Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CRYBB2P1 Gene 0 43.73 57.26 52.07 66.19 42.52 32.49 64.69 43.25 50.10 44.98 48.25 32.26 29.85 36.53 38.98 42.22 41.23 85.07 54.10 76.22 33.61 19.80 29.01 2 382734 Transcript 1 50.90 57.12 67.79 72.18 38.61 30.76 65.04 46.96 52.22 46.37 89.08 28.49 22.95 63.32 54.38 58.41 66.35 86.40 101.69 85.40 54.07 22.74 52.30 3 415709 Transcript 0 30.51 28.89 39.51 33.69 12.14 20.59 24.78 26.05 30.61 19.29 41.56 7.25 10.00 35.98 32.58 35.97 36.53 125.25 26.94 52.65 19.06 25.88 28.45 4 354451 Transcript 0 10.47 10.38 7.24 15.44 15.93 5.55 19.53 10.31 10.56 10.91 3.09 4.27 6.18 4.40 5.28 8.53 4.50 16.25 13.49 12.38 7.65 5.49 7.12 5 IG43 Intergenic 0 3.09 7.90 9.35 22.45 5.76 3.94 14.41 4.74 6.77 9.07 0.17 0.27 0.30 0.09 0.14 0.19 0.41 8.01 12.84 18.02 0.08 0.02 0.09 6 IG43_AR4 ActiveIntergenicRegion 0 0.45 2.62 7.01 8.17 3.83 5.43 11.20 3.82 2.37 5.37 0.00 0.00 0.00 0.03 0.00 0.00 0.00 8.17 17.57 21.16 0.00 0.00 0.00 7 IG43_AR5 ActiveIntergenicRegion 0 3.61 13.46 11.74 32.65 2.59 5.36 27.94 8.38 15.19 24.87 0.00 0.00 0.00 0.00 0.00 0.00 1.49 21.29 33.11 50.10 0.00 0.00 0.00 8 IG43_SR5 SilentIntergenicRegion 0 3.14 9.69 9.58 25.07 6.29 3.99 19.18 5.46 7.84 10.55 0.07 0.08 0.35 0.04 0.11 0.08 0.42 6.96 14.33 24.30 0.05 0.04 0.06 9 IG43_SR6 SilentIntergenicRegion 0 3.81 12.55 14.07 43.14 8.58 3.51 17.49 7.20 8.59 9.70 0.22 0.40 0.00 0.08 0.39 0.84 0.56 8.42 14.83 21.18 0.00 0.00 0.00 10 IG43_AR8 ActiveIntergenicRegion 0 2.56 14.08 21.27 47.77 12.06 5.04 19.06 5.95 17.40 11.83 1.06 0.78 0.00 0.42 0.54 0.98 1.81 22.21 23.46 20.35 0.00 0.00 0.00 11 IG43_SR7 SilentIntergenicRegion 0 3.39 13.37 19.84 39.04 3.39 5.41 14.84 7.61 10.58 12.23 0.30 0.00 0.00 0.00 0.00 1.40 0.00 21.69 29.06 32.45 0.35 0.00 0.00 12 IG43_AR9 ActiveIntergenicRegion 0 5.30 15.48 25.44 39.76 12.32 10.20 25.93 12.50 14.52 10.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.22 20.95 32.64 0.93 0.00 0.00 13 IG43_SR8 SilentIntergenicRegion 0 9.09 16.60 26.05 61.16 13.83 10.55 30.03 10.10 13.88 23.86 0.53 1.18 1.43 0.41 0.24 0.41 1.36 22.57 28.78 35.14 0.42 0.00 0.16 14 IG43_AR10 ActiveIntergenicRegion 0 9.15 14.98 32.92 58.04 21.98 11.40 23.05 11.41 15.66 20.36 2.57 0.95 0.00 0.71 0.83 0.79 0.88 23.64 