 1.35 1.42 0.94 2.70 1.03 0.47 3.69 1.04 0.33 2.77 12 484607 Transcript 1 4.02 9.86 7.95 13.66 16.64 19.11 28.38 12.52 25.99 17.12 15.31 39.16 41.89 11.61 7.01 6.37 11.31 5.68 5.14 9.79 5.54 14.72 6.53 13 ER1a ExonRegion 0 7.35 15.61 3.21 6.58 5.79 59.73 22.21 4.55 7.54 8.76 27.69 0.28 2.44 25.06 23.85 27.50 23.19 25.91 20.72 10.97 21.09 11.03 16.57 14 E1_Ab KnownBoundary 0 10.59 30.46 11.41 9.39 11.46 95.17 46.72 6.37 11.52 27.24 38.48 5.70 6.82 19.90 21.39 33.15 37.03 68.85 17.79 18.92 24.65 20.45 3.84 15 ER1b ExonRegion 1 11.01 11.41 9.62 8.68 10.86 21.16 14.24 5.01 14.06 21.60 55.40 4.33 6.92 46.82 48.49 27.51 46.39 19.26 22.03 21.00 46.22 26.52 20.76 16 E1_Ac KnownBoundary 1 17.78 29.14 20.55 20.11 24.45 41.06 10.60 12.73 33.80 29.87 67.54 0.00 13.64 63.39 53.90 73.31 82.84 55.09 31.91 41.55 54.43 34.35 36.11 17 E1_Ad KnownBoundary 1 33.56 43.08 43.97 41.65 39.64 56.05 22.35 47.44 67.33 46.52 95.81 6.30 13.47 46.62 89.13 98.69 66.20 104.88 98.07 38.86 72.65 53.15 31.67 18 ER1c ExonRegion 1 26.81 32.27 30.31 21.72 39.24 48.90 21.10 15.79 41.83 41.44 92.65 3.75 32.20 78.07 110.44 100.46 91.76 43.36 72.63 44.82 86.97 57.23 39.55 19 ER1d ExonRegion 1 35.63 60.82 63.04 67.92 52.63 162.25 64.05 73.86 106.05 131.23 215.79 23.83 25.43 177.74 151.77 131.10 149.75 168.30 114.79 100.88 109.28 129.20 93.78 20 E1a_E5a KnownJunction 1 37.64 107.02 68.00 81.41 100.00 362.29 128.96 76.07 137.99 171.84 294.39 29.86 74.51 166.34 75.78 127.92 168.86 113.83 112.76 89.68 89.95 111.08 84.68 21 E1a_E5b KnownJunction 0 3.78 3.16 13.99 18.91 12.39 11.36 33.83 12.20 19.50 16.44 45.75 0.00 6.98 31.49 45.00 7.95 25.25 39.59 30.12 11.76 23.35 31.66 29.54 22 E1a_E6a KnownJunction 0 3.33 0.00 9.34 7.03 3.31 10.73 6.23 19.72 27.60 14.69 0.00 7.65 0.00 12.42 0.00 8.20 14.21 13.35 0.00 5.37 5.31 3.12 3.16 23 ER2a ExonRegion 0 4.74 0.19 0.00 0.00 2.68 0.09 0.00 0.00 1.41 0.00 2.30 0.00 0.00 0.00 2.90 6.37 3.14 0.00 6.07 0.00 0.21 1.98 4.20 24 ER2b ExonRegion 1 64.98 9.71 7.07 12.38 13.99 33.44 7.19 16.86 70.20 16.55 40.77 0.03 3.09 54.46 46.23 120.13 52.39 20.44 41.57 3.09 29.77 34.39 54.48 25 E2a_E5a KnownJunction 1 13.71 2.89 5.06 4.13 3.06 2.16 0.00 13.80 39.87 11.28 9.16 5.25 52.76 14.83 9.02 11.45 13.18 8.95 8.28 0.00 20.32 7.78 0.00 26 E2a_E5b KnownJunction 0 3.78 3.35 1.21 1.56 0.00 2.50 0.00 0.00 2.49 0.00 9.90 0.00 0.00 4.71 8.90 7.35 11.87 4.31 0.00 0.00 5.00 2.45 0.00 27 ER3a ExonRegion 0 2.66 2.84 6.39 0.87 1.12 1.03 5.00 2.16 9.66 2.88 4.58 1.99 3.51 3.86 4.24 5.41 6.93 5.27 4.90 7.44 2.77 2.63 5.74 28 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER4a ExonRegion 0 4.62 1.93 1.16 