Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CENPM Gene 0 17.47 34.70 96.47 46.78 24.45 17.89 40.95 63.63 21.50 56.49 194.76 18.17 10.81 219.92 369.72 189.41 268.94 190.48 106.33 149.40 3.95 8.70 9.20 2 215980 Transcript 0 7.39 8.86 6.19 8.04 3.09 1.05 4.38 8.11 0.67 4.04 5.08 2.24 0.29 4.27 14.82 21.01 9.23 21.85 10.92 17.75 0.00 0.94 2.73 3 396437 Transcript 0 1.21 2.92 19.87 8.02 6.22 1.05 6.89 14.33 4.47 8.14 7.86 4.18 3.00 13.03 25.49 31.02 24.44 30.85 5.65 30.79 1.02 0.00 0.00 4 442367 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 407253 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 460824 Transcript 0 0.00 0.73 3.99 0.95 0.47 0.00 3.01 0.00 0.86 1.82 2.77 0.00 0.00 4.43 15.36 14.92 5.39 7.29 5.49 9.10 0.00 0.00 0.00 7 402420 Transcript 1 11.56 22.26 20.04 9.28 25.53 28.40 40.65 22.84 13.32 22.29 30.87 6.32 2.41 7.51 38.58 61.21 40.32 130.34 73.01 40.14 1.37 0.00 6.51 8 402338 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 404067 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 396434 Transcript 1 8.85 15.07 2.73 1.92 19.58 1.75 18.05 2.67 2.02 3.23 6.50 0.00 0.00 16.32 59.74 48.36 7.95 17.47 17.66 20.02 0.00 1.70 0.00 11 472374 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 IG30_SR2 SilentIntergenicRegion 0 0.00 1.85 5.17 5.40 8.94 11.13 7.23 8.28 2.12 4.98 3.66 0.00 0.00 2.38 2.99 0.90 3.99 3.75 16.93 9.90 0.00 0.00 1.78 13 ER1a ExonRegion 1 3.53 7.94 2.80 2.79 2.17 2.10 7.44 4.12 0.18 1.20 6.17 1.24 0.00 3.56 16.58 38.50 6.29 5.02 14.87 14.49 0.00 1.89 5.45 14 ER1b ExonRegion 1 21.43 38.38 19.30 11.07 12.04 11.69 44.85 10.80 5.09 9.61 57.02 4.33 0.00 71.26 166.46 269.72 49.51 15.71 135.78 69.95 0.00 8.33 20.19 15 ER1c ExonRegion 1 30.34 54.91 37.17 17.72 21.41 16.50 65.32 12.10 8.65 14.91 76.03 4.33 0.00 179.74 349.12 372.51 80.32 24.02 195.37 98.58 0.00 8.33 26.43 16 ER1d ExonRegion 0 21.20 41.88 83.65 38.68 17.50 23.17 49.62 47.83 15.66 54.31 161.53 7.62 8.47 243.20 566.69 275.59 478.83 35.34 173.17 164.00 1.99 14.11 16.24 17 E1a_E2d KnownJunction 1 13.41 2.76 28.24 13.78 0.00 2.78 23.76 22.22 2.72 25.65 73.70 19.81 0.00 43.09 112.99 17.86 94.16 49.62 4.24 32.28 0.00 2.63 4.27 18 ER2a ExonRegion 0 11.56 22.26 20.04 9.28 25.53 28.40 40.65 22.84 13.32 22.29 30.87 6.32 2.41 7.51 38.58 61.21 40.32 130.34 73.01 40.14 1.37 0.00 6.51 19 E2_Ab KnownBoundary 0 28.82 41.77 3.67 7.59 33.11 38.78 61.21 13.80 3.07 3.04 36.64 0.00 0.00 7.48 34.86 37.77 51.71 38.30 83.58 49.79 0.00 0.00 8.28 20 E2_Ac