45.74 26.89 0.00 0.00 0.00 15 IG43_SR9 SilentIntergenicRegion 0 11.72 10.72 8.31 15.95 13.81 11.07 18.38 4.43 4.38 9.42 0.00 0.30 0.00 0.00 0.22 0.00 0.28 5.12 18.74 17.10 0.00 0.00 0.00 16 IG43_AR13 ActiveIntergenicRegion 0 2.76 10.49 13.20 34.33 12.36 12.41 9.71 6.83 15.29 14.20 0.00 0.00 0.00 0.00 1.45 0.93 0.00 29.53 17.02 28.83 0.00 0.00 0.00 17 IG43_SR11 SilentIntergenicRegion 0 0.41 5.78 3.09 11.10 3.70 10.37 8.81 0.83 6.53 11.06 0.00 0.00 0.00 0.00 0.00 0.55 0.00 7.79 11.65 18.94 0.00 0.00 0.00 18 ER1a ExonRegion 1 54.27 58.49 38.21 46.11 32.03 90.69 72.91 24.67 36.24 29.10 79.96 0.00 2.89 67.01 44.37 69.23 73.19 92.51 95.01 66.90 64.61 35.25 72.45 19 E1_Da NovelBoundary 0 6.67 28.74 11.47 9.16 0.00 0.00 0.00 14.75 4.66 8.78 2.05 0.00 0.00 0.00 0.00 0.00 8.79 6.55 8.75 27.55 0.00 0.00 0.00 20 E1a_E2a KnownJunction 1 6.74 3.22 45.00 35.66 0.00 0.00 13.65 21.19 27.03 16.17 111.08 0.00 6.01 82.11 32.14 43.49 83.68 73.17 197.46 90.51 76.54 30.07 101.58 21 E1a_E3a NovelJunction 0 0.00 0.00 6.24 10.82 0.00 0.00 2.12 0.00 3.56 3.04 7.48 0.00 0.00 21.48 4.45 0.00 3.65 7.63 0.00 0.00 3.15 5.51 0.00 22 I1_SR1 SilentIntronRegion 0 5.18 17.02 7.36 16.50 6.05 6.16 14.80 8.97 8.09 12.21 1.53 1.84 2.78 1.14 1.48 2.90 2.62 8.19 13.81 19.10 1.35 0.51 0.90 23 E2_Ab NovelBoundary 0 34.97 34.93 38.94 51.31 17.83 72.06 77.37 34.13 41.55 46.34 32.43 0.00 5.84 26.49 28.93 24.10 28.42 96.38 49.98 74.59 21.25 40.90 41.74 24 ER2a ExonRegion 1 13.30 14.24 38.34 49.06 11.47 41.92 31.21 25.43 29.64 23.92 113.76 0.00 14.74 89.33 35.64 41.61 82.99 99.78 152.90 105.47 77.44 44.35 82.65 25 ER2b ExonRegion 1 33.07 55.86 79.49 125.54 44.90 108.37 79.18 79.61 91.96 78.76 106.25 13.52 16.53 76.84 73.08 87.21 77.84 255.38 123.97 164.18 73.99 63.10 73.30 26 E2a_E3a KnownJunction 0 47.34 46.44 137.78 155.36 25.04 117.49 71.37 99.52 113.08 96.22 52.33 5.55 27.43 44.79 75.53 47.59 70.97 213.73 91.39 130.97 63.26 40.23 12.63 27 ER3a ExonRegion 1 44.25 72.04 134.19 167.44 37.83 75.46 97.24 108.99 136.80 119.56 121.46 26.10 36.01 88.29 78.07 71.12 86.28 241.69 84.42 176.88 91.00 59.62 39.55 28 E3a_E4a KnownJunction 0 79.79 155.70 139.26 169.08 81.75 72.40 94.07 108.56 153.99 148.06 154.51 55.97 84.25 103.48 161.44 108.01 139.50 354.34 154.08 