3.21 4.21 0.63 8.35 2.40 6.19 1.61 1.85 3.85 3.50 2.71 2.85 1.87 5.40 2.05 0.94 7.38 2.08 0.67 5.55 30 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5a ExonRegion 0 97.58 136.24 154.00 170.13 130.94 171.11 129.63 163.07 307.65 239.92 488.20 202.98 236.06 382.60 273.15 383.68 322.78 228.53 246.90 178.93 196.29 217.97 206.22 32 E5_Ab KnownBoundary 0 142.99 135.24 205.26 210.53 199.49 184.72 167.69 204.96 410.50 274.82 529.56 218.77 358.09 461.83 438.22 491.07 431.88 273.59 315.30 178.58 215.91 285.47 297.15 33 ER5b ExonRegion 0 124.94 123.99 222.80 251.88 161.45 221.10 148.73 214.59 436.00 305.90 596.36 351.84 330.36 468.59 390.66 433.02 424.23 367.31 368.88 241.40 270.61 297.48 232.47 34 E5_Da KnownBoundary 0 170.40 132.28 271.93 321.20 184.89 196.14 139.64 255.36 438.22 289.36 548.72 592.24 395.92 562.19 516.84 540.03 433.66 389.54 417.89 279.13 266.14 373.40 186.43 35 ER5c ExonRegion 0 174.04 142.12 235.22 260.31 150.39 219.76 121.17 248.70 484.22 282.58 539.45 514.62 436.39 620.97 443.23 535.93 491.01 423.93 415.91 242.84 330.41 382.89 242.27 36 E5b_E6a KnownJunction 0 239.08 182.27 244.14 250.05 143.72 255.82 119.77 256.67 539.03 296.56 513.60 471.00 449.97 583.56 485.94 491.58 544.18 427.18 415.82 204.60 366.34 349.34 279.73 37 E5b_E7a NovelJunction 0 0.00 15.26 4.61 20.84 0.00 5.79 3.89 2.05 1.30 8.38 2.16 0.00 0.00 0.00 0.00 0.00 0.00 8.46 13.08 5.82 0.00 0.00 3.24 38 E6_Aa NovelBoundary 0 3.56 3.35 7.86 18.18 6.28 5.56 18.42 8.34 26.27 8.17 13.42 24.01 25.81 7.89 0.00 8.20 21.60 13.35 16.09 30.04 3.15 11.02 7.51 39 ER6a ExonRegion 0 260.99 168.67 277.62 256.74 216.92 332.87 227.74 274.15 523.53 317.56 740.92 521.48 440.97 611.25 511.95 523.91 566.31 450.40 414.32 257.54 391.35 370.08 317.76 40 E6_Da KnownBoundary 0 453.64 267.19 290.53 335.46 291.85 360.30 329.76 324.53 626.85 373.41 788.88 660.52 408.41 621.05 648.87 528.58 628.70 514.60 522.65 338.82 368.01 407.82 319.09 41 ER6b ExonRegion 0 344.94 293.62 285.49 285.57 291.63 339.61 287.26 299.77 594.41 337.07 764.67 566.77 421.41 656.29 580.61 585.63 549.90 554.66 511.41 291.94 420.84 422.24 294.10 42 E6_Db NovelBoundary 0 260.94 286.66 264.51 211.59 296.35 315.50 321.90 210.50 465.76 236.28 541.98 442.04 430.33 423.86 475.31 403.40 439.36 409.56 310.31 202.04 272.31 268.75 228.43 43 E6c_E7a KnownJunction 0 370.29 353.36 310.22 255.21 379.46 394.20 340.89 293.10 580.49 291.99 722.18 678.67 445.26 677.97 661.11 511.49 533.61 429.04 506.37 258.99 434.79 374.99 291.60 44 ER6c ExonRegion 0 285.95 323.23 295.06 256.08 348.97 368.01 308.69 274.82 551.38 304.35 750.68 616.15 488.01 635.54 610.03 520.59 534.05 457.17 