Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GSTT1 Gene 0 14.46 3.66 32.46 13.55 6.36 7.00 2.70 7.70 16.33 10.06 38.69 12.08 6.01 12.39 1.87 19.32 4.76 0.00 0.04 0.14 29.08 21.88 0.00 2 447865 Transcript 0 0.16 0.60 1.26 0.75 0.39 0.12 0.10 0.38 2.30 1.53 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 3 248935 Transcript 0 3.17 3.20 1.93 2.82 4.78 8.65 2.08 0.00 0.09 2.62 5.38 0.00 0.00 4.41 0.00 4.67 0.94 0.00 0.00 0.00 6.45 3.72 0.00 4 486544 Transcript 0 0.07 0.10 0.11 0.12 0.00 0.01 0.14 0.00 0.00 0.00 1.04 1.50 1.16 0.73 1.36 0.21 0.00 0.00 0.07 0.32 0.00 0.12 0.00 5 428175 Transcript 0 0.07 0.01 0.78 0.05 0.05 0.01 0.00 0.04 0.22 0.04 0.35 0.06 0.02 0.05 0.02 0.58 0.04 0.00 0.00 0.00 2.41 1.20 0.00 6 480898 Transcript 0 0.20 0.19 0.06 0.00 0.00 0.06 0.00 0.16 0.23 0.11 0.06 0.77 0.36 0.25 0.19 0.74 0.00 0.00 0.00 0.00 0.14 0.19 0.00 7 418883 Transcript 0 0.00 1.55 0.84 0.00 0.00 0.00 0.00 0.78 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 382792 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 452369 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 417489 Transcript 0 0.00 0.00 12.39 3.50 0.00 0.00 0.00 0.00 6.86 4.19 13.27 6.30 5.84 5.12 0.00 3.25 3.55 0.00 0.00 0.00 20.88 0.00 0.00 11 458231 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 417831 Transcript 0 0.00 0.00 5.20 1.63 3.31 0.00 0.00 3.57 3.88 2.47 11.95 5.55 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 8.65 3.12 0.00 13 417870 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 426209 Transcript 0 3.48 0.00 5.20 0.00 0.00 0.00 0.00 0.00 0.00 1.29 5.16 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 436103 Transcript 0 0.00 0.00 2.99 7.03 0.00 2.90 0.00 2.42 0.00 4.27 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 16 ER1a ExonRegion 0 0.31 1.20 0.89 1.49 0.79 0.23 0.19 0.76 4.60 1.38 0.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 17 E1a_E2g KnownJunction 0 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2a ExonRegion 0 3.17 3.20 1.93 2.82 4.78 8.65 2.08 0.00 0.09 2.62 5.38 0.00 0.00 4.41 0.00 4.67 0.94 0.00 0.00 0.00 6.45 3.72 0.00 19 E2_Af KnownBoundary 0 0.00 0.00 1.80 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2_Ag KnownBoundary 0 58.45 2.89 13.96 7.46 3.74 22.03 1.68 7.19 3.91 3.30 15.53 0.00 0.00 2.59 0.00 32.38 0.00 0.00 0.00 0.00 5.62 39.99 0.00 21 ER2b ExonRegion 0 7.41 4.07 2.45 4.09 5.35 13.75 2.65 0.00 1.24 3.44 7.73 0.00 0.00 4.87 0.00 5.94 3.30 0.00 0.00 0.00 11.02 8.33 0.00 22 ER2c ExonRegion 0 16.93 4.83 