Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIAA1671 Gene 0 13.66 2.81 13.54 5.40 11.97 4.17 7.83 10.19 20.94 5.32 1.58 5.15 1.90 1.37 2.00 0.43 7.63 3.18 18.16 7.04 7.29 15.89 14.27 2 443695 Transcript 0 0.36 0.00 1.63 0.80 5.18 0.92 5.15 5.17 6.54 3.46 0.32 0.09 0.00 0.00 0.00 0.00 0.00 4.63 87.42 0.78 11.72 13.25 68.13 3 406486 Transcript 0 1.08 0.01 0.00 0.14 1.13 0.00 0.28 0.51 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.70 0.53 0.20 0.19 0.07 4 358431 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 494730 Transcript 0 0.70 0.12 1.13 0.58 0.42 0.16 0.89 0.95 1.89 0.45 0.18 0.03 0.11 0.14 0.04 0.00 0.49 0.31 1.94 0.71 0.77 1.43 1.25 6 461374 Transcript 0 1.72 0.00 0.41 0.33 0.00 0.00 0.65 0.49 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.37 0.00 0.00 1.52 7 401395 Transcript 0 2.21 0.15 0.42 1.20 0.41 0.21 0.63 0.39 2.87 1.42 0.07 0.14 0.00 2.56 0.00 0.00 2.32 0.10 0.60 0.24 0.25 0.32 1.23 8 ER1a ExonRegion 0 0.71 0.00 1.70 0.00 2.13 1.85 1.55 2.91 3.16 2.14 0.65 0.17 0.00 0.00 0.00 0.00 0.00 2.78 25.46 1.55 8.42 8.62 17.60 9 E1a_E3b KnownJunction 0 0.00 0.00 1.57 1.60 8.23 0.00 8.74 7.43 9.92 4.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.47 149.37 0.00 15.01 17.88 118.65 10 ER2a ExonRegion 0 1.29 0.00 0.00 0.41 2.72 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E3_Aa NovelBoundary 0 10.59 3.35 0.00 0.00 3.57 0.00 1.85 2.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER3a ExonRegion 0 1.95 0.03 0.01 0.00 0.69 0.00 0.85 1.00 1.37 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 1.41 2.09 0.28 0.59 0.56 0.21 14 E3_Ab KnownBoundary 0 6.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 15 E3_Ac KnownBoundary 0 9.93 3.16 1.80 1.37 0.00 0.00 2.25 8.75 3.53 2.44 0.00 5.55 0.00 0.00 0.00 0.00 0.00 7.13 56.28 6.07 0.00 17.33 32.78 16 ER3b ExonRegion 0 10.58 2.03 2.11 0.52 2.68 0.00 6.67 6.91 9.41 3.88 0.00 4.33 0.00 0.00 0.00 0.00 0.00 5.73 115.00 4.26 9.12 18.97 84.15 17 ER3c ExonRegion 0 1.71 0.13 1.05 1.84 0.58 0.38 2.63 4.67 3.98 2.06 0.00 0.11 0.00 0.00 0.00 0.00 0.00 1.78 18.06 2.05 2.19 7.91 5.31 18 E3_Da KnownBoundary 0 0.00 0.00 3.08 2.06 0.00 0.00 0.00 2.26 4.20 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.69 21.93 0.00 8.59 11.94 8.54 19 ER3d ExonRegion 0 1.64 0.08 2.96 0.62 0.74 0.07 2.24 1.82 6.94 1.99 0.82 0.00 0.00 0.09 0.00 0.00 0.26 3.76 15.01 4.31 8.03 5.72 10.17 20 E3b_E4a KnownJunction 0 0.00 0.00 3.05 2.06 0.00 0.00 0.00 0.00 8.51 2.95 0.00 0.00 0.00 2.35 0.00 0.00 0.00 4.31 4.33 3.26 6.30 14.63 19.38 21 ER4a ExonRegion 0 1.23 0.00 5.21 1.46 4.47 0.00 1.87 0.98 14.91 6.23 3.08 0.00 0.00 0.17 0.00 0.00 0.00 4.87 20.99 5.42 