Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPM1F Gene 0 43.82 28.15 71.51 47.25 37.35 39.10 42.58 47.92 58.08 57.20 34.68 9.76 12.38 43.64 35.31 22.42 24.17 49.96 40.77 30.94 92.06 60.55 62.42 2 263212 Transcript 0 14.11 2.44 1.55 3.54 2.68 17.60 11.21 2.19 2.88 5.66 11.21 0.00 0.00 16.46 15.09 5.94 15.18 11.33 11.89 12.06 32.76 16.25 33.28 3 397495 Transcript 0 11.96 8.64 22.61 18.04 7.18 7.62 12.92 11.28 16.26 12.08 3.41 2.12 3.49 11.32 13.56 8.48 5.78 14.77 10.95 9.38 5.84 6.96 7.13 4 497072 Transcript 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 406981 Transcript 0 3.35 2.58 4.13 2.60 1.14 0.01 2.54 2.63 2.85 0.62 1.02 0.82 0.10 1.36 2.91 0.57 0.00 4.11 3.03 1.39 0.64 0.06 0.31 6 445205 Transcript 0 0.00 0.00 0.00 1.25 0.00 1.07 2.03 1.55 1.13 1.05 0.00 0.00 2.35 0.35 0.00 0.00 2.03 0.00 1.77 3.78 1.35 1.92 1.80 7 407142 Transcript 0 0.34 0.58 1.56 0.59 0.09 0.29 1.16 0.83 2.36 1.05 0.19 0.00 0.00 0.18 0.64 0.57 0.67 0.97 0.31 0.61 1.04 0.27 1.30 8 424647 Transcript 0 0.00 0.00 1.80 0.00 0.00 2.90 2.25 4.11 6.42 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 486259 Transcript 0 0.63 3.05 1.64 2.22 0.80 3.67 2.78 2.57 2.21 0.85 0.19 0.71 0.77 0.13 0.20 0.59 0.33 3.03 0.32 2.34 1.10 0.63 1.76 10 484588 Transcript 0 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 496143 Transcript 0 1.05 1.51 3.60 1.97 0.00 5.45 1.30 2.51 0.91 0.42 0.96 0.00 0.00 0.95 2.24 1.47 2.45 3.41 3.14 1.58 3.19 0.46 2.91 12 ER1a ExonRegion 0 14.11 2.44 1.55 3.54 2.68 17.60 11.21 2.19 2.88 5.66 11.21 0.00 0.00 16.46 15.09 5.94 15.18 11.33 11.89 12.06 32.76 16.25 33.28 13 ER1b ExonRegion 0 83.18 17.29 11.03 18.94 14.18 66.02 62.36 15.21 20.13 25.23 53.93 0.00 0.00 72.92 78.62 33.29 69.32 46.19 58.61 47.66 142.36 56.26 145.36 14 E1a_E1e KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E2a KnownJunction 0 144.84 29.67 34.83 48.75 34.30 91.82 126.53 39.68 63.92 60.82 73.49 0.00 12.01 54.33 50.19 52.29 88.64 120.09 64.85 65.90 179.28 78.62 200.26 16 ER1c ExonRegion 0 101.96 25.81 15.85 21.62 22.51 80.88 87.66 22.77 30.58 30.97 69.72 0.00 0.32 96.72 88.14 41.92 73.99 57.98 69.53 56.13 177.13 75.65 177.62 17 ER1d ExonRegion 0 1.77 0.88 3.26 0.99 0.57 0.03 1.41 2.99 1.28 1.52 0.09 0.28 0.31 0.83 2.03 0.71 0.00 3.04 1.25 1.57 1.43 0.17 0.93 18 E1_Ae KnownBoundary 0 13.48 3.35 15.20 6.03 12.05 0.00 4.20 16.55 10.27 2.44 5.11 0.00 