Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AP000525.3 Gene 0 9.13 118.23 77.19 88.65 11.77 22.36 14.55 7.35 4.93 56.02 3.88 1.77 1.90 1.53 2.09 0.62 0.69 29.95 30.08 73.29 1.48 2.01 2.15 2 422937 Transcript 0 1.08 4.48 15.79 0.40 2.09 1.47 2.36 0.32 0.32 27.81 1.48 0.00 0.00 0.32 0.00 0.00 0.00 3.98 1.62 8.60 0.74 0.94 0.79 3 427906 Transcript 0 12.73 23.71 39.96 34.21 7.21 60.59 15.84 21.51 14.91 48.12 15.50 3.49 4.52 8.05 1.75 3.65 5.21 32.84 29.28 90.60 14.73 22.75 18.73 4 413768 Transcript 0 0.00 0.51 1.58 0.45 0.00 0.00 0.00 0.07 0.26 3.20 0.00 0.00 0.00 0.07 0.12 0.00 0.00 0.62 0.66 1.06 0.55 0.00 0.00 5 437781 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 383038 Transcript 0 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 7 447898 Transcript 0 9.22 120.94 71.16 82.42 9.20 14.50 8.98 4.78 2.14 36.53 1.45 0.04 0.26 0.03 0.14 0.00 0.00 19.09 20.91 52.20 0.07 0.00 0.07 8 458623 Transcript 0 1.73 20.57 42.23 56.30 16.02 4.75 44.64 3.19 3.27 23.19 13.11 3.23 4.14 2.34 0.28 1.22 1.35 47.13 41.27 101.15 0.30 0.85 0.40 9 456786 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 IG21_SR2 SilentIntergenicRegion 0 0.00 0.00 2.65 0.49 0.32 0.44 0.32 0.31 0.00 21.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 11 ER1a ExonRegion 0 2.16 8.95 31.58 0.80 4.18 2.94 4.72 0.63 0.64 55.62 2.97 0.00 0.00 0.65 0.00 0.00 0.00 7.96 3.25 17.19 1.48 1.88 1.57 12 E1_Ab KnownBoundary 0 6.74 50.78 42.49 5.76 18.34 23.91 14.75 2.55 3.59 57.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.70 0.00 38.48 5.99 2.88 16.13 13 E1_Ac KnownBoundary 0 7.56 16.97 7.33 1.73 0.00 2.95 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 6.52 0.00 0.00 0.00 14 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ae KnownBoundary 0 3.78 29.21 19.46 9.09 25.98 24.19 15.24 0.00 1.48 12.44 7.84 0.00 0.00 3.00 0.00 0.00 0.00 22.68 18.82 15.60 5.93 0.00 4.35 16 ER1b ExonRegion 0 10.58 76.77 45.85 3.75 25.87 23.23 20.74 3.46 1.24 63.84 9.02 0.00 0.00 0.00 0.00 0.00 0.00 29.10 12.74 47.69 4.41 2.08 11.75 17 ER1c ExonRegion 0 7.94 71.18 42.58 4.09 16.72 17.42 18.20 3.46 1.24 62.22 11.60 0.00 0.00 0.00 0.00 0.00 0.00 29.56 12.74 39.36 4.41 1.56 7.34 18 E1_Af KnownBoundary 0 0.00 0.00 12.18 19.44 0.00 8.12 0.00 7.60 1.19 19.31 10.63 0.00 0.00 0.00 0.00 0.00 0.00 35.53 4.52 12.85 0.00 0.00 0.00 19 ER1d ExonRegion 0 6.35 69.55 42.64 5.18 18.20 18.34 16.68 4.84 1.24 69.96 11.60 0.00 0.00 0.00 0.00 0.00 0.00 39.91 17.84 51.91 2.20 0.00 3.52 20 ER1e ExonRegion 0 5.03 47.87 37.07 9.14 18.28 23.61 23.33 5.19 3.09 61.41 13.05 0.00 0.00 0.00 0.00 0.00 0.00 60.13 48.05 82.54 2.20 0.00 2.94 21 E1_Da KnownBoundary 0 50.23 176.42 121.76 75.41 56.11 65.59 106.87 4.60 8.56 91.60 18.06 0.00 0.00 0.00 0.00 0.00 0.00 