Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PIK3IP1 Gene 0 78.96 12.22 18.25 21.13 71.38 60.30 23.11 34.02 47.54 14.58 9.64 4.82 5.76 11.67 10.01 13.20 8.10 18.75 14.15 20.49 30.59 10.23 7.76 2 487265 Transcript 0 5.62 2.70 0.84 1.44 5.25 4.13 6.22 0.89 2.12 1.17 2.27 3.76 3.17 1.80 3.26 4.29 4.00 2.63 3.86 4.39 1.65 1.53 3.39 3 416925 Transcript 0 3.33 2.96 1.33 7.49 38.96 53.83 9.49 5.34 10.42 1.67 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 2.76 3.41 4 441972 Transcript 0 13.41 9.27 18.98 10.82 11.54 24.87 10.69 7.35 24.42 13.43 7.11 0.00 6.82 9.83 16.56 7.78 4.77 6.09 8.75 21.67 11.31 3.12 0.00 5 215912 Transcript 0 2.12 0.00 0.00 2.73 2.68 5.50 3.97 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 443175 Transcript 0 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 402249 Transcript 0 44.31 8.19 13.28 11.09 46.70 14.59 12.54 23.97 17.56 1.39 2.74 1.66 2.29 0.70 0.82 2.45 1.22 5.60 7.04 11.60 2.03 1.92 1.62 8 480654 Transcript 0 16.05 0.62 8.45 2.08 17.06 7.96 4.86 7.61 8.51 1.10 1.79 0.00 0.59 0.81 0.25 1.97 1.61 2.59 0.43 2.11 0.28 0.00 1.67 9 493034 Transcript 0 0.00 0.00 0.00 1.73 26.74 5.39 6.76 6.41 1.79 1.29 4.21 12.60 0.00 4.77 0.00 7.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.00 1.09 0.00 0.00 1.06 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.83 0.00 11 ER1b ExonRegion 0 0.35 0.00 1.23 2.27 1.78 5.81 1.32 0.00 0.82 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 2.13 0.37 2.08 0.00 12 ER1c ExonRegion 0 11.16 1.58 7.72 3.24 9.57 40.48 1.52 1.34 4.51 3.44 4.20 0.00 0.00 2.64 7.62 0.00 2.06 2.91 1.11 5.80 4.41 2.08 0.00 13 E1_Ad KnownBoundary 0 21.19 3.35 12.03 7.13 14.94 65.42 0.00 8.46 1.79 3.84 2.47 0.00 0.00 7.59 0.00 0.00 4.77 8.62 0.00 6.46 8.40 0.00 0.00 14 E1_Ae KnownBoundary 0 6.52 0.00 10.53 4.40 15.37 12.78 3.71 4.27 6.37 7.15 2.58 0.00 0.00 2.35 0.00 0.00 3.55 5.93 4.80 8.44 10.69 0.00 0.00 15 ER1d ExonRegion 0 16.93 2.03 13.48 7.72 13.08 50.33 4.27 3.46 9.19 6.88 3.87 0.00 0.00 4.87 2.90 0.00 6.24 5.54 3.19 13.48 6.61 0.69 0.00 16 ER1e ExonRegion 0 147.39 25.66 23.26 21.11 142.08 242.33 44.02 30.81 73.79 28.79 18.25 1.78 3.86 28.69 12.54 24.68 13.85 62.28 53.71 48.56 91.22 29.29 20.18 17 E1_Da KnownBoundary 0 104.24 20.72 27.56 27.77 59.76 70.30 29.10 48.30 74.13 20.36 6.53 0.00 5.84 14.83 