Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 THAP7 Gene 0 33.14 26.19 54.89 53.21 22.89 29.92 41.77 40.52 34.89 57.64 48.76 19.12 21.52 67.07 90.66 53.18 54.62 61.20 44.63 41.95 37.55 31.52 30.75 2 399133 Transcript 0 0.43 0.00 0.60 0.02 0.00 0.42 0.89 0.00 0.00 0.22 0.29 0.00 0.00 0.04 2.50 0.00 0.00 0.00 4.11 0.46 0.00 0.00 0.00 3 471723 Transcript 0 0.11 0.05 9.27 6.81 3.83 2.13 3.18 3.60 8.25 6.45 3.60 0.00 0.63 0.92 6.59 7.63 2.94 19.28 9.64 11.04 3.57 1.52 3.25 4 466670 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 476667 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 438917 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 215742 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 471073 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 498406 Transcript 0 1.78 3.06 7.33 8.40 4.70 2.38 8.63 12.12 6.19 14.57 4.18 6.26 1.18 1.50 4.85 1.94 4.39 6.60 6.92 5.07 1.55 0.80 1.79 10 488975 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1a ExonRegion 0 0.43 0.00 0.60 0.02 0.00 0.42 0.89 0.00 0.00 0.22 0.29 0.00 0.00 0.04 2.50 0.00 0.00 0.00 4.11 0.46 0.00 0.00 0.00 12 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1b ExonRegion 0 4.23 2.03 3.68 1.36 2.68 3.67 5.30 0.00 0.00 1.15 1.93 0.00 0.00 4.87 11.61 2.97 0.00 0.00 0.00 4.26 0.00 0.00 0.00 15 E1_Da NovelBoundary 0 16.60 8.88 3.58 3.56 3.99 14.99 24.60 0.00 0.00 9.16 0.00 0.00 0.00 2.35 5.56 3.42 8.13 10.16 8.19 3.13 0.00 0.00 10.76 16 E1a_E1g KnownJunction 1 244.41 41.90 13.01 17.35 92.61 143.38 99.94 12.12 4.92 18.80 59.96 0.00 0.00 134.26 213.98 96.98 114.26 58.37 33.60 29.40 33.73 36.99 88.52 17 ER1c ExonRegion 0 32.71 4.99 3.68 4.21 4.38 20.34 12.88 0.16 0.00 3.44 5.10 0.00 0.00 17.13 37.98 17.02 10.80 2.35 0.00 6.19 6.61 2.84 5.87 18 ER1d ExonRegion 0 84.45 15.66 4.90 7.36 31.84 56.11 39.45 3.28 1.24 7.11 26.29 0.00 0.00 48.24 93.42 32.69 38.95 18.66 7.64 16.60 13.66 16.67 21.14 19 ER1e ExonRegion 1 138.00 31.72 8.09 15.13 60.47 95.72 75.73 7.09 4.57 15.37 50.84 0.00 0.00 96.15 152.90 66.87 81.20 44.53 23.25 24.47 24.90 28.13 61.96 20 ER1f ExonRegion 0 9.60 3.22 3.41 1.21 1.56 6.15 10.33 1.11 1.40 4.85 4.13 0.00 4.74 5.22 13.49 2.33 4.75 4.09 5.92 6.46 1.42 1.87 6.01 21 E1_Ag KnownBoundary 0 3.78 0.00 10.59 3.40 0.00 0.00 0.00 6.49 4.89 9.00 5.21 0.00 0.00 2.83 22.62 7.43 12.53 18.90 4.33 11.38 0.00 5.82 8.71 22 ER1g ExonRegion 1 62.18 12.41 21.96 18.75 33.94 42.97 31.71 16.34 17.65 27.32 38.80 0.00 6.83 54.79 88.36 48.19 53.57 55.39 29.11 22.19 14.23 20.99 41.30 23 E1_Db KnownBoundary 0 0.00 3.35 8.01 3.96 0.00 2.90 2.03 4.07 6.22 9.16 7.21 0.00 0.00 2.06 0.00 11.54 0.00 17.29 7.25 3.00 2.90 0.00 0.00 24 E1b_E1k KnownJunction 0 20.45 9.74 56.95 23.77 10.19 42.87 50.61 30.81 34.32 46.79 15.58 5.70 35.55 29.08 49.57 21.79 33.75 35.77 29.84 26.85 18.66 14.82 23.65 25 ER1h ExonRegion 0 0.11 0.05 9.27 6.81 3.83 2.13 3.18 3.60 8.25 6.45 3.60 0.00 0.63 0.92 6.59 7.63 2.94 19.28 9.64 11.04 3.57 1.52 3.25 