0.00 2.47 0.00 0.00 0.00 10.11 9.60 5.37 5.31 0.00 0.00 19 ER1e ExonRegion 0 10.14 6.04 7.50 6.75 4.87 2.75 6.80 7.44 5.66 4.38 2.23 1.42 0.00 1.78 2.70 1.72 0.00 3.96 1.34 3.12 2.13 1.66 1.17 20 E1_Db KnownBoundary 0 13.78 5.92 15.40 12.35 6.45 0.00 3.93 10.68 8.56 1.37 9.79 0.00 0.00 4.94 5.69 4.36 0.00 4.85 0.00 0.00 3.09 0.00 0.00 21 ER1f ExonRegion 0 8.29 6.86 9.12 6.81 2.84 0.00 6.21 4.89 7.28 0.35 2.96 2.19 0.00 3.25 6.71 1.00 0.00 9.28 7.83 2.61 0.50 0.00 0.00 22 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER2a ExonRegion 0 11.04 3.13 32.69 30.22 7.09 13.59 11.60 30.08 46.28 44.84 42.44 1.37 9.77 52.12 45.81 24.40 36.93 59.57 40.95 36.47 125.12 48.75 69.64 24 E2a_E4a KnownJunction 0 9.56 15.66 51.83 22.01 49.32 72.63 43.01 37.62 75.81 71.78 67.75 6.00 32.30 52.09 27.32 23.24 54.98 73.12 55.25 38.86 124.67 60.99 49.25 25 E3_Aa NovelBoundary 0 3.04 5.06 11.47 14.18 4.07 0.00 0.00 9.90 11.28 25.38 2.68 0.00 0.00 2.18 0.00 0.00 4.77 8.54 9.13 21.41 2.59 3.00 12.63 26 ER3a ExonRegion 0 0.00 0.00 0.00 2.50 0.00 2.14 4.07 3.10 2.26 2.10 0.00 0.00 4.69 0.70 0.00 0.00 4.06 0.00 3.53 7.56 2.71 3.84 3.61 27 E3_Da NovelBoundary 0 12.97 9.41 9.37 23.91 4.07 7.04 0.00 11.01 11.60 21.68 0.00 0.00 0.00 0.00 0.00 8.37 0.00 14.14 4.33 22.24 5.93 2.63 4.27 28 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E4_Aa NovelBoundary 0 9.63 0.00 4.94 5.49 4.16 11.07 1.77 13.10 13.60 10.58 0.00 0.00 0.00 0.00 0.00 8.29 3.74 15.84 8.38 15.40 2.78 0.00 3.33 30 ER4a ExonRegion 0 19.42 18.17 60.35 38.34 11.80 43.22 44.45 40.60 70.46 74.63 46.75 6.86 19.83 70.61 55.96 36.66 47.48 61.29 50.26 48.09 132.90 72.62 57.29 31 E4_Da NovelBoundary 0 3.78 9.08 7.18 9.19 0.00 16.01 14.18 10.19 15.34 17.03 0.00 6.30 6.82 0.00 0.00 11.96 0.00 17.62 3.76 26.97 5.62 11.57 11.01 32 E4a_E7a KnownJunction 0 50.45 21.71 87.28 65.93 8.40 15.73 15.72 56.15 105.29 119.19 87.02 35.56 34.58 118.08 43.39 68.02 73.87 81.37 78.21 58.74 182.18 116.65 149.30 33 E5_Aa NovelBoundary 0 0.00 5.79 2.93 1.73 10.70 2.33 2.25 2.46 6.63 7.28 0.00 0.00 0.00 0.00 0.00 7.35 0.00 12.81 16.38 17.58 5.50 8.21 3.59 34 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.61 35 ER5b ExonRegion 0 0.00 0.00 0.00 0.03 0.00 1.47 4.