8.90 3.25 3.65 25.00 4.24 21.09 42.44 0.00 8.28 18 E1a_E4e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER1f ExonRegion 0 59.41 12.84 21.02 21.27 30.33 55.93 7.90 49.28 74.05 30.07 27.19 7.85 3.86 17.79 14.93 5.45 17.12 14.82 25.20 42.80 104.09 11.42 5.24 20 E1_Db NovelBoundary 0 53.42 0.00 13.57 28.20 24.02 26.52 11.22 20.62 22.89 3.87 12.63 0.00 0.00 11.54 16.69 8.03 0.00 33.87 23.44 14.64 6.05 3.12 8.37 21 E1b_E2a KnownJunction 0 14.45 6.05 11.44 15.98 7.72 23.74 3.97 46.29 123.70 39.84 18.79 0.00 0.00 33.43 29.42 23.75 8.04 30.76 61.74 73.31 91.49 23.94 12.04 22 I1 Intron 0 32.75 3.76 15.92 9.22 27.97 19.47 5.94 18.91 14.67 6.05 4.29 1.69 2.58 4.41 4.42 6.91 2.96 8.20 5.38 12.60 2.32 1.65 2.17 23 I1_AR1 ActiveIntronRegion 0 50.96 7.60 19.68 14.70 46.52 31.16 9.50 31.35 20.21 7.74 6.99 2.38 3.83 6.60 7.58 7.13 2.58 11.67 4.09 14.60 2.94 2.23 3.25 24 I1_SR1 SilentIntronRegion 0 24.49 1.70 17.38 7.27 20.94 13.91 4.83 12.94 13.98 5.99 2.51 1.70 1.01 3.60 2.58 8.44 3.42 8.07 8.49 14.98 2.35 1.50 1.99 25 E2_Aa NovelBoundary 0 13.85 3.16 7.51 1.63 16.64 34.75 10.91 15.32 8.01 6.07 0.00 0.00 0.00 2.83 4.45 8.72 9.54 1.82 0.00 2.94 3.15 0.00 0.00 26 ER2a ExonRegion 0 14.22 5.16 10.89 16.62 21.75 41.50 6.80 27.42 62.32 23.12 9.90 3.77 0.00 22.75 10.54 22.96 9.08 25.77 33.13 28.79 46.30 24.95 13.85 27 E2a_E3a KnownJunction 0 23.26 3.03 12.33 26.67 138.96 291.65 44.03 21.89 51.62 17.46 0.00 7.20 0.00 8.95 9.27 0.00 0.00 8.33 13.08 24.74 32.74 11.45 0.00 28 ER3a ExonRegion 0 20.52 8.63 10.47 22.59 134.52 262.46 42.73 19.64 48.51 13.94 2.87 4.33 0.00 12.75 14.59 3.33 2.70 11.59 13.22 18.76 52.22 13.89 3.03 29 E3_Da KnownBoundary 0 31.26 14.60 13.63 26.14 180.31 297.95 56.22 25.96 56.63 10.96 7.42 0.00 0.00 16.48 24.11 15.89 4.77 18.57 14.40 9.65 81.61 17.70 3.59 30 E3a_E3b KnownJunction 0 3.33 2.96 1.33 7.49 38.96 53.83 9.49 5.34 10.42 1.67 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 2.76 3.41 31 ER3b ExonRegion 0 51.40 15.42 10.59 15.42 92.85 136.80 39.86 28.20 69.48 13.28 12.52 0.06 0.00 15.25 10.87 11.49 8.52 18.26 7.04 21.47 65.19 16.02 6.79 32 E3_Db NovelBoundary 0 9.41 2.57 9.11 3.46 8.15 43.21 10.38 0.00 5.84 8.70 0.00 6.30 0.00 4.94 4.82 4.36 0.00 2.57 3.86 2.88 0.00 8.51 4.35 33 E3b_E4c KnownJunction 0 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E3b_E4d