Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DGCR6L Gene 0 54.91 48.62 156.48 115.70 35.24 57.95 59.51 117.47 94.60 139.13 130.96 5.15 7.34 73.05 106.14 82.09 75.71 117.85 110.51 80.40 183.61 82.69 71.12 2 443409 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 248879 Transcript 0 53.04 41.62 141.96 89.28 54.82 95.79 75.77 101.13 79.58 118.58 115.10 9.12 5.54 81.19 110.88 63.62 77.81 86.02 79.26 78.84 176.12 64.95 58.30 4 405465 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 5 ER1a ExonRegion 0 62.67 26.75 19.13 14.48 36.46 87.28 77.97 9.91 6.79 13.67 86.26 0.00 11.99 41.42 71.85 48.01 67.85 5.77 104.50 27.01 119.86 41.03 58.94 6 E1_Ab KnownBoundary 0 251.08 117.74 118.36 92.10 146.69 374.84 324.73 80.26 43.60 95.39 274.23 5.70 26.30 75.87 122.26 128.77 238.71 148.78 304.39 68.65 385.37 136.80 208.63 7 ER1b ExonRegion 1 45.11 28.34 60.28 35.59 26.37 53.97 36.36 37.32 37.09 56.92 116.58 2.80 7.50 28.08 38.14 31.55 82.73 24.92 75.84 33.52 153.80 31.04 44.80 8 E1a_E2a KnownJunction 1 63.86 43.68 153.04 74.58 3.74 23.62 24.11 96.69 81.13 140.84 447.80 12.60 33.11 58.33 62.67 27.26 261.80 90.91 94.97 108.08 466.48 22.66 50.11 9 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 10 E2_Ab NovelBoundary 1 28.52 16.25 148.10 66.86 11.46 42.87 35.02 92.99 53.65 107.99 205.58 12.45 0.00 62.33 39.93 34.78 152.31 88.05 113.23 87.63 208.31 40.78 55.14 11 ER2a ExonRegion 1 40.21 33.99 162.80 78.46 5.35 32.35 24.87 104.08 75.25 137.38 396.80 11.13 23.45 66.36 84.55 37.79 245.68 106.91 125.82 106.08 419.18 42.41 57.89 12 ER2b ExonRegion 0 25.43 26.98 202.04 118.69 28.94 58.88 40.47 113.35 82.50 145.52 155.53 7.72 8.87 109.24 143.98 101.96 104.10 140.29 159.70 93.39 187.77 91.60 97.81 13 E2a_E3a KnownJunction 0 37.34 27.89 207.33 131.09 111.46 198.86 134.25 146.02 97.13 154.46 137.40 19.96 13.64 80.94 139.93 80.75 100.79 153.83 127.72 88.84 180.14 78.87 102.01 14 E2a_E4a KnownJunction 0 9.48 20.00 47.10 12.79 31.75 84.33 30.87 9.20 1.79 16.31 2.68 0.00 0.00 4.89 9.52 4.19 0.00 15.79 21.18 20.13 3.15 0.00 0.00 15 I2 Intron 0 6.09 10.09 16.51 19.50 9.77 15.08 18.54 11.01 9.72 15.60 6.14 2.98 2.10 8.10 9.26 8.23 4.82 21.22 11.35 16.08 8.18 4.16 5.36 16 I2_AR1 ActiveIntronRegion 0 2.45 7.35 4.41 10.53 3.75 17.94 12.63 3.67 6.89 9.03 6.89 4.92 2.73 3.36 5.15 7.34 5.12 16.03 10.35 16.61 6.76 4.86 4.35 17 I2_SR1 SilentIntronRegion 0 4.28 11.40 5.94 15.15 8.41 17.63 14.95 7.31 15.20 13.79 5.09 3.88 2.15 9.35 8.90 13.02 4.99 26.54 14.24 17.01 12.72 5.86 6.39 18 I2_AR3 ActiveIntronRegion 0 7.38 16.79 11.73 17.88 18.16 20.18 31.09 7.09 10.13 16.30 11.70 3.92 7.29 6.22 8.67 8.72 4.84 25.96 18.12 20.69 6.06 3.06 6.46 19 I2_SR2 SilentIntronRegion 0 4.91 12.57 0.00 0.00 14.47 17.00 33.76 0.00 0.00 0.00 2.99 8.27 3.62 11.37 4.75 0.00 2.55 1.43 2.46 8.22 3.41 1.61 4.54 20 I2_SR3 SilentIntronRegion 0 9.15 13.02 20.15 20.14 10.17 14.00 24.69 15.08 6.42 15.10 6.17 1.47 1.87 7.82 7.46 8.94 7.57 22.70 11.89 15.35 6.47 2.76 4.27 21 I2_AR5 ActiveIntronRegion 0 7.16 10.28 32.10 33.06 9.56 14.85 20.46 17.76 14.45 23.26 5.12 4.81 0.47 9.76 15.92 7.88 4.07 19.74 12.27 20.65 11.55 4.59 5.22 22 I2_SR4 SilentIntronRegion 0 8.98 6.83 29.00 33.27 11.85 17.35 8.65 15.47 9.16 17.98 5.35 0.00 2.11 10.49 7.02 5.28 1.25 21.53 9.04 13.63 9.02 5.10 7.73 23 ER3a ExonRegion 0 54.84 51.50 176.31 107.79 59.13 123.66 117.18 111.55 97.81 160.20 154.12 10.20 2.69 102.64 137.59 72.42 90.01 100.58 88.56 98.48 241.75 80.33 72.11 24 E3a_E4a KnownJunction 0 99.43 81.56 178.94 113.01 46.77 60.65 45.22 145.98 120.20 153.27 163.62 6.30 5.84 135.62 134.50 97.50 107.71 87.55 88.94 124.38 268.11 94.05 45.24 25 I3_SR2 SilentIntronRegion 0 8.41 6.93 17.07 25.11 7.02 10.88 12.54 13.27 12.14 12.47 4.60 0.00 0.00 8.12 6.81 9.85 6.13 25.74 8.66 12.72 7.48 1.81 8.23 26 ER4a ExonRegion 0 104.41 88.64 242.52 161.11 52.38 67.60 72.73 180.09 137.82 217.44 158.91 7.06 5.69 96.87 142.10 100.63 82.76 173.70 113.63 125.52 258.60 109.76 97.64 27 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5a ExonRegion 0 50.90 56.21 189.83 166.24 37.50 48.86 64.77 164.43 134.96 177.28 133.73 3.69 8.16 81.26 120.72 105.38 64.97 164.45 125.40 95.02 186.85 109.53 75.28 29 E5_Da KnownBoundary 0 52.01 52.62 142.54 104.95 28.52 46.22 38.64 119.36 83.33 150.99 70.33 6.30 0.00 28.72 65.64 73.48 41.05 165.65 62.03 65.39 99.96 84.20 27.49 30 ER5b ExonRegion 0 57.13 36.84 49.79 36.13 6.77 12.49 17.88 39.16 28.61 50.14 51.28 6.05 3.68 14.35 34.48 42.41 37.29 42.20 52.34 23.79 74.63 31.80 29.10 31 ER5c ExonRegion 1 20.56 5.52 5.25 5.26 1.91 0.00 6.43 0.99 3.18 6.39 5.25 0.00 0.00 5.57 31.50 3.82 12.73 2.11 11.83 3.65 14.48 6.55 13.84