Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DGCR6 Gene 0 2.75 2.54 30.39 15.36 8.33 23.27 12.85 21.42 26.42 29.96 2.32 0.36 0.47 1.20 1.17 0.74 1.44 21.68 11.83 15.40 2.28 7.16 6.28 2 413981 Transcript 0 0.00 0.00 0.54 0.00 0.00 0.00 0.39 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 3 331444 Transcript 0 0.12 0.00 2.25 0.74 0.68 7.94 3.55 0.05 1.21 1.53 0.02 0.00 0.00 0.00 0.00 0.00 0.32 0.41 3.56 2.83 0.00 0.47 3.02 4 483718 Transcript 0 1.19 1.29 11.02 5.48 4.61 10.50 4.51 10.20 12.08 10.69 2.85 0.08 0.05 0.21 0.30 0.11 0.35 6.08 4.47 4.50 0.95 1.35 1.71 5 427407 Transcript 0 0.60 1.73 9.03 8.53 0.76 3.93 5.74 1.10 2.68 3.48 0.55 0.00 0.00 1.04 0.59 0.85 0.47 11.27 2.73 8.69 0.94 0.89 1.21 6 444071 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 480608 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 477156 Transcript 0 0.99 2.28 12.17 5.11 2.17 7.61 9.64 2.58 7.08 10.49 1.69 1.04 0.00 1.28 2.80 0.95 0.45 10.16 4.32 9.26 0.69 1.75 3.26 9 436645 Transcript 0 0.00 0.00 0.04 0.00 0.00 0.35 0.13 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.07 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 1.07 0.00 0.00 0.00 0.78 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.12 0.00 2.25 0.74 0.68 7.94 3.55 0.05 1.21 1.53 0.02 0.00 0.00 0.00 0.00 0.00 0.32 0.41 3.56 2.83 0.00 0.47 3.02 13 E2_Ab KnownBoundary 0 0.00 0.00 6.62 1.80 4.33 32.42 11.13 0.00 3.24 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.57 9.60 19.18 0.00 0.00 12.72 14 E2_Ac KnownBoundary 0 3.78 0.00 0.00 7.66 0.00 32.31 16.87 2.55 1.62 2.82 0.00 0.00 0.00 0.00 0.00 3.25 3.83 0.00 9.22 0.00 0.00 14.57 7.77 15 E2_Ad KnownBoundary 0 7.11 0.00 21.50 11.55 19.61 71.10 20.67 4.44 9.03 22.56 4.63 0.00 0.00 0.00 0.00 0.00 0.00 20.44 18.26 8.88 0.00 6.25 13.06 16 ER2b ExonRegion 0 4.40 0.00 19.98 7.65 11.01 59.03 22.25 2.53 9.93 13.10 5.28 0.00 0.00 0.00 0.00 0.00 3.30 6.96 17.03 14.73 0.00 15.15 22.93 17 ER2c ExonRegion 0 9.52 0.00 27.57 9.88 13.38 71.06 24.16 3.46 13.59 21.22 8.70 0.00 0.00 0.00 0.00 0.00 3.30 11.55 19.11 10.11 0.00 19.27 18.35 18 ER2d ExonRegion 0 8.16 1.85 32.93 8.85 6.07 48.50 22.94 12.15 17.50 33.34 5.71 0.00 0.00 0.00 0.23 0.00 0.59 23.54 27.25 25.84 1.00 12.45 11.30 19 E2_Da NovelBoundary 0 3.56 5.99 68.36 21.34 0.00 11.24 0.00 24.27 45.05 57.91 49.96 0.00 0.00 2.35 0.00 0.00 12.06 17.08 0.00 26.91 54.06 2.76 4.10 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2b_E3a KnownJunction 0 3.41 0.00 58.01 17.78 0.00 10.33 1.94 19.43 21.56 39.76 7.84 0.00 0.00 0.00 4.45 0.00 4.77 17.37 12.33 0.00 0.00 2.57 3.76 22 ER2e ExonRegion 0 1.87 0.00 49.45 13.31 0.79 13.16 3.04 13.01 17.07 41.90 7.73 0.00 0.00 0.57 2.90 0.00 3.30 12.17 8.62 6.13 0.00 2.33 4.15 23 E3_Aa NovelBoundary 0 0.00 0.00 7.54 3.50 0.00 2.90 6.01 2.18 17.56 5.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 4.61 15.40 0.00 0.00 0.00 24 ER3a ExonRegion 0 2.48 0.97 70.66 28.62 4.32 27.11 15.69 33.51 41.88 56.82 7.88 0.00 2.27 2.92 3.50 0.18 1.54 46.71 33.83 39.78 4.26 24.80 24.44 25 E3_Da KnownBoundary 0 0.00 3.09 29.89 11.09 4.24 25.67 11.97 17.05 23.29 23.