KnownJunction 0 113.72 15.59 11.15 25.60 54.16 146.28 37.10 29.16 89.64 33.12 7.48 10.80 6.33 19.25 15.20 8.37 12.72 19.52 25.69 18.79 66.41 13.59 0.00 35 ER3c ExonRegion 0 64.34 17.69 12.25 18.81 41.07 117.09 30.58 36.99 85.90 25.75 8.31 4.55 0.00 15.92 15.09 7.28 12.38 19.03 16.25 20.32 61.15 15.31 3.67 36 ER4a ExonRegion 0 3.36 0.00 0.04 1.50 8.58 4.74 2.33 1.73 1.02 0.12 0.20 0.00 0.00 0.00 0.50 3.38 0.00 0.19 0.00 0.00 0.00 0.00 0.51 37 ER4b ExonRegion 0 21.46 7.84 7.94 4.19 30.06 15.58 14.29 10.65 10.15 2.44 5.14 4.80 8.63 5.55 11.63 11.33 8.45 4.64 4.42 9.43 4.96 3.61 8.82 38 E4_Da KnownBoundary 0 27.41 0.00 8.75 5.09 29.12 4.88 6.09 12.61 16.06 1.21 9.32 0.00 0.00 0.00 0.00 4.36 3.74 5.64 4.80 9.40 0.00 0.00 8.54 39 E4a_E4d KnownJunction 0 0.00 0.00 0.00 1.73 26.74 5.39 6.76 6.41 1.79 1.29 4.21 12.60 0.00 4.77 0.00 7.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER4c ExonRegion 0 28.74 1.25 16.86 2.65 25.55 11.17 7.39 13.49 16.00 2.09 3.39 0.00 1.19 1.61 0.00 0.56 3.22 5.00 0.86 4.22 0.56 0.00 2.83 41 E4_Ac KnownBoundary 0 68.98 0.00 16.06 0.00 41.77 20.27 10.42 11.09 21.56 1.26 4.90 0.00 0.00 0.00 0.00 0.00 0.00 3.61 4.80 3.26 2.59 0.00 0.00 42 ER4d ExonRegion 0 48.43 3.41 18.27 6.95 26.01 20.33 6.85 13.70 16.57 3.32 3.70 1.27 0.07 0.29 0.21 0.31 0.15 5.62 3.89 5.51 1.59 0.25 2.29 43 E4_Ad KnownBoundary 0 65.12 8.95 16.71 9.49 11.21 21.98 5.92 15.12 12.76 2.82 2.53 5.85 0.00 0.00 0.00 0.00 0.00 5.06 0.00 5.82 0.00 0.00 0.00 44 ER4e ExonRegion 0 121.01 15.46 34.16 48.73 110.07 121.38 30.98 66.58 93.87 30.45 18.86 10.30 8.73 24.92 24.36 18.76 9.28 36.48 16.86 31.44 97.72 16.09 12.86 45 E4_Db KnownBoundary 0 141.06 2.43 30.13 54.01 130.65 109.26 26.76 66.42 64.81 17.22 22.64 0.00 12.82 14.24 4.45 27.60 13.56 34.16 27.95 24.61 95.82 11.94 12.04 46 E4_Ae KnownBoundary 0 90.61 15.92 45.30 49.74 108.74 78.70 13.12 51.96 74.02 21.41 15.00 6.30 6.82 31.96 18.42 19.99 12.90 40.50 13.27 34.26 98.60 24.00 4.35 47 ER4f ExonRegion 0 106.79 12.11 44.95 63.81 111.65 101.78 18.42 77.70 94.32 25.81 20.56 4.33 10.23 28.94 14.77 26.75 9.90 51.07 25.77 40.23 125.31 27.75 12.01 48 ER4g ExonRegion 0 101.15 23.35 37.10 49.94 94.99 75.69 23.70 82.29 130.02 38.01 21.65 7.97 10.59 32.20 15.16 29.45 13.18 56.17 30.82 48.62 99.20 31.48 16.35 49 E4_Dc NovelBoundary 