Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NHP2L1 Gene 0 166.87 407.72 326.39 291.60 141.84 256.79 73.33 189.99 167.84 251.51 348.84 131.56 78.63 265.62 388.85 266.19 235.94 256.21 292.80 228.68 190.36 196.70 155.13 2 402458 Transcript 0 0.80 0.77 0.02 0.00 0.97 0.00 0.48 0.00 0.00 0.02 0.06 1.30 4.49 2.47 4.06 1.15 1.23 0.01 3.55 6.99 0.02 1.53 1.03 3 355257 Transcript 1 676.35 436.95 156.60 111.84 173.05 246.89 155.73 63.34 58.25 91.22 492.16 8.56 9.65 368.15 960.74 569.25 362.92 214.20 244.83 198.07 213.02 161.93 310.31 4 401959 Transcript 0 44.38 13.62 6.09 9.59 0.00 10.56 4.02 2.55 0.00 4.06 16.53 0.00 0.00 29.67 77.63 35.46 12.62 15.55 19.67 24.93 5.75 2.82 11.61 5 469522 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 469028 Transcript 0 0.05 0.00 0.28 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 7 463675 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 215956 Transcript 0 2.65 3.56 2.08 4.66 2.68 0.20 0.29 2.98 0.48 0.80 0.43 0.00 4.30 1.49 10.88 0.91 0.46 0.51 0.88 5.56 0.67 0.06 4.24 9 488571 Transcript 0 1.51 0.84 4.68 2.48 1.23 1.93 1.42 1.84 1.22 1.65 1.48 3.95 7.37 0.89 2.51 1.82 1.00 0.11 0.97 2.39 0.11 1.38 0.45 10 431647 Transcript 0 3.70 0.51 0.20 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.48 0.00 0.00 0.27 0.24 0.50 1.38 0.77 1.59 0.00 0.73 0.00 0.98 11 454801 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 1.60 1.54 0.04 0.00 1.95 0.00 0.96 0.00 0.00 0.03 0.11 2.60 8.98 4.94 8.12 2.29 2.45 0.03 7.10 13.98 0.03 3.07 2.06 13 E1a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2a ExonRegion 0 14.60 6.03 4.39 7.52 7.47 8.60 3.01 0.36 2.60 1.94 11.46 0.00 0.00 8.46 29.41 19.58 14.57 2.04 3.19 2.57 11.93 7.26 20.86 15 ER2b ExonRegion 1 177.54 107.78 48.65 39.56 71.77 117.63 74.18 14.44 19.83 37.34 212.56 2.04 2.62 243.81 298.66 231.83 167.76 57.93 50.59 68.65 110.70 95.60 131.37 16 E2_Ac KnownBoundary 1 537.80 302.97 103.63 83.67 186.50 284.67 189.15 29.45 38.22 81.02 487.12 16.66 13.31 433.28 641.45 460.22 344.83 122.29 115.77 179.42 225.18 184.62 245.33 17 ER2c ExonRegion 1 533.12 398.20 155.57 108.68 170.50 309.87 191.08 54.83 62.01 120.42 604.82 13.89 6.33 504.99 827.87 703.15 453.76 243.73 210.60 215.98 297.14 246.34 398.36 18 E2a_E3a KnownJunction 0 23.78 22.36 4.44 4.46 12.99 15.67 10.91 0.00 0.00 3.89 10.84 0.00 6.82 7.24 4.45 4.36 8.04 2.45 0.00 0.00 0.00 0.00 0.00 19 E2a_E4b KnownJunction 0 44.38 13.62 6.09 9.59 0.00 10.56 4.02 2.55 0.00 4.06 16.53 0.00 0.00 29.67 77.63 35.46 12.62 15.55 19.67 24.93 5.75 2.82 11.61 20 E2a_E7a KnownJunction 1 1989.54 1269.58 427.69 304.82 504.24 714.76 457.26 177.93 157.06 255.81 