5.05 5.28 6.35 16.73 3.81 1.73 1.70 3.44 10.15 0.00 3.52 5.48 0.00 12.26 3.30 0.00 0.00 0.00 12.95 16.15 0.00 23 ER2d ExonRegion 0 35.98 6.10 9.80 8.18 8.03 18.34 3.97 5.19 2.47 3.44 15.46 0.00 4.69 6.50 0.00 26.75 3.30 0.00 0.00 0.00 13.22 35.42 0.00 24 ER2e ExonRegion 0 58.56 7.46 17.36 11.81 14.27 31.17 8.61 6.63 8.65 10.32 30.93 0.00 4.69 10.83 0.00 43.10 4.40 0.00 0.00 0.00 25.34 60.77 0.00 25 ER2f ExonRegion 0 98.42 10.17 33.39 16.35 24.08 53.64 15.23 10.37 19.45 19.78 54.60 0.00 4.69 20.30 0.00 73.56 6.60 0.00 0.00 0.00 47.38 120.84 0.00 26 ER2g ExonRegion 0 79.62 9.06 53.51 23.72 19.73 32.79 14.10 13.94 35.64 26.15 69.37 9.84 3.30 26.80 1.65 59.61 9.05 0.00 0.00 0.00 59.22 72.73 0.00 27 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E2a_E4a KnownJunction 0 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 30 E2a_E4b KnownJunction 0 21.93 0.00 68.66 17.48 17.83 4.66 0.00 12.40 39.53 13.54 104.50 23.56 6.17 24.96 8.90 23.50 17.11 0.00 0.00 0.00 121.95 33.25 0.00 31 E2a_E5a KnownJunction 0 0.00 0.00 12.39 3.50 0.00 0.00 0.00 0.00 6.86 4.19 13.27 6.30 5.84 5.12 0.00 3.25 3.55 0.00 0.00 0.00 20.88 0.00 0.00 32 E2a_E5c KnownJunction 0 3.48 0.00 5.20 0.00 0.00 0.00 0.00 0.00 0.00 1.29 5.16 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E2a_E7a KnownJunction 0 0.00 0.00 5.20 1.63 3.31 0.00 0.00 3.57 3.88 2.47 11.95 5.55 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 8.65 3.12 0.00 34 E2a_E8a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 6.67 1.60 5.87 5.59 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 0.00 0.00 35 E3_Aa NovelBoundary 0 12.89 0.00 11.97 9.79 0.00 9.88 0.00 2.55 8.88 7.06 2.00 13.20 0.00 9.42 8.90 10.94 3.65 0.00 0.00 0.00 6.05 6.00 0.00 36 ER3a ExonRegion 0 0.21 0.30 0.33 0.36 0.00 0.04 0.42 0.00 0.00 0.00 0.45 4.50 3.49 2.19 4.09 0.62 0.01 0.00 0.22 0.95 0.00 0.37 0.00 37 E3_Ab KnownBoundary 0 177.44 135.17 163.74 173.27 93.38 89.72 191.89 128.81 155.24 136.59 33.38 28.21 23.05 20.43 45.86 153.21 122.95 192.72 151.16 169.64 89.70 46.90 159.29 38 ER3b ExonRegion 0 0.47 2.75 0.29 0.00 0.00 2.48 3.25 0.00 0.53 0.00 1.11 3.33 3.47 1.08 1.83 1.21 1.44 0.00 0.94 2.50 1.04 1.18 0.00 39 E3_Da KnownBoundary 0 3.33 0.00 3.52 1.96 0.00 0.00 0.00 2.26 1.07 4.46 0.00 5.85 0.00 0.00 4.57 3.50 3.65 0.00 0.00 0.00 0.00 0.00 0.00 40 E3a_E4b KnownJunction 0 0.00 3.09 1.69 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER3c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER4a ExonRegion 0 0.14 0.01 0.38 0.09 0.11 0.02 0.01 0.08 