KnownBoundary 0 0.00 3.35 34.92 14.75 8.23 26.92 16.87 24.93 14.84 33.98 7.74 0.00 0.00 2.71 0.00 24.78 26.27 138.66 31.34 30.94 0.00 0.00 4.10 21 ER2b ExonRegion 0 16.93 30.50 29.41 13.63 42.81 47.68 60.37 32.84 19.76 29.59 40.59 8.66 4.69 11.37 49.90 92.14 69.32 179.23 108.30 65.96 2.20 0.00 8.81 22 ER2c ExonRegion 0 3.00 5.04 39.75 18.08 7.99 15.09 9.78 34.24 15.43 28.06 22.75 1.60 1.71 18.94 44.03 42.26 58.28 112.89 56.97 55.88 1.23 1.12 3.21 23 E2_Ad KnownBoundary 0 0.00 9.01 58.31 36.99 8.15 2.73 6.23 64.24 19.94 33.55 22.85 0.00 6.49 38.26 84.18 75.54 60.50 255.35 62.03 128.98 3.09 0.00 0.00 24 ER2d ExonRegion 0 13.37 19.77 139.40 53.20 24.86 9.94 22.41 85.13 28.28 98.69 437.40 25.10 12.11 178.20 287.26 213.20 422.31 331.33 122.46 204.90 6.19 10.21 8.77 25 E2_Da KnownBoundary 0 0.00 8.68 12.06 1.47 4.24 0.00 0.00 0.00 0.00 2.77 7.58 0.00 0.00 2.18 13.35 11.02 8.98 14.96 8.85 15.02 0.00 0.00 0.00 26 E2a_E3a KnownJunction 0 12.67 38.41 274.83 110.41 46.43 28.05 43.94 167.54 50.46 165.39 699.02 41.41 20.45 419.92 580.38 412.63 689.39 582.38 234.27 419.62 8.40 26.94 15.88 27 ER2e ExonRegion 0 0.00 0.73 3.99 0.95 0.47 0.00 3.01 0.00 0.86 1.82 2.77 0.00 0.00 4.43 15.36 14.92 5.39 7.29 5.49 9.10 0.00 0.00 0.00 28 E3_Aa NovelBoundary 0 7.04 11.18 6.36 4.86 7.98 0.00 10.86 20.66 3.44 6.23 7.37 0.00 6.82 30.31 14.09 51.78 29.55 44.44 16.57 22.82 5.87 0.00 0.00 29 ER3a ExonRegion 0 15.11 56.11 242.70 135.22 42.81 67.20 86.24 156.51 55.39 148.01 590.14 49.67 17.60 729.68 1305.69 923.31 1021.72 632.88 580.32 426.10 8.60 31.16 57.06 30 E3a_E4a KnownJunction 0 0.00 0.00 0.00 4.13 0.00 0.00 0.00 7.23 1.48 2.79 4.69 0.00 0.00 12.07 5.07 4.10 4.77 3.61 7.15 3.00 0.00 0.00 0.00 31 E3a_E4b KnownJunction 0 16.97 114.26 254.13 123.26 70.29 38.73 83.51 167.79 47.95 140.14 412.68 43.96 46.91 386.96 706.72 326.41 324.17 601.65 222.12 343.43 11.12 0.00 27.06 32 ER4a ExonRegion 0 1.45 4.40 2.85 3.03 1.06 0.47 4.26 5.31 3.07 3.81 9.69 3.52 0.55 14.60 20.75 7.53 7.79 13.90 16.22 9.05 0.18 0.02 0.38 33 E4_Ab KnownBoundary 0 0.00 12.89 1.21 3.13 3.57 0.00 8.57 1.93 2.89 5.00 4.63 6.30 0.00 4.94 13.35 8.72 4.30 11.52 4.80 3.00 0.00 0.00 0.00 34 ER4b ExonRegion 0 19.72 66.00 195.89 99.63 90.64 56.31 168.70 126.00 51.87 141.17 415.26 64.67 37.70 394.27 593.88 277.87 449.47 488.39 135.28 318.18 8.62 7.94 17.88 35 E4_Da KnownBoundary 0 3.04 14.93 33.17 13.09 11.46 0.00 32.02 24.23 8.51 16.04 17.90 23.41 6.82 18.95 22.37 66.65 45.44 71.05 13.55 42.44 2.53 0.00 0.00 