26 E1_Ah KnownBoundary 0 0.00 0.00 9.76 10.42 15.03 2.16 7.86 2.55 10.27 10.74 2.00 0.00 0.00 0.00 4.45 11.62 4.68 27.53 12.05 17.51 5.07 3.06 8.02 27 ER1i ExonRegion 0 61.62 19.68 19.00 15.17 34.18 40.52 38.49 5.32 12.16 16.19 17.07 0.00 3.63 61.16 44.01 22.15 18.19 24.20 25.18 27.10 42.45 22.96 27.04 28 E1_Ai KnownBoundary 0 191.00 57.23 29.86 30.70 89.22 96.71 140.39 12.49 32.99 39.38 52.33 0.00 0.00 138.74 121.02 83.14 57.60 59.32 58.92 53.56 105.89 57.38 59.67 29 ER1j ExonRegion 1 32.84 18.97 46.13 35.79 17.15 26.33 34.73 21.82 31.22 45.31 46.76 1.80 2.91 66.26 72.52 45.27 42.22 50.90 51.71 52.40 51.16 29.25 34.24 30 E1_Aj KnownBoundary 1 20.23 18.68 69.01 65.23 7.47 12.72 22.52 25.96 44.65 63.99 40.54 0.00 0.00 63.45 96.92 86.81 21.41 122.87 82.26 79.07 43.74 32.39 72.05 31 ER1k ExonRegion 0 18.87 19.44 68.17 46.89 21.66 49.63 42.82 27.85 40.14 53.10 44.17 16.79 4.95 61.82 67.35 67.69 40.91 87.29 36.74 47.74 42.61 28.72 35.32 32 E1_Ak KnownBoundary 0 37.27 24.86 87.79 48.11 48.39 92.50 133.50 38.03 55.47 52.27 43.64 47.57 31.17 71.99 51.30 77.33 77.98 61.31 7.06 64.30 57.08 42.01 22.79 33 ER1l ExonRegion 0 46.69 36.45 90.84 57.57 25.36 38.73 83.23 60.99 55.52 80.80 99.73 29.07 29.36 122.29 171.17 89.04 110.79 70.31 71.07 68.25 64.65 56.34 49.33 34 E1_Dc KnownBoundary 0 144.54 83.80 133.05 123.03 44.23 45.43 81.48 125.36 86.14 153.41 133.93 26.11 39.12 267.17 312.88 249.25 145.30 185.05 203.77 124.19 58.94 106.67 135.47 35 ER1m ExonRegion 0 131.87 70.16 136.39 136.86 59.54 65.86 93.82 119.17 90.06 154.51 124.89 28.50 36.87 247.72 310.51 232.32 141.76 207.51 196.08 120.39 68.13 109.79 157.27 36 E1_Dd KnownBoundary 0 26.30 40.39 46.21 54.34 18.17 33.22 63.77 28.05 19.97 34.52 22.32 0.00 0.00 26.96 52.91 24.27 29.73 75.49 51.95 40.72 20.76 37.60 39.44 37 E1d_E1m KnownJunction 0 179.44 52.89 92.22 92.96 55.35 40.15 71.01 85.93 62.27 125.98 91.50 49.22 41.07 219.03 224.74 197.81 125.67 113.46 151.25 95.94 64.25 85.79 135.81 38 E1d_E1o KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER1n ExonRegion 0 23.08 34.43 57.35 76.36 26.37 34.72 57.25 47.03 49.62 60.26 25.21 7.12 3.93 35.37 43.85 31.01 31.74 102.78 43.70 53.24 25.41 29.08 25.46 40 E1e_E1n KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER1o ExonRegion 0 23.28 35.25 56.37 79.05 34.78 62.35 77.67 47.24 51.87 70.34 14.82 12.99 23.45 50.35 25.14 24.77 41.81 112.10 42.47 48.94 36.73 29.17 25.45 42 ER1p ExonRegion 0 22.75 46.13 65.98 115.36 22.37 35.47 57.45 55.40 49.66 65.10 23.10 8.68 10.02 43.23 49.55 40.25 37.99 119.96 38.93 53.39 24.04 36.70 24.16 43 E1_Am KnownBoundary 0 62.97 57.75 73.27 115.54 36.08 50.60 74.72 60.87 31.74 66.91 22.27 6.30 15.10 45.44 55.75 46.31 46.66 112.59 43.01 50.88 19.09 58.23 22.11 44 ER1q ExonRegion 0 146.11 103.53 167.17 203.69 90.32 113.73 141.04 164.45 115.91 199.32 166.36 75.50 84.34 216.46 243.91 177.70 210.97 198.84 141.61 116.01 124.45 125.96 101.91 45 E1_An KnownBoundary 0 67.79 54.14 83.38 76.48 