419.84 227.96 292.61 0.00 0.00 3.84 22 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER1f ExonRegion 0 2.65 27.55 37.31 16.22 5.62 19.35 46.34 5.19 3.27 77.53 6.77 0.00 0.00 0.00 0.00 0.00 0.00 89.89 100.66 150.00 0.22 0.00 0.88 24 ER1g ExonRegion 0 2.92 48.49 54.76 22.56 4.70 36.51 33.66 1.92 4.28 103.32 5.46 0.00 0.00 0.00 0.00 2.77 0.00 72.88 107.74 128.13 1.86 1.20 2.74 25 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E1b_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER1h ExonRegion 0 4.58 32.15 62.82 34.98 10.35 65.24 31.67 14.35 7.68 77.86 16.42 1.44 2.22 6.51 3.49 3.87 1.73 64.02 54.51 147.13 12.84 15.31 18.52 29 E1_Dc NovelBoundary 0 10.59 45.39 173.68 124.43 21.56 29.53 44.03 16.68 10.45 174.31 22.58 0.00 0.00 0.00 0.00 0.00 4.77 150.19 94.87 169.12 0.00 2.76 4.35 30 E1c_E2a KnownJunction 0 20.89 15.26 17.09 33.43 4.07 55.93 0.00 28.67 22.14 18.37 14.58 5.55 6.82 9.59 0.00 3.42 8.70 1.66 4.05 34.07 16.62 30.19 18.95 31 ER2a ExonRegion 0 2.33 30.05 16.12 19.12 4.60 14.98 6.21 13.16 5.95 52.36 9.91 1.01 0.85 3.20 1.67 1.69 1.52 7.07 4.94 23.96 5.84 11.28 14.31 32 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER3a ExonRegion 0 1.18 7.06 4.18 12.43 1.02 33.39 4.87 7.52 3.49 7.29 1.48 2.80 0.00 9.84 0.68 0.00 0.00 0.22 5.62 3.07 0.13 10.66 15.29 35 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER3b ExonRegion 0 0.00 12.56 30.09 34.60 3.59 23.92 4.15 10.67 9.21 36.89 2.34 14.51 5.18 3.99 0.92 0.96 1.10 35.53 21.12 30.29 0.77 8.44 4.25 37 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER4a ExonRegion 0 0.00 12.46 61.04 52.22 0.00 12.03 1.32 21.61 13.05 96.84 11.36 10.28 0.00 6.50 0.00 2.60 11.14 35.11 25.08 60.64 8.81 5.73 4.22 39 ER4b ExonRegion 0 5.36 29.87 59.67 36.56 5.52 10.39 7.19 18.29 21.69 98.16 1.95 0.09 2.05 1.10 0.00 0.00 3.99 30.76 8.63 24.20 2.43 0.85 0.67 40 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E4b_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER5a ExonRegion 0 16.85 136.49 195.08 170.69 27.61 126.61 30.87 47.71 73.51 251.03 34.64 40.70 19.14 11.82 3.13 8.92 22.97 174.43 108.68 209.70 15.60 33.84 17.50 43 E5_Ac KnownBoundary 0 40.75 367.30 412.23 269.90 114.01 223.22 98.44 82.52 60.82 348.72 74.39 48.02 27.11 17.60 13.35 16.32 17.77 351.07 234.36 374.68 29.71 37.41 39.95 44 ER5b ExonRegion 0 19.40 198.70 221.08 198.19 51.29 207.52 48.21 57.26 84.71 280.42 52.99 81.18 36.93 21.32 11.61 14.86 32.73 203.56 150.77 289.72 28.46 49.22 29.12 45 ER5c ExonRegion 0 3.66 41.38 72.15 56.48 12.33 30.29 11.89 18.76 26.23 96.58 7.60 7.88 2.85 2.30 0.72 2.00 3.49 52.67 23.30 38.63 5.30 6.53 3.86 46 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 E6_Aa NovelBoundary 0 0.00 3.35 7.54 0.00 0.00 0.00 8.13 