1440.10 18.46 25.81 1069.11 2804.14 1675.97 1062.08 621.26 716.44 570.84 616.35 469.05 903.23 21 ER2d ExonRegion 1 1211.28 886.23 384.40 266.85 348.38 518.78 338.27 168.01 141.05 250.48 1206.71 15.15 26.26 888.39 2050.32 1364.80 917.98 580.93 541.19 443.62 537.93 414.00 751.78 22 ER3a ExonRegion 0 1.57 2.31 0.88 1.84 2.10 1.58 0.78 0.00 0.00 1.86 2.55 0.00 0.24 1.08 1.07 1.62 2.13 0.00 0.00 0.00 0.00 0.38 0.71 23 E3_Da KnownBoundary 0 2.96 3.35 0.00 3.30 10.70 0.00 3.89 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.96 0.00 0.00 0.00 0.00 0.00 24 E3a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER3b ExonRegion 0 1.60 2.15 0.01 0.04 0.57 1.94 1.34 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E3c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3c ExonRegion 0 0.11 0.00 0.55 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 28 ER4a ExonRegion 0 2.65 3.56 2.08 4.66 2.68 0.20 0.29 2.98 0.48 0.80 0.43 0.00 4.30 1.49 10.88 0.91 0.46 0.51 0.88 5.56 0.67 0.06 4.24 29 E4_Ab KnownBoundary 0 9.33 12.37 7.54 14.92 3.99 0.00 0.00 6.20 1.10 2.20 0.00 0.00 8.12 0.00 30.16 0.00 0.00 9.78 4.80 11.82 2.35 0.00 11.95 30 ER4b ExonRegion 0 13.04 7.51 14.36 15.24 2.70 7.35 1.38 6.47 6.88 5.63 15.04 1.69 1.68 14.64 33.33 13.05 11.52 12.78 8.85 22.90 3.72 2.18 10.74 31 E4_Ac KnownBoundary 0 10.59 18.55 26.91 18.81 0.00 24.13 0.00 9.98 4.02 9.37 16.43 5.55 12.66 36.49 42.15 17.69 25.81 11.86 0.00 31.00 0.00 2.94 6.91 32 ER4c ExonRegion 1 227.72 638.56 195.12 154.24 109.71 428.17 11.40 119.23 109.47 161.58 136.58 12.47 10.41 107.31 268.54 217.83 178.97 276.07 335.39 243.81 134.07 135.05 187.45 33 E4a_E5a KnownJunction 0 0.00 0.00 4.20 0.00 0.00 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E4a_E7a KnownJunction 0 120.24 335.93 183.85 153.96 29.80 61.61 4.50 142.61 103.50 140.43 54.12 5.40 12.66 28.96 98.15 77.24 35.25 220.99 136.95 123.42 42.38 33.31 26.80 35 ER5a ExonRegion 1 4.54 2.52 8.31 7.45 3.68 1.18 4.26 2.97 3.67 4.96 4.45 11.85 22.10 2.67 7.54 5.46 3.01 0.33 2.92 7.17 0.34 4.15 1.35 36 E5a_E7a KnownJunction 0 0.00 0.00 1.54 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER6a ExonRegion 0 3.70 0.51 0.20 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.48 0.00 0.00 0.27 0.24 0.50 1.38 0.77 1.59 0.00 0.73 0.00 0.98 38 I6_AR2 ActiveIntronRegion 0 59.63 7.01 16.84 8.66 14.65 3.56 6.23 11.98 6.12 9.96 7.14 7.26 10.01 6.34 14.37 14.66 2.64 3.06 12.86 4.13 2.64 1.01 4.61 39 ER7a ExonRegion 0 460.26 453.57 477.05 306.08 214.53 250.32 121.30 259.27 227.38 369.94 895.39 194.57 141.61 476.22 914.92 519.10 731.11 442.36 381.95 380.60 566.74 286.88 282.95 40 E7b_E8a KnownJunction 