Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IGLL1 Gene 0 2.18 0.00 1.35 0.58 2.53 1.51 0.27 3.71 7.49 1.48 0.08 0.18 0.00 0.29 0.88 0.00 0.00 0.34 0.52 0.44 0.00 0.09 0.12 2 431576 Transcript 0 17.22 2.04 13.13 10.04 3.62 4.46 2.75 13.33 16.91 4.61 1.61 0.00 1.95 0.00 0.00 1.37 0.00 24.91 3.49 5.18 1.05 3.94 7.17 3 330377 Transcript 0 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 438703 Transcript 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 249053 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.51 0.45 0.59 0.40 0.00 0.00 2.18 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E1_Da NovelBoundary 0 36.67 3.35 23.15 19.18 7.89 12.10 6.01 23.82 23.23 9.51 4.84 0.00 0.00 0.00 0.00 0.00 0.00 41.25 0.00 15.53 0.00 8.76 21.51 8 E1a_E3a KnownJunction 0 50.60 6.12 34.36 28.70 7.89 12.10 8.26 34.54 37.44 9.51 4.84 0.00 5.84 0.00 0.00 4.10 0.00 74.74 9.22 15.53 3.15 11.82 21.51 9 Ix Intron 0 15.58 6.53 30.77 19.65 4.90 12.88 7.22 16.07 16.57 13.22 4.41 1.86 0.43 1.63 2.18 3.78 1.11 22.10 11.07 16.46 5.19 6.15 12.62 10 Ix_AR3 ActiveIntronRegion 0 11.01 6.28 28.73 13.22 6.50 14.27 9.04 11.79 14.96 11.78 5.41 1.43 0.53 2.47 2.41 3.44 2.63 14.96 10.05 17.86 7.24 5.25 13.39 11 Ix_SR1 SilentIntronRegion 0 16.95 7.01 32.45 22.59 4.53 13.42 6.81 17.07 18.05 14.31 4.56 2.11 0.46 1.53 2.02 4.30 0.63 26.01 11.59 18.43 5.09 6.93 13.67 12 Ix_AR2 ActiveIntronRegion 0 6.93 6.38 28.80 23.79 6.45 6.58 3.43 18.23 16.11 13.81 0.00 0.79 0.00 0.00 2.11 2.16 0.00 23.18 7.38 2.80 1.30 2.08 5.07 13 Ix_AR1 ActiveIntronRegion 0 22.27 3.98 25.58 18.04 2.25 5.81 5.27 22.30 11.12 9.79 0.87 1.61 0.00 0.00 2.70 1.34 0.00 16.20 11.50 0.00 0.00 4.17 3.98 14 Ix_AR2 ActiveIntronRegion 0 11.96 1.18 3.99 9.82 7.03 6.80 1.51 7.91 18.59 11.64 1.63 0.00 0.00 0.00 0.00 0.63 0.93 6.06 11.84 3.69 1.25 5.95 4.47 15 I1_SR1 SilentIntronRegion 0 2.41 4.13 7.66 16.46 4.65 5.27 5.46 6.82 11.00 9.82 0.27 0.47 0.13 0.21 0.16 0.60 0.20 8.89 13.75 11.38 0.35 1.32 2.19 16 I1_AR1 ActiveIntronRegion 0 10.64 3.09 11.49 13.29 8.76 13.30 1.70 12.16 16.08 9.60 1.13 0.00 0.00 0.00 0.00 0.00 0.00 2.89 4.52 3.59 0.26 2.68 3.44 17 ER2a ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2b ExonRegion 0 1.55 0.00 0.93 1.36 0.00 1.43 0.00 1.43 1.61 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 19 E2_Ac KnownBoundary 0 2.96 0.00 1.77 2.50 0.00 7.44 0.00 2.30 3.30 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 20 ER2c ExonRegion 0 0.49 0.00 1.18 0.44 2.15 2.22 0.00 1.20 5.12 0.50 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.71 1.92 0.43 0.00 0.00 0.59 21 E2a_E3b KnownJunction 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER3a ExonRegion 0 1.05 0.00 4.53 0.99 2.37 0.89 0.00 5.45 11.09 3.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 25 E3_Ab KnownBoundary 0 0.00 0.00 4.49 0.00 3.14 2.27 0.00 2.22 3.47 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.00 0.00 0.00 0.00 26 E3_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 7.15 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3b ExonRegion 0 2.12 0.00 3.68 0.00 5.35 0.00 0.00 5.19 16.88 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 28 ER3c ExonRegion 0 4.44 0.00 3.03 0.75 4.44 2.42 0.00 7.11 13.47 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 29 E3a_E4a KnownJunction 0 14.60 0.00 1.15 1.47 3.65 0.00 0.00 2.22 5.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER4a ExonRegion 0 4.24 0.00 0.39 0.56 2.08 1.73 0.93 8.24 14.64 2.09 0.45 0.60 0.00 0.93 4.33 0.00 0.00 0.35 0.00 1.00 0.00 0.49 0.00 31 E4_Da KnownBoundary 0 2155.86 51.77 22.32 70.92 169.61 100.74 41.78 69.21 390.10 22.86 13.79 471.15 72.07 425.04 347.61 240.88 220.38 11.32 0.00 12.14 2.90 8.14 27.32 32 ER4b ExonRegion 0 3.84 0.00 1.15 0.43 5.06 1.55 0.56 4.18 5.97 2.09 0.00 0.38 0.00 0.62 0.61 0.00 0.00 0.27 0.00 0.90 0.00 0.00 0.00 33 ER4c ExonRegion 0 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00