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.03 3.76 11.25 0.00 0.00 0.00 49 ER6a ExonRegion 0 0.00 1.53 4.75 1.36 0.00 0.00 0.00 0.22 0.77 9.61 0.00 0.00 0.00 0.20 0.36 0.00 0.00 1.85 1.99 3.19 1.65 0.00 0.00 50 ER6b ExonRegion 0 4.00 15.41 19.73 13.35 5.39 1.32 7.33 0.88 3.73 23.04 3.18 17.32 24.63 20.92 31.03 4.49 1.25 19.87 16.12 34.52 2.50 0.79 3.33 51 E6a_E7a KnownJunction 0 0.00 6.45 22.06 17.51 10.78 0.00 36.17 0.00 1.79 7.58 6.90 0.00 0.00 0.00 0.00 0.00 0.00 22.72 12.24 23.39 0.00 0.00 0.00 52 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E7_Aa NovelBoundary 0 3.04 65.45 84.89 134.55 18.25 7.50 96.98 6.16 9.14 44.19 4.32 0.00 14.77 0.00 0.00 0.00 0.00 35.11 89.04 174.49 0.00 0.00 4.27 54 ER7a ExonRegion 0 3.46 34.69 62.40 95.09 21.26 9.50 53.11 6.38 4.74 38.80 19.32 6.46 8.28 4.67 0.56 2.43 2.70 71.54 70.30 178.90 0.60 1.70 0.80 55 E7_Da NovelBoundary 0 10.45 51.90 102.36 156.12 7.89 22.09 72.60 17.17 5.87 50.50 20.11 0.00 19.64 2.47 0.00 0.00 0.00 89.04 138.64 281.75 3.15 5.63 6.74 56 Ix_AR1 ActiveIntronRegion 0 0.00 3.88 12.49 17.60 3.19 0.00 3.79 0.73 0.00 20.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.77 0.99 0.00 0.00 0.00 57 Ix Intron 0 2.45 25.86 38.29 36.33 8.46 1.96 7.48 4.73 0.00 17.14 0.93 0.00 0.00 0.00 0.00 0.00 0.00 6.41 5.85 23.44 0.00 0.06 0.17 58 Ix_AR2 ActiveIntronRegion 0 2.54 13.83 45.67 37.84 6.91 0.99 6.68 5.56 0.00 20.53 0.23 0.00 0.00 0.00 0.00 0.00 0.00 2.89 0.96 16.35 0.00 0.13 0.00 59 Ix_SR1 SilentIntronRegion 0 0.48 20.93 20.57 34.66 4.13 3.50 8.73 2.28 0.00 7.80 2.29 0.00 0.00 0.00 0.00 0.00 0.00 12.98 9.23 18.94 0.00 0.00 0.00 60 Ix_AR1 ActiveIntronRegion 0 2.92 41.15 35.05 35.17 11.53 2.64 8.06 4.50 0.00 16.01 1.34 0.00 0.00 0.00 0.00 0.00 0.00 8.57 10.50 32.94 0.00 0.00 0.40 61 ER8a ExonRegion 0 0.00 60.07 0.40 2.13 5.26 7.74 4.45 0.97 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 2.38 0.00 0.00 0.00 62 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E8a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 Ix Intron 0 1.85 21.76 33.77 14.91 4.69 8.64 8.62 5.55 1.00 56.09 1.97 0.00 0.00 0.00 0.00 0.00 0.00 55.29 25.27 34.01 0.00 0.00 0.00 65 Ix_AR6 ActiveIntronRegion 0 2.40 16.05 49.31 23.25 4.66 6.77 6.80 8.33 1.19 65.86 2.75 0.00 0.00 0.00 0.00 0.00 0.00 111.88 56.89 62.99 0.00 0.00 0.00 66 Ix_SR2 SilentIntronRegion 0 3.04 40.46 16.52 5.21 1.10 5.52 5.82 0.70 0.99 18.81 2.10 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 3.56 0.00 0.00 0.00 67 Ix_AR5 ActiveIntronRegion 0 6.35 41.35 10.01 8.18 8.03 9.17 22.51 0.00 0.41 17.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.02 0.00 3.19 0.00 0.00 0.00 68 Ix_AR4 ActiveIntronRegion 0 5.29 45.42 10.42 8.18 10.70 7.95 27.14 0.00 0.41 14.