36 E4a_E5a KnownJunction 0 31.12 70.18 186.78 98.09 105.60 67.97 238.66 126.59 44.30 119.91 312.82 38.86 19.80 371.01 499.04 205.33 415.43 358.61 89.79 259.31 0.00 8.63 19.12 37 E4a_E7a KnownJunction 0 0.00 0.00 12.27 0.00 4.33 2.16 10.02 8.83 0.00 0.00 4.53 0.00 0.00 19.54 39.19 13.07 4.77 2.24 0.00 0.00 0.00 0.00 0.00 38 ER4c ExonRegion 0 1.21 2.92 19.87 8.02 6.22 1.05 6.89 14.33 4.47 8.14 7.86 4.18 3.00 13.03 25.49 31.02 24.44 30.85 5.65 30.79 1.02 0.00 0.00 39 E4_Db NovelBoundary 0 3.19 8.42 61.29 19.61 0.00 0.00 8.70 34.75 8.39 43.30 18.22 0.00 6.82 4.94 45.74 63.32 51.89 61.97 46.40 54.27 3.03 0.00 0.00 40 E5_Aa NovelBoundary 0 3.56 17.43 15.08 19.05 0.00 0.00 12.67 29.04 1.27 25.04 5.37 6.00 13.64 9.42 9.64 38.45 44.23 78.55 34.07 28.38 0.00 2.94 4.10 41 ER5a ExonRegion 0 49.09 100.77 219.54 108.33 46.53 40.26 113.79 129.71 40.79 97.05 414.61 44.42 22.12 492.51 683.88 302.64 456.96 351.13 152.90 307.82 7.81 17.35 13.79 42 E5_Da NovelBoundary 0 6.96 18.88 38.38 23.71 16.98 0.00 34.89 51.63 13.48 44.11 7.58 0.00 0.00 19.19 43.64 61.01 38.90 182.10 29.93 109.87 0.00 3.12 15.62 43 E5a_E7a KnownJunction 0 91.35 50.25 177.02 58.00 39.13 5.51 32.50 76.64 13.25 56.14 394.89 12.15 6.82 460.71 563.32 283.43 388.69 208.80 77.27 221.60 17.48 5.08 3.84 44 I5 Intron 0 4.51 40.10 45.20 40.94 14.66 2.54 22.61 70.30 18.92 44.16 15.30 10.22 7.11 19.83 61.13 75.69 45.21 180.13 59.57 120.32 1.19 2.47 4.77 45 I5_SR1 SilentIntronRegion 0 4.52 40.17 45.29 41.02 14.69 2.55 22.66 70.44 18.96 44.25 15.33 10.24 7.12 19.86 61.25 75.84 45.30 180.49 59.69 120.55 1.19 2.47 4.78 46 E6_Aa NovelBoundary 0 6.82 40.12 34.27 36.06 18.42 2.16 20.93 47.15 16.15 16.55 9.58 0.00 7.95 26.31 62.18 38.71 38.90 114.74 51.01 73.19 2.47 0.00 4.18 47 E6_Ab NovelBoundary 1 17.71 60.45 37.08 17.05 61.21 2.84 42.97 49.74 12.47 27.35 15.95 0.00 0.00 48.15 169.60 144.15 28.70 98.82 67.48 61.74 0.00 6.00 0.00 48 ER6a ExonRegion 1 8.85 15.07 2.73 1.92 19.58 1.75 18.05 2.67 2.02 3.23 6.50 0.00 0.00 16.32 59.74 48.36 7.95 17.47 17.66 20.02 0.00 1.70 0.00 49 ER6b ExonRegion 1 9.47 17.23 3.72 4.09 25.08 0.93 12.72 3.31 2.37 5.73 9.34 0.00 0.00 30.67 89.20 92.19 25.57 19.98 18.36 22.14 0.00 1.24 2.54 50 E6_Da NovelBoundary 0 0.00 61.17 36.19 34.33 22.16 0.00 22.92 74.30 15.42 24.07 4.63 0.00 0.00 19.19 46.36 95.19 35.62 143.47 59.20 80.15 0.00 0.00 3.93 51 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 I6 Intron 0 7.29 42.52 27.47 26.92 11.94 0.00 7.77 39.72 7.96 21.14 11.58 3.83 3.97 