442.43 252.74 408.50 356.72 296.91 45 ER7a ExonRegion 0 354.73 317.21 326.66 344.97 284.57 325.01 262.76 326.28 602.06 356.95 707.20 541.12 471.88 610.87 601.93 623.41 512.38 424.97 463.52 268.20 379.95 452.49 294.91 46 E7_Da NovelBoundary 0 3.78 2.57 0.00 5.29 3.48 15.90 32.37 17.95 20.02 8.46 30.53 24.16 6.82 20.90 4.45 4.36 21.22 9.95 20.42 14.32 14.02 8.21 15.45 47 E7a_E8b KnownJunction 0 436.08 394.47 415.69 488.08 473.26 508.46 370.70 343.34 676.99 423.96 630.69 685.42 779.01 568.55 613.02 697.42 586.07 318.32 385.05 263.91 291.16 416.57 329.25 48 I7 Intron 0 5.19 6.41 4.25 15.37 7.79 14.31 23.74 11.40 21.22 8.96 16.43 34.75 37.39 15.65 7.41 9.10 12.30 7.50 6.68 12.88 7.44 12.62 4.45 49 I7_SR1 SilentIntronRegion 0 5.21 6.44 4.27 15.44 7.82 14.37 23.85 11.45 21.31 8.99 16.51 34.90 37.56 15.72 7.45 9.14 12.36 7.53 6.71 12.94 7.47 12.67 4.47 50 E8_Aa NovelBoundary 1 7.26 0.00 6.86 13.72 4.33 7.61 31.09 14.17 29.98 4.59 12.32 76.98 27.27 6.89 0.00 8.63 4.02 7.71 3.86 8.88 2.59 8.27 3.93 51 ER8a ExonRegion 1 4.02 9.86 7.95 13.66 16.64 19.11 28.38 12.52 25.99 17.12 15.31 39.16 41.89 11.61 7.01 6.37 11.31 5.68 5.14 9.79 5.54 14.72 6.53 52 E8_Ab KnownBoundary 0 0.00 5.33 9.85 15.98 23.17 20.90 19.61 11.83 31.77 18.86 2.05 37.51 6.66 9.12 0.00 4.36 8.32 5.89 4.71 2.36 2.53 5.76 4.35 53 ER8b ExonRegion 0 635.36 365.97 431.17 470.82 544.92 512.23 407.96 416.83 760.67 457.24 867.69 806.06 748.71 703.73 725.94 643.09 580.92 358.69 593.25 252.19 340.35 536.54 351.72 54 E8_Da KnownBoundary 0 6.52 18.22 3.49 11.49 20.97 12.83 10.47 12.32 50.32 10.42 27.90 56.57 61.68 12.30 0.00 7.78 8.42 7.25 0.00 18.02 12.42 27.92 16.05 55 E8a_E8c KnownJunction 0 736.13 405.98 548.00 604.29 642.61 534.24 489.94 547.31 778.87 518.81 738.40 750.09 539.25 896.47 775.08 753.99 530.90 386.01 687.83 246.21 309.63 561.39 414.01 56 E8a_E8d NovelJunction 0 11.19 5.33 16.35 0.00 12.99 0.00 2.03 0.00 19.68 1.34 0.00 0.00 6.82 0.00 0.00 4.36 0.00 0.00 0.00 8.31 0.00 0.00 0.00 57 ER8c ExonRegion 0 27.01 31.68 18.20 38.45 39.85 20.89 25.43 24.20 68.92 17.72 37.76 63.63 59.68 24.37 12.07 28.17 24.14 16.59 10.55 24.93 15.10 33.46 17.00 58 E8_Ac KnownBoundary 0 47.27 43.02 20.93 58.63 99.58 61.90 39.00 42.43 90.97 19.56 49.59 42.91 84.57 28.08 17.80 21.45 18.70 13.27 17.98 23.39 5.81 47.33 7.60 59 ER8d ExonRegion 0 696.41 490.17 551.01 624.55 696.59 577.65 542.53 546.51 842.30 540.40 914.19 757.98 783.93 907.88 876.39 1011.51 675.71 443.12 856.63 306.07 342.80 749.37 431.36 60 ER8e ExonRegion 0 621.94 527.53 541.29 578.83 592.56 586.82 522.15 527.71 826.67 513.04 823.98 817.00 968.97 698.94 722.41 756.32 722.65 