226.59 69.75 85.30 58.90 29 ER4a ExonRegion 0 70.71 95.40 175.26 202.99 64.67 61.51 109.40 108.48 148.35 138.94 135.73 51.22 73.82 93.52 123.80 86.55 115.60 288.54 114.10 184.96 71.89 55.46 39.97 30 E4_Da KnownBoundary 0 24.67 36.11 56.21 44.38 8.40 29.41 20.71 37.87 46.12 19.10 39.01 12.45 25.00 51.15 13.35 42.30 55.26 154.21 47.62 70.44 14.02 50.95 47.63 31 E4a_E5a KnownJunction 0 73.79 72.22 111.32 129.05 55.26 10.85 87.22 87.45 82.41 84.80 95.50 45.76 35.22 58.80 89.50 70.15 63.49 116.65 50.92 90.44 46.33 11.02 16.99 32 E4a_E6a KnownJunction 0 3.63 0.00 6.42 8.76 0.00 0.00 12.41 13.72 4.22 4.81 0.00 0.00 0.00 2.12 0.00 3.85 0.00 19.03 20.61 2.43 8.40 3.12 0.00 33 ER4b ExonRegion 0 30.51 28.89 39.51 33.69 12.14 20.59 24.78 26.05 30.61 19.29 41.56 7.25 10.00 35.98 32.58 35.97 36.53 125.25 26.94 52.65 19.06 25.88 28.45 34 E4_Db NovelBoundary 0 50.75 88.41 47.46 28.37 11.54 7.95 54.54 24.60 33.04 19.90 42.80 6.30 12.99 35.08 37.09 63.91 44.41 96.42 35.48 80.41 10.56 5.39 16.13 35 I4 Intron 1 35.86 45.46 32.85 28.38 24.77 8.33 36.54 14.85 18.97 17.31 35.79 19.70 17.88 26.38 26.11 26.99 19.03 32.28 30.61 44.59 7.69 5.09 6.15 36 I4_SR1 SilentIntronRegion 1 35.98 45.62 32.96 28.48 24.85 8.36 36.66 14.90 19.03 17.37 35.91 19.77 17.94 26.47 26.20 27.09 19.09 32.39 30.72 44.75 7.72 5.11 6.18 37 E5_Aa NovelBoundary 0 594.77 459.13 753.43 921.93 542.11 340.37 991.06 710.50 860.21 604.53 154.93 60.62 146.74 37.26 67.12 232.08 371.11 595.69 371.02 657.64 193.61 120.08 179.18 38 ER5a ExonRegion 0 68.80 94.55 76.64 77.88 67.14 21.51 86.40 54.52 63.22 55.41 69.77 68.18 47.66 45.35 51.51 50.77 45.05 63.27 63.35 93.76 28.79 14.63 18.16 39 E5_Da NovelBoundary 0 38.97 33.81 29.92 34.86 16.04 2.90 52.47 15.40 26.22 19.85 2.47 14.40 8.28 9.59 8.90 28.80 4.11 29.47 31.44 46.28 10.63 5.88 8.28 40 I5 Intron 0 9.99 24.93 15.25 21.16 12.97 4.09 22.17 13.89 19.53 12.03 2.40 5.08 5.32 3.32 4.75 8.05 4.45 34.56 17.90 28.33 8.72 1.91 6.33 41 I5_SR1 SilentIntronRegion 0 7.61 13.02 9.63 9.01 5.41 3.43 15.92 6.47 9.53 5.73 2.00 3.84 2.72 5.16 5.97 5.71 3.58 27.47 14.60 27.05 7.82 0.51 4.34 42 I5_AR2 ActiveIntronRegion 0 4.68 24.72 1.35 13.13 9.15 0.00 14.22 0.73 6.05 3.38 2.65 3.65 13.58 4.27 0.15 2.03 4.00 13.52 6.54 30.46 3.13 3.40 0.93 