0.43 0.08 0.69 0.12 0.03 0.11 0.04 1.16 0.09 0.00 0.00 0.00 1.98 2.41 0.00 43 E4_Ab KnownBoundary 0 2.59 2.96 10.56 7.42 0.00 0.00 4.24 0.00 4.25 1.48 4.58 6.30 0.00 4.94 0.00 4.36 4.77 0.00 0.00 0.00 2.66 0.00 0.00 44 ER4b ExonRegion 0 10.20 2.60 77.12 24.70 5.16 4.29 1.68 17.45 36.51 23.82 81.35 19.22 2.97 27.67 1.88 36.14 8.21 0.00 0.00 0.00 85.65 86.80 0.00 45 E4_Da KnownBoundary 0 0.00 0.00 2.19 1.23 4.24 0.00 0.00 3.04 1.07 0.00 3.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 46 E4_Db KnownBoundary 0 3.56 0.00 1.80 1.53 0.00 0.00 0.00 0.00 3.21 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 47 E4b_E5a KnownJunction 0 11.11 10.06 95.83 50.34 3.82 7.50 2.03 19.59 40.51 35.89 114.71 49.52 6.82 68.04 9.77 114.76 11.97 0.00 0.00 0.00 79.45 190.80 0.00 48 E4b_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER4c ExonRegion 0 8.89 4.88 92.88 45.52 7.49 8.80 1.32 19.70 49.40 33.26 119.84 32.04 14.07 63.34 5.80 96.30 16.50 0.00 0.00 0.00 94.32 171.27 0.00 50 ER4d ExonRegion 0 0.00 0.58 0.52 0.00 0.00 2.61 0.38 0.00 2.28 0.69 1.58 0.00 0.00 0.02 0.58 0.00 0.00 0.00 0.00 0.00 0.63 1.19 0.00 51 E4_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER4e ExonRegion 0 0.20 0.19 0.06 0.00 0.00 0.06 0.00 0.16 0.23 0.11 0.06 0.77 0.36 0.25 0.19 0.74 0.00 0.00 0.00 0.00 0.14 0.19 0.00 53 Ix Intron 0 12.89 4.64 0.00 0.00 10.18 20.94 5.04 0.00 0.00 0.00 5.89 16.28 5.46 2.76 2.21 15.84 0.00 0.00 0.00 0.00 5.03 7.93 0.00 54 Ix_SR1 SilentIntronRegion 0 13.29 4.79 0.00 0.00 10.50 21.58 5.19 0.00 0.00 0.00 6.07 16.72 5.63 2.85 2.28 16.32 0.00 0.00 0.00 0.00 5.19 8.17 0.00 55 E5_Aa NovelBoundary 0 7.26 15.46 17.03 11.65 24.28 7.89 2.12 3.98 12.38 8.65 7.63 0.00 0.00 4.53 0.00 3.67 4.77 0.00 0.00 0.00 2.29 2.63 0.00 56 E5_Ab NovelBoundary 0 20.97 9.14 76.34 38.19 12.31 13.34 9.98 15.36 51.13 27.94 132.35 17.86 31.82 61.28 11.13 76.05 20.85 0.00 0.00 0.00 100.08 51.13 0.00 57 ER5a ExonRegion 0 14.50 7.42 103.67 54.45 8.70 11.09 3.84 15.90 55.64 40.08 148.06 33.99 27.20 73.09 9.43 106.55 19.15 0.00 0.00 0.00 103.68 131.37 0.00 58 ER5b ExonRegion 0 26.96 11.57 102.41 52.11 21.15 18.08 8.39 17.82 66.26 34.90 159.56 46.18 18.98 65.97 9.33 76.21 20.59 0.00 0.00 0.00 127.61 69.25 0.00 59 E5_Ac KnownBoundary 0 59.42 14.87 109.90 58.73 40.83 30.44 14.40 22.76 59.03 29.68 155.41 53.87 13.64 60.75 4.45 74.25 18.14 0.00 0.00 0.00 132.39 73.97 0.00 60 ER5c ExonRegion 0 60.05 16.77 152.47 60.18 49.04 50.01 18.94 29.66 65.91 43.23 188.01 55.41 25.19 65.20 4.34 75.07 29.15 0.00 0.00 0.00 