0 36.90 3.35 6.45 7.59 7.47 0.00 4.20 9.36 14.84 2.26 5.11 0.00 6.82 0.00 0.00 3.33 0.00 5.60 0.00 14.45 5.99 0.00 8.71 50 E4c_E5a KnownJunction 0 135.51 17.30 24.42 63.13 155.94 105.28 12.14 110.82 150.87 57.67 22.85 43.66 13.31 27.02 14.09 28.54 4.02 35.36 66.26 48.07 120.90 19.66 15.28 51 E4c_E7a KnownJunction 0 13.41 9.27 18.98 10.82 11.54 24.87 10.69 7.35 24.42 13.43 7.11 0.00 6.82 9.83 16.56 7.78 4.77 6.09 8.75 21.67 11.31 3.12 0.00 52 E5_Aa NovelBoundary 0 43.64 3.35 5.77 6.43 10.87 13.74 8.21 9.20 21.44 0.00 0.00 0.00 6.82 2.47 0.00 4.10 4.77 1.82 3.95 0.00 0.00 0.00 0.00 53 ER5a ExonRegion 0 123.99 14.93 25.83 57.88 198.75 148.14 40.41 105.13 165.46 43.60 27.40 22.63 14.90 28.86 22.81 38.15 14.79 42.59 31.77 42.80 105.14 26.69 18.21 54 E5_Da KnownBoundary 0 40.38 0.00 13.39 9.56 18.76 8.80 17.80 28.55 21.09 1.67 2.42 6.00 0.00 0.00 0.00 7.35 0.00 7.09 0.00 15.85 0.00 0.00 0.00 55 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E5a_E7a KnownJunction 0 126.47 12.10 24.30 77.11 218.85 142.47 42.88 65.76 163.74 38.17 24.53 24.61 26.46 33.96 4.70 27.94 23.38 41.08 26.35 38.99 79.63 26.94 20.23 57 ER5b ExonRegion 0 44.31 8.19 13.28 11.09 46.70 14.59 12.54 23.97 17.56 1.39 2.74 1.66 2.29 0.70 0.82 2.45 1.22 5.60 7.04 11.60 2.03 1.92 1.62 58 E5_Db NovelBoundary 0 175.81 19.86 16.11 17.88 73.17 16.64 21.11 29.70 20.37 8.81 2.58 0.00 14.61 0.00 5.07 8.29 4.39 0.00 8.28 12.14 11.98 0.00 4.01 59 I5 Intron 0 76.26 8.78 15.23 14.14 41.24 11.06 14.34 22.82 17.47 3.37 1.51 1.47 1.18 1.89 1.46 3.32 2.83 4.65 5.34 9.74 1.64 1.71 2.30 60 I5_AR1 ActiveIntronRegion 0 111.78 11.86 15.19 14.80 45.36 12.15 16.15 21.52 20.50 5.50 2.62 3.44 1.05 1.52 0.99 3.35 2.12 2.96 8.19 12.13 1.71 1.68 3.96 61 I5_SR1 SilentIntronRegion 0 65.57 7.85 15.24 13.94 40.00 10.73 13.80 23.21 16.56 2.73 1.18 0.88 1.22 2.00 1.60 3.31 3.04 5.16 4.48 9.02 1.62 1.72 1.80 62 E6_Aa NovelBoundary 0 16.37 5.85 2.60 1.80 8.57 31.86 5.56 0.00 0.00 2.47 0.00 0.00 17.53 2.12 0.00 0.00 0.00 0.00 4.33 3.00 4.63 0.00 0.00 63 ER6a ExonRegion 0 22.47 10.80 3.37 4.69 20.99 16.51 23.82 3.57 8.49 4.68 7.14 15.05 12.67 7.19 13.04 17.15 16.00 10.51 15.44 17.14 6.60 5.30 13.54 64 E6_Da NovelBoundary 0 2020.21 1529.40 1594.15 1930.32 1494.06 1199.71 2285.69 1645.84 1478.49 1536.15 470.96 546.33 615.87 298.25 662.47 