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.07 16.28 16.36 0.00 7.84 8.02 26 E3a_E5a KnownJunction 0 0.00 0.00 3.19 6.39 0.00 0.00 0.00 0.00 1.24 5.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.80 0.00 8.95 0.00 0.00 0.00 27 E3a_E6a KnownJunction 0 0.00 0.00 67.59 22.08 27.59 103.41 20.89 43.25 35.73 39.08 0.00 0.00 0.00 4.94 0.00 0.00 0.00 33.78 8.28 17.26 2.66 16.17 12.29 28 ER3b ExonRegion 0 1.55 3.74 20.85 10.64 3.44 33.11 17.09 16.70 19.30 25.66 2.35 0.00 0.00 5.02 0.00 7.59 0.00 14.75 6.03 13.53 11.06 18.01 7.03 29 E3_Ab KnownBoundary 0 6.74 9.74 19.22 29.90 3.90 44.58 37.98 20.00 31.39 36.69 4.84 0.00 0.00 0.00 0.00 0.00 4.58 30.34 9.51 18.15 8.71 14.57 3.84 30 ER3c ExonRegion 0 2.19 3.56 18.91 19.92 7.26 26.68 23.37 16.49 22.02 32.62 2.64 0.00 1.98 2.81 2.80 2.48 1.72 24.85 8.85 25.61 3.53 9.37 6.41 31 E3_Db NovelBoundary 0 0.00 0.00 15.05 21.08 12.56 5.68 36.88 12.86 15.97 21.14 2.21 6.00 5.84 0.00 0.00 0.00 0.00 15.59 13.46 28.00 0.00 8.82 0.00 32 E3b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 4.66 2.12 0.00 2.58 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E3b_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 I3 Intron 0 1.35 5.99 6.83 7.27 8.30 21.30 28.65 7.17 9.23 9.93 0.77 3.08 0.61 0.20 0.16 0.00 0.26 10.16 6.59 15.41 0.18 2.32 4.67 35 I3_AR1 ActiveIntronRegion 0 1.10 4.21 8.98 8.94 6.93 20.89 26.73 10.67 12.87 12.83 0.50 2.04 0.00 0.00 0.00 0.00 0.00 16.88 12.37 17.08 0.57 1.62 6.08 36 I3_SR1 SilentIntronRegion 0 1.46 6.77 5.87 6.53 8.91 21.49 29.50 5.62 7.61 8.64 0.89 3.54 0.89 0.29 0.24 0.00 0.38 7.18 4.02 14.67 0.00 2.63 4.05 37 E4_Aa NovelBoundary 0 21.63 22.69 24.69 25.30 47.45 38.16 97.86 27.77 24.77 28.10 2.63 12.60 0.00 4.94 4.45 8.29 9.54 39.84 26.64 56.95 8.71 8.76 8.37 38 E4_Da NovelBoundary 0 28.00 32.95 55.29 65.59 71.56 81.54 157.18 45.02 36.37 34.09 7.90 0.00 12.66 16.83 13.35 7.60 18.23 35.32 34.45 47.11 8.28 5.20 23.47 39 ER4a ExonRegion 0 0.00 0.00 0.04 0.00 0.00 0.35 0.13 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.07 0.00 0.00 0.00 40 I4 Intron 0 1.36 2.44 24.47 15.48 7.68 24.42 27.44 10.59 16.08 22.32 1.24 0.46 0.50 0.79 0.77 0.25 0.71 13.25 7.37 14.21 0.19 4.10 3.52 41 I4_SR1 SilentIntronRegion 0 1.36 2.44 24.50 15.49 7.68 24.44 27.46 10.60 16.09 22.34 1.24 0.46 0.50 0.79 0.78 0.25 0.71 13.26 7.37 14.22 0.19 4.11 3.52 42 E5_Aa NovelBoundary 0 3.78 0.00 26.17 21.28 0.00 21.35 21.11 23.04 13.57 19.05 1.95 0.00 0.00 4.65 0.00 0.00 0.00 33.45 0.00 21.28 2.72 0.00 7.17 43 ER5a ExonRegion 0 1.81 2.43 20.40 10.03 2.29 11.79 14.95 3.31 5.50 3.19 1.66 0.00 0.00 3.11 1.76 2.55 1.41 16.27 8.19 11.32 2.83 2.68 3.63 44 E5_Da NovelBoundary 0 3.56 0.00 32.82 17.31 8.49 24.30 14.22 16.68 12.09 22.73 0.00 0.00 0.00 0.00 0.00 0.00 4.58 15.38 0.00 22.12 8.83 5.94 6.57 45 E5a_E6a KnownJunction 0 0.00 2.76 3.49 9.16 0.00 0.00 2.25 