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.64 0.00 3.90 0.00 0.00 0.00 69 Ix_AR3 ActiveIntronRegion 0 4.23 44.74 16.34 10.45 13.38 3.36 28.91 0.00 1.24 17.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.96 2.12 7.45 0.00 0.00 0.00 70 Ix_AR2 ActiveIntronRegion 0 1.61 28.77 29.34 24.55 6.99 11.06 14.43 3.16 0.31 76.23 2.62 0.00 0.00 0.00 0.00 0.00 0.00 67.91 20.42 26.52 0.00 0.00 0.00 71 Ix_AR1 ActiveIntronRegion 0 2.15 21.90 85.71 7.84 10.33 13.04 6.99 6.28 4.49 121.90 1.96 0.00 0.00 0.00 0.00 0.00 0.00 51.13 22.67 79.11 0.00 0.00 0.00 72 ER9a ExonRegion 0 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 73 E9_Da NovelBoundary 0 17.93 211.61 371.87 199.44 56.37 56.79 67.97 64.53 21.15 427.86 55.22 0.00 0.00 0.00 0.00 0.00 0.00 536.82 459.87 636.30 0.00 0.00 0.00 74 I9_SR2 SilentIntronRegion 0 15.01 122.63 47.65 31.59 13.46 11.72 10.60 20.43 2.71 27.89 2.34 0.00 0.00 0.00 0.00 0.00 0.00 36.42 24.68 52.34 0.00 0.00 0.00 75 I9_AR3 ActiveIntronRegion 0 3.04 39.86 57.43 62.63 10.17 13.33 5.70 7.57 4.26 75.58 0.32 0.00 0.00 0.00 0.00 0.00 0.00 54.57 23.39 59.43 0.00 0.23 0.16 76 I9_SR4 SilentIntronRegion 0 3.86 70.18 8.04 14.61 7.66 10.97 12.85 0.36 0.71 15.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.01 31.05 26.89 0.00 0.00 0.00 77 I9_AR5 ActiveIntronRegion 0 3.68 65.65 16.76 34.47 5.06 8.50 5.44 1.23 2.47 29.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.83 19.44 29.82 0.00 0.00 0.00 78 ER10a ExonRegion 0 2.25 46.71 59.73 81.62 6.25 6.25 3.48 0.64 3.90 49.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.67 25.33 35.19 0.00 0.00 0.00 79 E10_Ab KnownBoundary 0 7.56 171.55 11.18 15.62 35.23 37.99 39.66 14.01 3.36 8.38 2.63 0.00 0.00 0.00 0.00 0.00 0.00 8.33 9.22 8.63 0.00 0.00 0.00 80 ER10b ExonRegion 0 4.26 77.97 34.49 61.28 8.08 16.50 9.11 4.31 4.51 37.04 0.18 0.00 0.43 0.00 0.00 0.00 0.37 15.03 21.29 45.32 0.00 0.00 0.00 81 E10_Da KnownBoundary 0 10.52 244.23 187.07 165.05 23.77 10.22 12.19 13.55 6.83 169.93 23.11 0.00 0.00 0.00 0.00 0.00 0.00 32.00 32.57 169.38 0.00 0.00 0.00 82 ER10c ExonRegion 0 6.46 83.23 41.23 68.53 13.03 16.05 13.91 5.96 2.92 64.39 0.87 2.08 5.39 1.20 15.97 0.00 0.47 23.15 17.22 67.73 0.00 0.00 0.00 83 E10_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84 ER10d ExonRegion 0 8.23 95.30 24.32 42.68 9.09 15.71 13.36 6.28 0.00 22.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.21 4.45 35.89 0.00 0.00 0.00 85 E10_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 ER10e ExonRegion 0 18.44 241.89 142.32 164.83 18.39 29.01 17.96 9.57 4.29 73.06 2.90 0.08 0.52 0.06 0.28 0.00 0.00 38.17 41.83 104.40 0.15 0.00 0.13 87 IG20_AR1 ActiveIntergenicRegion 0 2.46 11.42 19.05 22.25 1.80 0.16 0.82 0.00 0.00 8.77 2.79 0.00 0.00 0.00 0.00 0.00 0.00 8.92 15.99 51.93 0.00 0.00 0.00