1519.26 1194.01 2052.77 916.17 1736.37 799.34 475.48 1374.09 65 I6 Intron 0 24.64 5.57 22.21 16.16 32.02 13.04 11.74 18.90 11.46 8.14 4.35 2.21 4.99 4.66 6.54 5.62 5.38 7.28 7.27 10.34 2.73 1.97 3.26 66 I6_SR1 SilentIntronRegion 0 25.05 5.86 21.69 13.87 26.99 11.18 9.73 15.39 9.10 7.08 3.57 2.59 3.29 4.80 6.12 2.89 4.04 6.98 5.35 7.93 0.99 1.10 2.63 67 I6_AR1 ActiveIntronRegion 0 28.18 6.76 28.89 21.84 38.19 16.56 14.63 25.49 15.60 12.22 6.87 1.18 6.40 5.81 8.23 9.06 7.03 9.69 11.61 14.88 5.16 3.51 4.82 68 I6_SR2 SilentIntronRegion 0 21.59 2.30 14.07 13.35 35.56 11.64 11.10 18.10 11.26 3.10 0.88 4.85 7.88 2.64 5.08 5.39 3.74 4.38 3.61 6.27 1.49 0.94 2.00 69 E7_Aa NovelBoundary 0 53.19 15.33 28.38 27.80 69.44 15.67 39.88 30.76 21.53 11.52 10.32 0.00 12.17 4.94 9.64 3.76 0.00 0.00 17.04 6.26 8.59 0.00 3.76 70 ER7a ExonRegion 0 126.37 16.07 25.38 32.56 103.75 80.09 30.75 48.38 64.81 20.56 11.29 4.00 5.46 14.22 10.33 15.24 7.82 25.02 16.32 24.17 34.45 12.25 6.81 71 E7_Da KnownBoundary 0 6.45 8.42 4.32 8.16 30.81 0.00 0.00 13.31 7.61 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 72 ER7b ExonRegion 0 142.38 6.99 11.59 11.52 58.87 33.15 28.47 21.32 23.41 7.37 0.00 1.97 0.00 1.60 1.58 0.00 2.05 1.71 5.16 8.45 1.54 5.43 0.00 73 ER7c ExonRegion 0 151.94 8.46 9.93 6.89 54.08 42.56 41.60 12.28 15.15 6.46 0.00 2.73 0.00 1.11 0.00 0.00 1.74 1.46 7.71 5.04 0.58 6.80 0.00 74 ER7d ExonRegion 0 2.12 0.00 0.00 2.73 2.68 5.50 3.97 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 IG2 Intergenic 0 80.03 16.60 33.49 30.70 85.15 57.51 27.50 45.61 55.49 24.26 6.96 8.41 8.01 6.39 7.67 8.46 8.71 16.66 18.14 32.17 9.31 6.46 3.44 76 IG2_AR4 ActiveIntergenicRegion 0 32.64 7.51 9.80 12.92 41.30 27.66 19.07 25.02 27.77 15.48 3.24 7.18 4.17 3.62 2.35 2.99 1.11 16.92 10.69 19.26 4.44 3.50 2.96 77 IG2_SR1 SilentIntergenicRegion 0 56.67 18.98 27.02 25.33 69.76 52.67 24.58 34.95 48.47 23.49 5.50 8.17 5.36 4.59 8.10 6.52 8.00 11.97 14.73 31.68 6.17 7.69 1.66 78 IG2_AR2 ActiveIntergenicRegion 0 60.70 18.68 35.95 38.03 101.47 60.54 29.60 47.94 75.08 36.86 12.31 5.20 5.12 5.67 10.62 16.96 9.85 26.72 34.99 32.05 16.85 14.20 4.74 79 IG2_AR1 ActiveIntergenicRegion 0 104.59 17.38 41.96 36.78 101.55 66.66 30.79 55.50 63.55 25.51 8.04 9.16 10.49 8.01 8.42 9.86 10.70 17.97 19.92 35.50 11.28 5.78 4.31