147.38 93.34 0.00 61 E5_Da NovelBoundary 0 6.74 2.50 23.06 23.07 18.34 14.82 0.00 9.61 15.02 7.92 19.90 6.15 25.97 11.95 9.89 8.20 0.00 0.00 0.00 0.00 11.00 3.12 0.00 62 E5a_E7a KnownJunction 0 73.72 28.22 155.41 66.66 34.30 46.45 39.66 31.67 70.17 32.34 198.58 63.62 13.64 79.82 0.00 69.81 8.98 0.00 0.00 0.00 167.17 118.00 0.00 63 E5a_E8a KnownJunction 0 0.00 0.00 2.99 7.03 0.00 2.90 0.00 2.42 0.00 4.27 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 64 Ix Intron 0 8.86 5.69 17.90 14.62 19.27 14.30 4.24 9.27 14.72 8.20 10.05 37.69 18.43 14.52 2.39 11.89 2.64 0.00 0.00 0.00 8.81 8.75 0.00 65 Ix_SR1 SilentIntronRegion 0 8.90 5.72 17.97 14.68 19.34 14.36 4.25 9.31 14.78 8.24 10.09 37.84 18.50 14.58 2.40 11.94 2.65 0.00 0.00 0.00 8.84 8.79 0.00 66 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 E7_Aa NovelBoundary 0 46.90 2.70 49.67 22.21 43.63 8.29 10.07 24.64 23.55 13.46 18.22 5.70 6.82 4.89 0.00 15.12 4.39 0.00 0.00 0.00 5.50 5.45 0.00 69 ER7a ExonRegion 0 79.50 13.34 108.91 41.81 20.42 26.00 8.34 22.68 47.46 28.32 150.95 25.41 5.75 55.90 1.38 36.34 23.11 0.00 0.00 0.00 114.51 60.57 0.00 70 E7_Da KnownBoundary 0 180.18 21.84 98.02 26.07 15.37 23.40 15.85 14.70 41.61 15.12 120.61 11.25 13.64 46.56 0.00 49.22 27.58 0.00 0.00 0.00 61.10 58.91 0.00 71 ER7b ExonRegion 0 65.54 21.41 96.94 25.76 8.40 27.33 10.05 16.93 31.17 17.72 87.48 23.93 8.07 40.59 3.09 47.68 8.16 0.00 0.00 0.00 63.05 61.23 0.00 72 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 Ix Intron 0 12.70 7.63 22.83 9.65 12.71 10.09 4.30 4.51 13.34 6.41 7.73 5.60 1.93 7.24 1.02 4.46 8.25 0.00 0.00 0.00 3.86 4.17 0.00 74 Ix_SR1 SilentIntronRegion 0 12.92 7.78 23.28 9.84 12.96 10.29 4.36 4.60 13.61 6.53 7.89 5.71 1.97 7.38 1.04 4.55 8.42 0.00 0.00 0.00 3.93 4.25 0.00 75 ER8a ExonRegion 0 19.82 9.62 80.11 32.95 12.84 28.39 10.05 13.75 31.46 30.45 58.85 38.51 22.57 36.00 4.06 38.95 6.45 0.00 0.00 0.00 37.31 39.88 0.00 76 E8_Da KnownBoundary 0 13.19 15.33 87.25 54.87 19.61 13.29 7.82 19.47 60.39 23.77 110.24 80.28 87.66 22.66 0.00 84.51 25.90 0.00 0.00 0.00 62.95 25.66 0.00 77 ER8b ExonRegion 0 54.69 13.15 164.83 72.32 29.84 20.27 7.63 43.64 83.43 49.18 199.78 64.09 34.33 46.80 6.66 95.86 22.75 0.00 0.00 0.00 141.91 92.07 0.00 78 ER8c ExonRegion 0 4.94 0.00 6.94 0.45 1.78 0.00 0.00 11.52 2.88 1.15 15.46 0.00 4.69 5.41 0.00 0.00 0.00 0.00 0.00 0.00 8.81 1.39 0.00 79 ER8d ExonRegion 0 2.82 0.00 3.68 0.00 0.00 0.00 0.00 4.03 2.47 0.00 1.61 0.00 0.78 1.62 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00