20.46 50.88 61.56 72.99 52.23 73.63 55.22 11.70 19.48 46.68 33.25 46.06 49.37 62.22 49.13 30.04 45.78 47.33 17.50 46 E1_Ao KnownBoundary 0 71.94 49.66 56.98 78.98 95.67 110.28 87.71 61.57 34.26 76.58 59.75 18.91 33.44 53.98 41.78 104.93 74.15 57.91 63.53 71.27 40.34 68.46 39.35 47 ER1r ExonRegion 0 143.92 130.15 181.35 212.61 128.44 201.72 217.13 167.66 122.28 205.30 206.82 82.26 98.49 264.73 266.92 219.94 198.05 182.93 133.79 119.15 136.63 141.68 105.72 48 ER1s ExonRegion 0 89.62 83.67 163.02 182.44 88.17 137.47 166.51 135.81 93.54 185.63 152.53 85.80 102.15 205.61 223.61 170.03 161.70 165.60 125.32 118.91 91.40 96.50 96.84 49 E1f_E2a KnownJunction 0 195.66 112.94 212.15 231.74 69.02 106.08 113.85 144.25 103.59 207.19 157.62 88.98 143.01 203.72 235.24 265.40 250.96 261.53 198.22 157.81 107.80 134.10 172.18 50 ER2a ExonRegion 0 96.95 56.01 143.13 132.28 41.10 44.82 62.09 93.24 85.59 153.87 161.31 67.66 94.24 204.97 276.32 197.40 174.66 161.97 128.66 88.65 99.54 94.41 107.67 51 E2_Da KnownBoundary 0 112.76 57.36 115.34 131.09 45.25 49.12 57.99 72.45 65.28 115.75 98.55 71.12 102.10 197.48 210.52 126.46 144.83 112.96 66.92 85.27 77.65 55.84 51.99 52 ER2b ExonRegion 0 83.45 71.18 152.30 112.70 35.23 54.01 63.74 104.04 76.93 138.04 122.14 57.11 75.15 167.48 208.82 146.20 143.04 134.09 61.89 85.87 86.21 60.47 59.15 53 E2_Db KnownBoundary 0 111.06 139.71 180.69 105.78 65.70 92.11 99.98 124.70 93.66 158.75 139.72 68.27 83.27 178.70 212.99 228.06 104.25 177.09 71.15 91.08 96.19 83.16 106.28 54 ER2c ExonRegion 0 36.56 30.34 78.31 51.95 29.60 30.21 43.41 52.88 40.45 77.57 81.14 35.62 43.14 110.91 181.74 68.69 88.35 42.91 57.68 53.60 70.07 41.54 28.25 55 E2_Dc KnownBoundary 0 71.35 37.95 72.47 49.01 66.30 65.36 73.75 43.00 43.46 56.54 66.33 32.26 13.64 99.12 189.38 51.27 89.20 31.21 70.97 41.80 49.36 41.58 34.15 56 E2_Dd KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 5.05 0.00 4.73 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 57 E2_De KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E2_Df KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E2_Dg KnownBoundary 0 0.00 0.00 6.09 1.56 0.00 0.00 0.00 3.74 0.00 4.54 2.58 0.00 0.00 0.00 0.00 0.00 8.42 2.20 0.00 5.37 2.35 0.00 0.00 60 ER2d ExonRegion 0 27.68 20.01 43.18 23.28 29.54 38.51 33.73 21.64 19.47 34.32 36.42 20.09 11.07 65.61 95.51 18.78 38.95 16.63 46.25 19.83 23.80 6.92 5.29 61 ER2e ExonRegion 0 12.70 5.42 13.07 7.27 5.35 5.50 12.36 14.40 5.35 20.64 13.53 10.10 9.38 22.20 25.14 7.93 22.01 1.85 18.05 11.35 13.96 2.78 2.94 62 ER2f ExonRegion 0 2.12 4.07 8.58 4.09 2.68 0.00 6.62 12.10 1.24 18.35 9.66 8.66 9.38 17.87 14.51 5.94 13.20 1.85 9.56 10.64 11.02 2.08 2.94 63 ER2g ExonRegion 0 0.00 4.07 6.13 4.09 0.00 0.00 6.62 10.37 1.24 18.35 5.80 4.33 9.38 8.12 8.70 5.94 6.60 1.85 6.37 8.51 11.02 2.08 0.00 64 ER2h ExonRegion 0 1.78 3.06 7.33 8.40 4.70 2.38 8.63 12.12 6.19 14.57 4.18 6.26 1.18 1.50 4.85 1.94 4.39 6.60 6.92 5.07 1.55 0.80 1.79