407.32 594.40 371.65 378.33 596.19 352.92 61 E8_Dc KnownBoundary 0 43.04 29.73 24.04 27.67 68.17 18.85 23.67 28.79 71.76 20.63 19.11 12.15 44.80 24.13 0.00 21.87 17.58 3.98 15.91 26.33 5.19 37.29 7.85 62 E8c_E8d KnownJunction 0 558.17 454.85 407.47 443.40 405.26 549.12 440.39 419.49 622.97 391.97 714.92 820.02 785.34 497.15 629.71 442.53 484.52 285.49 444.15 305.59 340.64 383.87 236.97 63 ER8f ExonRegion 1 115.75 72.88 39.22 86.87 83.82 30.44 30.27 41.00 102.13 28.47 31.02 60.23 67.69 22.50 18.10 31.83 20.58 10.66 10.54 24.60 8.87 47.90 14.43 64 E8_Ad KnownBoundary 0 302.20 188.06 90.24 152.63 112.90 42.08 66.38 86.83 176.97 45.21 59.44 92.58 33.28 15.07 31.89 61.69 23.38 22.80 22.31 22.37 73.21 49.91 24.67 65 ER8g ExonRegion 0 915.41 672.22 534.44 616.71 469.78 420.97 325.66 552.85 864.19 478.30 775.19 857.09 1029.06 754.74 869.02 738.22 669.50 377.17 621.80 356.59 431.36 580.32 399.67 66 E8d_E9a KnownJunction 0 813.48 753.02 465.54 493.64 583.02 341.85 352.64 445.08 642.33 387.32 704.55 516.47 910.49 680.33 865.45 427.32 683.03 168.30 377.99 329.68 373.75 302.00 252.59 67 E8d_E10a NovelJunction 0 3.33 12.89 18.69 9.92 0.00 17.04 6.14 4.56 10.59 11.90 4.16 0.00 0.00 2.47 4.45 15.64 4.77 4.39 0.00 6.52 7.35 5.02 8.71 68 I8_SR1 SilentIntronRegion 0 22.48 14.05 14.22 20.54 26.86 8.82 9.74 20.40 28.00 12.95 4.02 10.94 23.50 4.36 7.48 6.77 3.04 2.84 2.06 6.77 1.66 8.44 3.40 69 ER9a ExonRegion 0 775.65 766.02 504.21 550.28 577.40 429.21 381.44 481.97 717.41 436.25 771.33 592.45 928.13 697.94 796.85 569.08 682.16 293.79 497.17 331.69 375.50 371.85 281.61 70 E9a_E10a KnownJunction 0 1084.41 920.95 437.03 503.30 728.69 594.09 560.91 406.72 590.94 341.01 767.62 786.71 1027.37 703.99 904.76 711.10 670.59 286.48 732.16 366.12 349.78 460.60 346.06 71 I9 Intron 0 22.99 12.96 9.91 15.83 22.76 11.91 11.41 14.90 16.09 12.11 2.06 6.92 11.53 4.64 3.51 2.81 2.34 1.41 3.38 8.79 0.78 7.87 3.81 72 I9_AR1 ActiveIntronRegion 0 17.64 14.02 11.01 18.38 23.06 10.27 11.97 17.39 17.71 14.49 1.95 6.87 14.03 4.87 2.75 2.56 2.37 1.72 2.29 9.78 0.63 8.68 3.38 73 I9_SR1 SilentIntronRegion 0 48.93 8.30 4.97 4.18 21.91 19.95 9.00 3.50 8.79 1.18 2.63 7.27 0.00 3.64 7.20 4.04 2.24 0.00 8.66 4.34 1.50 4.25 5.99 74 E10_Aa NovelBoundary 0 86.68 29.86 56.36 33.40 39.39 51.16 29.50 43.05 40.60 23.13 2.47 0.00 19.48 5.12 15.95 3.59 3.74 13.18 9.04 6.46 10.63 10.84 12.55 75 ER10a ExonRegion 0 843.23 509.42 523.62 550.04 481.21 444.04 312.73 465.53 716.64 406.19 633.22 527.39 697.61 639.80 903.30 635.47 533.88 417.62 503.69 295.29 343.21 422.59 373.89 76 E10_Da KnownBoundary 0 402.89 239.23 310.57 303.72 374.62 280.24 