43 I5_SR2 SilentIntronRegion 0 12.76 38.49 22.84 32.77 21.04 8.99 36.03 18.57 26.08 18.96 6.12 10.10 10.70 8.18 8.43 14.79 8.11 64.87 33.72 56.87 16.59 4.37 11.00 44 I5_AR3 ActiveIntronRegion 0 8.88 32.49 18.27 32.44 16.84 6.81 26.28 18.29 24.95 16.55 4.99 1.64 6.37 8.88 9.61 14.39 4.79 92.95 21.08 53.91 18.51 4.71 8.53 45 I5_AR4 ActiveIntronRegion 0 23.43 76.29 36.27 42.93 31.79 9.72 34.92 20.40 28.28 19.15 3.76 6.60 5.81 5.75 10.81 11.36 4.87 44.09 27.15 45.12 11.68 2.52 8.08 46 I5_SR5 SilentIntronRegion 0 8.20 16.68 11.15 15.74 8.96 1.66 16.10 12.17 17.13 9.20 0.72 3.14 3.27 0.78 2.55 5.09 2.99 20.43 10.98 14.76 5.08 0.90 4.42 47 E6_Aa NovelBoundary 0 3.04 21.58 3.08 21.78 11.46 0.00 21.42 2.42 7.29 0.00 0.00 0.00 6.33 2.35 9.64 0.00 0.00 14.92 4.80 17.26 2.47 0.00 0.00 48 ER6a ExonRegion 0 9.78 20.20 11.37 39.40 23.90 5.74 26.36 12.25 19.36 18.09 2.92 5.36 2.46 2.78 8.01 11.74 5.26 28.80 17.70 19.93 16.62 2.40 5.71 49 E6_Da NovelBoundary 0 10.59 26.25 14.25 49.18 12.39 5.56 33.17 19.51 24.48 20.58 5.16 0.00 0.00 7.42 0.00 0.00 12.72 39.80 25.88 20.20 16.25 2.88 7.60 50 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 20.20 4.83 12.59 6.61 2.49 7.58 2.68 0.00 0.00 4.89 4.45 0.00 0.00 1.66 4.80 2.88 0.00 0.00 0.00 51 I6 Intron 0 10.27 25.85 9.93 32.69 17.30 2.56 22.96 11.92 18.93 12.06 2.27 3.23 4.44 1.64 2.92 10.48 4.61 25.18 15.21 10.94 7.61 1.84 5.18 52 I6_SR1 SilentIntronRegion 0 10.29 25.93 9.96 32.78 17.35 2.57 23.03 11.96 18.99 12.09 2.28 3.24 4.45 1.65 2.93 10.51 4.62 25.25 15.25 10.98 7.63 1.84 5.19 53 E7_Aa NovelBoundary 0 13.41 29.47 3.64 51.41 16.47 0.00 28.18 24.27 12.96 16.79 2.26 6.30 6.49 0.00 0.00 8.46 0.00 4.02 27.11 21.03 3.03 0.00 11.44 54 ER7a ExonRegion 0 6.04 1.85 2.85 2.20 11.33 3.02 10.01 2.75 4.90 6.61 2.05 0.00 2.35 2.29 2.22 4.46 0.00 1.85 2.34 2.75 0.00 6.80 2.94 55 E7_Da NovelBoundary 0 14.15 44.27 8.31 19.21 24.70 14.37 40.32 12.49 18.72 20.50 0.00 0.00 0.00 2.47 5.19 0.00 0.00 1.99 8.38 15.66 0.00 0.00 0.00 56 E7a_E8a KnownJunction 0 14.00 6.05 5.06 5.26 8.06 0.00 6.09 0.00 7.78 3.09 2.42 0.00 6.82 2.12 0.00 7.52 0.00 3.36 3.67 3.26 0.00 11.94 7.85 57 I7 Intron 0 4.14 22.03 6.87 21.69 14.09 2.48 21.51 16.27 11.91 8.49 0.87 5.33 8.26 0.17 0.67 3.58 2.98 8.99 10.06 12.16 