15.33 51.40 54.19 33.25 80.90 30.87 63.75 0.56 0.80 2.62 53 I6_SR1 SilentIntronRegion 0 7.32 42.73 27.60 27.05 12.00 0.00 7.80 39.92 8.00 21.24 11.64 3.85 3.99 15.40 51.65 54.46 33.41 81.30 31.02 64.05 0.56 0.80 2.63 54 E7_Aa NovelBoundary 0 6.96 18.88 41.45 46.51 7.89 10.33 19.08 62.19 14.15 32.45 11.95 0.00 6.66 45.68 86.04 60.75 42.64 172.11 54.97 109.11 0.00 0.00 4.18 55 ER7a ExonRegion 0 61.46 49.13 173.61 64.55 30.50 11.15 33.36 91.26 17.84 56.47 358.20 30.31 11.44 472.29 594.64 296.50 423.84 271.10 66.77 256.77 14.02 14.33 9.28 56 ER7b ExonRegion 0 28.45 51.67 133.10 63.27 29.14 12.56 40.46 91.29 27.42 73.13 256.85 22.62 17.07 323.52 523.46 187.34 311.33 228.19 86.20 186.91 6.04 12.65 5.27 57 E7_Db KnownBoundary 1 48.08 80.84 77.44 90.50 58.49 16.69 57.06 108.93 22.74 59.36 107.08 19.66 19.97 150.04 203.35 74.17 119.21 194.04 59.30 132.63 0.00 0.00 0.00 58 ER7c ExonRegion 0 25.40 45.61 43.59 31.54 27.90 5.50 21.75 37.53 11.82 23.43 57.71 12.99 12.06 94.43 137.19 35.67 75.92 92.65 31.85 76.90 0.00 0.00 0.00 59 ER7d ExonRegion 0 19.58 33.05 27.37 27.14 16.28 1.22 10.48 31.69 6.79 20.36 36.89 7.58 8.21 41.42 77.37 23.53 47.31 70.21 18.85 58.51 0.00 0.00 0.00 60 ER7e ExonRegion 0 11.24 9.79 9.57 13.29 4.01 0.00 1.32 12.10 1.16 6.88 3.99 3.25 0.59 4.97 13.06 3.53 12.17 38.69 6.97 21.01 0.00 0.00 0.00 61 IG29 Intergenic 0 5.35 24.24 52.77 31.05 17.67 6.00 15.71 61.03 22.25 50.00 11.01 2.96 2.61 10.01 20.25 19.85 20.64 160.52 42.89 65.30 0.97 1.77 3.06 62 IG29_SR4 SilentIntergenicRegion 0 1.93 7.37 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 1.76 3.94 3.52 6.09 22.17 0.00 0.00 0.00 5.75 7.67 1.97 0.00 0.00 63 IG29_SR3 SilentIntergenicRegion 0 1.81 21.79 28.17 26.11 17.20 3.93 10.21 35.31 11.04 24.17 5.80 1.53 0.00 8.56 28.23 15.29 16.98 94.48 36.86 64.74 0.00 0.89 5.03 64 IG29_AR2 ActiveIntergenicRegion 0 9.84 70.03 79.07 68.17 42.38 8.79 25.20 84.96 30.48 61.34 12.36 7.59 9.78 15.71 31.59 63.48 21.10 190.47 92.10 61.84 0.00 3.03 6.40 65 IG29_SR2 SilentIntergenicRegion 0 4.79 20.56 51.45 25.51 15.09 5.21 14.88 60.47 22.31 51.83 10.79 2.15 2.13 11.30 23.61 20.98 26.84 172.40 43.13 81.70 1.14 1.92 2.76 66 IG29_AR1 ActiveIntergenicRegion 0 9.21 39.99 73.84 45.61 25.65 9.93 26.45 78.43 30.07 65.32 17.24 3.90 3.07 14.82 27.72 28.63 27.69 213.68 49.35 83.11 1.57 2.77 3.39 67 IG29_SR1 SilentIntergenicRegion 0 3.76 14.88 43.03 25.91 13.66 4.85 10.78 52.77 18.42 41.69 8.63 2.79 2.01 5.73 11.10 9.03 11.26 125.58 33.78 41.17 0.68 1.03 2.73