180.27 446.39 468.95 338.41 420.79 274.74 351.28 480.55 701.65 443.05 312.95 218.13 315.68 191.37 196.39 309.35 299.37 77 ER10b ExonRegion 0 219.12 123.28 232.06 208.62 170.44 135.04 73.47 250.70 305.39 202.43 315.24 165.32 148.37 276.58 347.65 216.59 204.58 116.71 183.48 111.31 124.31 213.93 123.01 78 ER10c ExonRegion 0 2.12 2.03 2.45 2.04 1.34 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 79 IG25 Intergenic 0 24.71 160.52 113.55 217.59 186.28 262.48 53.75 167.63 176.42 217.21 0.61 0.38 0.35 0.82 0.96 2.08 1.74 59.29 51.15 135.64 0.47 1.47 1.68 80 IG25_AR1 ActiveIntergenicRegion 0 16.53 80.48 43.31 74.49 95.68 65.81 12.71 49.35 38.28 46.12 0.00 0.00 0.00 3.37 0.84 2.45 1.75 12.01 11.28 20.44 0.45 2.38 2.08 81 IG25_AR2 ActiveIntergenicRegion 0 26.81 151.84 116.00 189.38 244.94 164.35 40.77 115.73 109.26 124.77 0.00 0.00 0.00 2.37 0.00 4.46 5.64 8.78 3.19 51.68 0.00 3.39 6.97 82 IG25_SR1 SilentIntergenicRegion 0 7.06 119.30 105.65 174.75 197.31 149.90 32.90 135.27 111.48 125.69 0.00 0.00 0.00 1.99 0.00 0.00 1.22 4.24 2.12 40.03 0.00 1.54 0.11 83 IG25_SR2 SilentIntergenicRegion 0 29.44 223.68 125.96 252.94 249.75 203.78 46.57 205.95 156.01 180.31 0.00 0.66 1.76 0.86 3.24 0.00 0.98 5.98 10.87 59.72 0.67 1.26 0.45 84 IG25_AR3 ActiveIntergenicRegion 0 76.51 464.09 286.60 556.58 416.98 429.12 105.11 377.81 322.70 369.17 0.31 0.29 0.22 0.98 1.35 5.08 3.23 50.74 64.33 159.54 0.36 2.74 2.51 85 IG25_SR3 SilentIntergenicRegion 0 23.91 171.31 117.10 212.43 225.50 414.99 41.97 165.25 173.19 183.35 0.28 0.90 0.69 0.74 1.04 2.38 3.35 42.23 43.30 97.82 0.29 1.51 2.19 86 IG25_AR4 ActiveIntergenicRegion 0 22.92 106.13 104.47 204.81 205.93 348.02 52.88 205.18 221.48 240.73 1.29 1.64 0.73 2.70 3.40 5.43 4.00 63.17 48.83 120.01 2.45 2.88 3.31 87 IG25_SR4 SilentIntergenicRegion 0 17.18 107.20 68.59 128.90 151.58 177.09 53.20 108.98 123.96 139.49 0.00 0.50 0.00 1.12 1.15 1.38 2.69 39.24 43.90 96.09 0.65 1.49 1.36 88 IG25_AR5 ActiveIntergenicRegion 0 18.19 137.80 110.25 211.53 158.32 219.63 61.24 151.70 177.46 247.24 0.95 0.00 0.19 0.35 0.12 1.39 0.41 73.59 64.52 169.77 0.05 1.01 1.12 89 IG25_SR5 SilentIntergenicRegion 0 21.69 73.72 38.45 115.85 161.21 287.68 43.19 134.82 162.88 229.09 0.00 0.00 0.00 1.22 2.90 0.00 0.00 96.31 44.60 175.00 0.00 2.08 5.87 90 IG25_AR6 ActiveIntergenicRegion 0 11.88 59.86 52.76 106.54 69.18 159.43 31.83 99.61 130.36 178.12 0.97 0.00 0.00 0.00 0.37 0.65 0.67 88.59 53.23 161.26 0.04 0.86 1.82 91 IG25_SR6 SilentIntergenicRegion 0 13.75 74.77 52.28 105.56 75.51 160.80 37.42 105.25 137.95 184.62 0.51 0.00 0.00 0.00 0.27 0.47 0.29 91.27 55.26 182.39 0.74 0.55 0.77