1 212.26 411.37 807.57 564.33 393.89 201.82 56.66 451.16 370.08 610.81 1270.22 312.10 235.54 876.92 1511.22 547.72 1117.62 491.76 766.33 650.04 764.31 656.97 349.05 41 ER7b ExonRegion 0 156.62 355.88 712.55 479.74 287.64 187.96 49.65 401.87 340.27 591.80 1332.73 272.76 175.88 843.73 1423.06 567.68 1122.30 461.01 711.93 628.72 808.76 641.72 345.06 42 I7_SR1 SilentIntronRegion 0 33.97 20.26 20.58 9.86 23.79 9.41 9.53 9.27 11.60 8.80 10.40 8.82 12.24 6.28 16.38 16.67 13.28 6.96 7.92 9.16 6.40 8.87 2.54 43 I7_AR4 ActiveIntronRegion 0 34.68 26.56 50.77 24.37 22.23 9.60 4.40 20.40 12.57 19.40 24.94 22.42 21.50 21.45 35.10 28.72 37.09 17.86 22.55 22.56 10.73 17.31 25.24 44 ER8a ExonRegion 0 255.99 914.28 908.60 610.12 347.37 574.24 161.94 473.45 377.02 643.03 1262.31 281.99 163.30 922.25 1570.34 899.91 938.87 646.28 781.95 570.98 706.85 767.48 458.17 45 E8_Da KnownBoundary 1 389.11 730.20 744.95 585.04 151.02 204.20 73.75 375.33 277.69 438.84 504.44 82.53 19.48 369.42 317.70 544.05 378.12 561.61 510.04 352.95 262.55 531.45 247.64 46 E8_Db KnownBoundary 0 1914.04 1088.16 404.07 489.55 399.41 347.98 71.10 236.83 203.27 291.24 1043.95 222.67 114.77 471.72 782.75 1217.63 786.53 313.59 1184.69 317.35 498.91 774.91 404.11 47 ER8b ExonRegion 0 1517.90 1523.15 1209.44 1025.34 408.50 497.57 137.69 600.06 497.55 760.02 1422.61 380.27 235.28 1080.31 1701.10 1430.58 1116.80 995.94 1410.59 580.14 752.93 1106.70 601.03 48 ER8c ExonRegion 0 743.91 1255.14 862.43 838.51 375.00 548.00 171.81 496.93 419.71 626.74 836.77 370.72 280.49 673.31 854.94 585.04 514.99 562.57 683.93 472.86 362.77 490.48 323.05 49 E8_Dc KnownBoundary 0 902.01 1484.60 972.76 1277.43 382.17 844.34 299.60 597.01 490.53 708.75 591.15 364.32 204.69 497.09 290.87 637.78 336.14 848.14 826.09 471.90 226.91 626.60 286.22 50 ER8d ExonRegion 0 197.00 683.56 545.10 563.37 239.76 471.20 127.34 343.52 318.24 446.71 416.38 254.88 132.88 346.74 395.80 333.73 228.02 436.66 496.54 393.73 223.91 246.58 216.72 51 E8_Dd KnownBoundary 1 293.98 358.62 218.09 191.55 66.30 168.09 80.46 134.52 127.11 132.59 189.42 24.46 13.15 153.16 204.22 140.73 67.23 106.00 135.53 156.47 73.76 81.93 83.57 52 ER8e ExonRegion 0 124.22 148.92 128.19 112.60 23.67 73.21 30.25 68.21 61.38 76.84 120.43 19.98 9.38 114.06 176.98 65.62 39.86 59.55 63.95 85.60 44.07 45.52 45.63 53 ER8f ExonRegion 1 88.89 99.65 101.30 82.41 17.48 56.24 25.07 45.29 41.66 51.53 85.05 10.39 7.50 91.49 139.45 41.61 33.67 44.59 44.60 64.11 31.73 30.97 28.00 54 ER8g ExonRegion 0 24.93 35.25 37.71 23.17 7.43 17.32 6.91 11.72 15.10 15.93 24.91 7.22 3.13 26.89 48.68 12.22 12.10 19.30 14.87 20.80 10.77 9.49 6.85