5.30 0.63 0.88 58 I7_SR1 SilentIntronRegion 0 4.46 23.78 7.41 23.42 15.21 2.68 23.22 17.57 12.85 9.16 0.94 5.75 8.92 0.19 0.72 3.86 3.22 9.71 10.86 13.13 5.72 0.68 0.95 59 E8_Aa NovelBoundary 1 7.48 24.73 7.75 22.24 7.64 8.69 28.66 23.82 13.66 8.19 0.00 26.11 7.63 0.00 0.00 0.00 0.00 28.56 20.52 17.58 7.97 0.00 0.00 60 ER8a ExonRegion 1 29.36 34.16 17.78 37.00 32.11 19.72 49.74 26.51 24.57 25.29 8.45 20.28 25.47 12.21 16.99 23.63 21.71 42.78 31.83 43.01 20.90 8.68 26.24 61 IG44 Intergenic 0 5.27 10.33 5.83 16.56 9.74 2.29 9.77 7.91 7.52 6.97 0.35 2.01 2.08 0.50 0.70 1.42 0.65 8.64 6.15 7.09 2.79 0.49 1.81 62 IG44_AR1 ActiveIntergenicRegion 0 38.03 30.45 22.17 61.38 30.70 13.08 31.67 36.86 31.04 27.31 1.88 15.02 23.40 2.78 2.28 9.04 7.07 57.29 20.19 29.58 19.49 4.04 12.71 63 IG44_SR2 SilentIntergenicRegion 0 5.56 18.05 10.05 26.57 11.31 2.14 15.70 12.96 10.92 11.16 1.10 5.77 5.36 2.01 2.24 5.00 2.55 19.68 11.62 12.58 9.07 0.88 4.26 64 IG44_AR2 ActiveIntergenicRegion 0 11.45 42.81 19.90 55.59 33.26 5.30 30.50 22.99 21.20 20.87 0.92 8.93 13.48 3.67 2.41 5.14 1.23 18.56 14.92 19.43 12.49 1.12 3.16 65 IG44_AR3 ActiveIntergenicRegion 0 9.94 11.22 22.67 48.82 18.37 2.24 14.16 23.45 21.41 25.21 1.09 4.67 9.99 1.55 1.93 5.87 1.86 23.28 7.48 13.77 7.86 1.57 3.04 66 IG44_AR4 ActiveIntergenicRegion 0 23.32 40.31 16.23 35.64 12.19 1.95 14.83 16.61 11.79 12.80 0.68 1.94 0.91 0.87 1.44 3.30 1.56 18.80 3.71 13.93 5.13 0.49 2.43 67 IG44_SR5 SilentIntergenicRegion 0 32.21 27.29 35.87 64.46 23.20 5.04 16.82 27.66 25.47 21.97 2.21 4.96 6.20 3.03 3.70 10.52 1.36 52.78 16.93 16.95 18.68 0.00 3.01 68 IG44_AR5 ActiveIntergenicRegion 0 25.25 25.83 31.85 54.20 22.65 5.97 30.24 24.28 20.15 19.29 3.79 3.75 2.54 1.54 4.70 4.53 3.51 37.48 15.50 17.34 11.29 0.89 5.04 69 IG44_AR8 ActiveIntergenicRegion 0 9.31 13.44 11.11 18.95 19.44 3.64 15.18 14.37 9.10 11.40 0.00 4.87 1.07 0.60 0.85 0.00 1.14 13.04 12.22 10.99 2.45 0.65 1.92 70 IG44_SR9 SilentIntergenicRegion 0 10.44 12.86 5.90 19.15 19.31 3.66 16.87 14.08 6.63 11.89 0.86 0.90 0.86 0.00 0.00 1.32 1.84 13.31 23.99 10.74 4.36 0.51 4.10 71 IG44_AR9 ActiveIntergenicRegion 0 0.81 7.46 3.71 11.87 9.80 3.49 16.31 3.59 8.41 5.88 0.00 1.36 2.07 0.00 0.52 0.38 0.84 3.97 6.87 11.06 1.68 0.00 0.37