0.00 1.30 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.74 0.00 5.82 0.00 0.00 0.00 46 E6_Ab NovelBoundary 0 27.12 14.21 137.96 58.47 40.49 127.71 107.45 59.19 64.47 97.03 58.17 5.25 0.00 17.95 4.94 16.75 40.67 69.93 66.54 65.13 68.82 36.13 41.57 47 ER6a ExonRegion 0 0.00 2.03 63.72 25.38 18.06 81.15 19.36 23.77 35.36 48.74 0.72 0.00 0.00 3.25 2.90 0.00 10.32 31.41 11.15 28.19 2.20 16.15 13.58 48 ER6b ExonRegion 0 3.32 3.17 67.18 28.94 15.68 75.72 36.81 22.93 49.84 58.27 8.50 3.26 2.87 3.14 7.24 0.86 6.99 31.83 17.26 33.26 2.63 15.46 14.62 49 E6_Da KnownBoundary 0 0.00 0.00 12.83 7.49 8.32 7.89 14.26 4.52 12.99 20.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.59 0.00 26.91 0.00 5.08 0.00 50 E6a_E7a KnownJunction 0 0.00 0.00 50.97 21.74 10.78 13.91 9.23 16.76 46.35 41.34 5.26 0.00 6.82 0.00 4.45 0.00 0.00 18.20 0.00 3.00 0.00 8.82 7.85 51 ER6c ExonRegion 0 1.99 4.55 24.34 10.23 4.35 10.56 17.15 5.16 11.58 18.02 3.39 2.07 0.00 2.57 5.60 1.91 0.90 20.33 8.63 18.51 1.37 3.51 6.53 52 E6_Db NovelBoundary 0 0.00 3.16 11.35 27.24 0.00 30.15 15.32 11.95 21.24 17.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.39 17.13 5.69 2.90 0.00 0.00 53 I6 Intron 0 1.73 0.42 19.64 9.78 6.03 10.89 13.69 11.61 13.19 18.03 1.19 0.73 0.00 0.72 0.84 0.00 0.34 15.15 7.83 17.65 0.00 2.13 2.71 54 I6_AR1 ActiveIntronRegion 0 1.74 0.42 19.71 9.81 6.05 10.94 13.75 11.65 13.25 18.10 1.19 0.73 0.00 0.73 0.84 0.00 0.34 15.21 7.86 17.72 0.00 2.14 2.72 55 ER7a ExonRegion 0 5.46 2.81 71.50 26.47 11.67 28.72 20.61 35.13 44.99 61.22 8.31 1.29 2.13 1.94 1.28 0.23 3.25 56.40 15.36 26.14 0.80 22.45 14.62 56 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 I7_AR1 ActiveIntronRegion 0 0.86 0.43 13.56 8.40 3.05 14.97 4.14 5.30 14.40 12.18 0.94 0.00 0.00 0.58 1.00 0.00 0.66 7.34 5.01 3.23 0.00 0.51 2.73 58 ER8a ExonRegion 0 4.22 2.94 56.18 31.83 10.88 23.19 15.42 40.75 46.16 61.92 5.69 0.67 0.36 2.02 0.51 1.35 3.45 51.46 19.36 26.34 3.29 14.63 8.95 59 E8_Da KnownBoundary 0 44.90 12.43 28.38 27.24 17.57 31.74 22.96 32.12 36.72 42.82 10.00 0.00 0.00 11.12 45.74 9.74 28.05 6.47 25.79 7.16 49.05 26.09 26.04 60 E8_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E8_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E8_Dd KnownBoundary 0 0.00 2.76 15.46 2.06 0.00 10.96 2.25 4.56 2.46 7.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.75 0.00 0.00 3.84 63 ER8b ExonRegion 0 4.23 2.03 40.13 10.90 8.03 24.76 6.62 24.20 36.44 36.41 0.00 0.00 0.00 0.00 0.00 0.00 3.30 8.78 27.08 9.04 8.81 4.17 8.81 64 ER8c ExonRegion 0 3.81 2.03 34.80 10.90 7.49 22.74 6.62 23.16 35.32 35.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.28 15.29 5.53 7.93 4.17 8.81 65 ER8d ExonRegion 0 2.12 2.03 30.63 10.90 2.68 18.34 7.94 20.74 29.64 32.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 12.74 4.26 4.41 4.17 5.87 66 ER8e ExonRegion 0 2.38 2.59 22.05 10.96 9.21 21.00 9.02 20.40 24.15 21.39 0.32 0.17 0.09 0.43 0.60 0.21 0.70 12.15 8.93 9.01 1.91 2.70 3.43