6.89 7.88 21.26 22 E4a_E5a KnownJunction 0 0.00 0.00 8.43 3.46 0.00 0.00 4.02 2.34 10.62 8.19 4.69 0.00 0.00 0.00 0.00 0.00 0.00 9.00 22.49 8.63 14.52 5.14 32.10 23 ER5a ExonRegion 0 3.39 0.68 5.12 2.09 3.97 1.33 3.82 4.70 13.08 3.80 2.35 0.10 0.59 0.22 0.00 0.00 0.05 4.60 27.46 7.84 11.41 16.37 22.80 24 E5_Ab KnownBoundary 0 3.63 0.00 10.91 6.56 8.57 0.00 12.90 9.00 17.77 3.87 2.16 0.00 0.00 0.00 0.00 0.00 4.77 10.28 108.43 5.62 21.13 43.60 58.39 25 ER5b ExonRegion 0 4.05 1.39 3.91 1.58 5.36 3.32 3.83 4.72 10.48 4.82 1.81 0.25 0.00 0.09 0.29 0.00 0.35 4.58 28.40 5.98 12.89 14.35 14.87 26 E5_Ac KnownBoundary 0 3.19 2.63 1.60 3.60 3.57 0.00 0.00 7.76 10.88 1.26 2.53 0.00 0.00 0.00 0.00 0.00 0.00 7.50 44.42 2.88 17.98 11.21 20.57 27 ER5c ExonRegion 0 4.33 1.06 2.43 3.32 4.58 0.00 3.75 8.59 13.02 1.90 1.08 0.00 0.00 0.64 0.00 0.00 0.00 4.33 23.50 4.40 15.61 19.55 18.33 28 E5a_E6a KnownJunction 0 16.15 0.00 1.83 5.49 0.00 0.00 6.45 0.00 16.41 4.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.00 45.93 3.26 19.77 21.49 18.18 29 ER6a ExonRegion 0 2.16 0.50 2.63 2.46 1.09 0.00 2.23 3.34 13.24 3.06 3.77 0.00 0.00 0.04 0.00 0.00 0.00 2.40 15.57 7.53 11.98 24.52 24.32 30 E6_Da KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 2.26 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 4.35 31 E6a_E8b KnownJunction 0 0.00 3.22 5.85 1.86 0.00 0.00 1.85 5.79 15.60 6.77 9.37 0.00 0.00 0.00 0.00 0.00 0.00 4.97 30.59 0.00 13.47 23.33 33.29 32 E6_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.14 0.00 0.00 0.00 0.00 33 E6b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER6b ExonRegion 0 0.00 0.00 1.23 0.34 0.00 0.00 0.00 1.73 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 2.13 0.00 0.00 2.94 35 ER6c ExonRegion 0 1.72 0.00 0.41 0.33 0.00 0.00 0.65 0.49 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.37 0.00 0.00 1.52 36 E6_Dc NovelBoundary 0 16.15 0.00 1.83 1.53 0.00 0.00 1.85 1.73 3.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 12.89 2.56 0.00 0.00 4.35 37 ER7a ExonRegion 0 2.41 0.46 1.25 2.12 1.22 0.63 0.90 1.17 3.88 0.48 0.22 0.41 0.00 0.80 0.00 0.00 3.32 0.31 1.81 0.73 0.75 0.95 3.68 38 E7a_E8b KnownJunction 0 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 4.75 2.63 0.00 0.00 0.00 6.89 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 39 ER8a ExonRegion 0 0.00 0.23 0.41 1.67 0.00 0.00 0.15 0.77 2.88 0.64 0.64 0.00 0.00 0.54 0.00 0.00 0.37 0.41 4.25 0.47 1.71 3.94 2.61 40 ER8b ExonRegion 0 3.26 6.67 13.11 2.03 2.40 1.55 2.17 8.88 21.65 5.02 7.67 4.77 3.34 3.87 1.35 0.00 9.48 2.18 26.00 13.04 10.48 17.13 16.60 41 E8a_E9a KnownJunction 0 6.30 12.63 18.33 3.23 0.00 5.79 0.00 9.04 34.09 4.35 4.53 0.00 0.00 0.00 4.45 0.00 13.00 6.30 26.26 33.17 5.31 19.47 49.68 42 ER9a ExonRegion 0 2.95 1.97 14.73 2.08 1.05 1.97 4.51 8.60 24.37 3.59 3.29 5.75 1.16 4.07 1.23 0.00 17.40 3.88 23.66 17.59 10.18 16.78 26.79 43 E9_Da KnownBoundary 0 0.00 0.00 2.87 0.00 0.00 0.00 0.00 6.74 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 44 E9a_E9b KnownJunction 0 6.82 0.00 11.80 1.93 0.00 2.27 5.92 11.42 28.59 3.22 2.32 0.00 6.82 15.19 4.45 0.00 35.06 4.27 29.65 18.41 17.48 20.08 19.97 45 ER9b ExonRegion 0 0.77 0.04 2.98 0.36 0.67 0.07 1.34 1.94 3.04 0.64 0.07 0.00 0.00 0.00 0.15 0.00 1.07 0.50 2.40 0.99 0.87 1.29 1.38 46 E9_Ab KnownBoundary 0 3.78 0.00 0.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 3.76 47 ER9c ExonRegion 0 4.09 2.17 8.68 1.74 6.92 4.71 3.69 11.20 23.56 4.36 0.51 4.53 2.80 4.29 3.82 0.00 23.11 3.60 24.49 13.41 13.31 14.27 21.54 48 E9b_E10a KnownJunction 0 6.82 3.22 14.19 1.76 3.14 9.82 6.23 17.79 31.74 3.73 2.68 6.00 15.10 10.07 4.45 0.00 19.35 8.62 35.30 7.80 2.29 19.96 30.13 49 ER10a ExonRegion 0 4.50 1.12 13.70 3.23 8.56 6.03 10.61 11.93 31.16 6.17 1.89 6.89 5.93 2.78 2.51 0.00 14.55 6.87 18.02 21.99 10.65 20.59 12.69 50 E10a_E11a KnownJunction 0 9.26 0.00 17.89 5.79 20.88 0.00 7.68 2.26 40.31 2.74 0.00 12.60 13.64 5.47 4.45 0.00 22.07 12.02 12.24 26.40 14.15 22.72 20.74 51 ER11a ExonRegion 0 4.09 0.00 15.60 1.60 14.03 3.83 8.37 14.02 41.58 5.95 2.87 3.81 2.33 1.83 3.33 0.00 21.81 9.57 25.84 18.64 9.18 25.53 22.10 52 E11_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 0.00 0.00 53 E11a_E12a KnownJunction 0 7.41 0.00 11.56 2.06 7.30 2.90 10.91 5.96 49.22 10.05 5.37 0.00 0.00 0.00 0.00 0.00 35.72 6.59 25.98 23.39 13.78 13.47 11.01 54 ER11b ExonRegion 0 2.04 0.23 1.12 0.31 1.02 0.56 2.08 1.08 1.62 0.52 0.00 0.14 0.44 0.00 0.00 0.00 0.51 0.35 1.10 1.36 0.50 0.48 1.01 55 ER12a ExonRegion 0 8.93 1.25 11.31 2.30 10.45 11.33 8.52 8.93 48.90 6.59 3.63 4.23 0.00 3.01 3.67 0.00 21.83 3.41 26.71 14.97 12.53 21.16 8.56 56 E12a_E13a KnownJunction 0 31.93 0.00 11.74 5.29 3.23 10.45 7.82 12.86 56.02 6.58 2.47 0.00 0.00 2.47 0.00 0.00 12.16 0.00 28.80 8.50 11.37 16.35 8.45 57 ER13a ExonRegion 0 9.26 3.61 17.01 5.73 7.10 6.39 6.41 7.65 40.83 5.40 1.78 5.23 2.47 1.18 1.38 0.00 15.14 4.43 25.34 16.44 9.90 18.79 9.14 58 E13_Da KnownBoundary 0 13.41 2.83 15.46 3.03 12.14 7.95 18.02 8.71 33.85 5.80 2.05 0.00 0.00 0.00 0.00 0.00 16.83 6.47 35.67 23.97 3.09 13.78 8.11 59 ER13b ExonRegion 0 41.20 8.32 37.00 15.71 35.58 11.78 20.65 26.95 50.75 13.21 3.05 16.26 5.56 3.76 6.21 1.47 20.63 5.09 30.42 13.03 11.39 36.29 26.00 60 ER13c ExonRegion 0 4.23 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00