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.87 36 E5_Ac KnownBoundary 0 3.70 3.03 4.88 3.66 3.40 16.01 8.26 6.33 6.28 0.00 2.68 0.00 0.00 0.00 4.45 0.00 0.00 7.21 4.80 18.34 8.90 0.00 3.93 37 ER5c ExonRegion 0 0.00 0.65 0.95 1.27 0.42 0.20 2.46 0.63 3.01 0.47 0.25 0.00 0.00 0.18 0.32 0.00 1.91 3.44 0.99 2.65 0.42 0.00 0.22 38 E5_Da KnownBoundary 0 0.00 0.00 5.50 2.70 0.00 0.00 6.49 0.00 7.35 1.34 0.00 0.00 0.00 0.00 0.00 0.00 3.93 6.22 0.00 0.00 2.59 0.00 4.35 39 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E5a_E7a KnownJunction 0 0.00 0.00 1.80 0.00 0.00 2.90 2.25 4.11 6.42 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER5d ExonRegion 0 1.02 1.75 4.68 1.77 0.26 0.88 2.31 2.48 5.28 2.04 0.56 0.00 0.00 0.54 1.93 1.71 2.00 2.92 0.92 1.84 3.13 0.80 1.30 42 E5b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER6a ExonRegion 0 1.27 6.10 3.29 4.43 1.61 7.34 5.56 5.14 4.42 1.71 0.39 1.43 1.54 0.27 0.41 1.19 0.66 6.06 0.64 4.68 2.20 1.25 3.52 44 E6_Da NovelBoundary 0 0.00 6.25 0.00 16.75 0.00 0.00 7.64 1.68 7.73 3.95 0.00 6.30 0.00 0.00 0.00 0.00 0.00 9.99 0.00 5.31 2.35 6.00 0.00 45 ER7a ExonRegion 0 31.11 20.94 59.81 39.28 13.55 31.21 22.74 42.53 81.68 70.72 64.03 13.16 35.86 83.01 53.05 37.73 38.11 67.16 49.22 38.56 161.20 76.79 73.47 46 E7a_E8a KnownJunction 0 53.34 21.77 70.90 52.04 55.43 53.15 73.88 45.80 113.40 99.58 89.29 12.60 40.09 94.36 76.77 33.32 47.50 80.71 21.93 37.26 151.97 96.81 124.29 47 ER8a ExonRegion 0 19.64 25.29 70.63 47.35 25.27 40.84 41.86 53.02 93.67 81.41 76.57 9.83 27.35 89.46 59.59 42.30 40.75 82.21 59.53 51.28 176.11 78.28 101.37 48 E8a_E9a KnownJunction 0 14.00 16.05 67.74 48.18 20.12 30.55 44.07 46.54 112.56 121.04 30.74 24.31 32.30 65.16 32.88 19.57 53.58 81.33 41.51 34.77 115.03 66.56 75.46 49 ER9a ExonRegion 0 32.81 27.53 57.40 37.64 19.86 49.58 46.70 41.82 76.20 87.12 62.45 14.82 18.40 66.46 55.12 28.69 41.01 54.08 36.88 54.66 137.82 79.01 96.91 50 E9_Ab KnownBoundary 0 44.67 36.97 82.91 65.09 31.75 66.04 66.91 60.87 94.67 115.96 80.44 25.21 19.32 84.00 88.51 69.81 68.63 108.94 55.53 73.70 175.57 80.34 125.48 51 ER9b ExonRegion 0 33.04 33.55 77.40 45.43 27.35 57.97 53.47 50.51 89.96 103.09 75.17 18.52 13.03 79.58 79.95 50.03 55.20 81.92 47.60 61.47 160.38 81.26 109.47 52 ER9c ExonRegion 0 16.59 19.58 69.54 43.67 25.95 41.10 45.69 57.25 86.95 99.59 82.86 11.30 10.04 88.79 79.90 49.66 44.99 86.57 56.48 47.47 175.44 74.21 99.67 53 E9_Db NovelBoundary 0 0.00 5.99 9.05 10.26 0.00 0.00 8.17 0.00 8.54 5.72 0.00 12.30 0.00 0.00 0.00 4.27 9.44 24.08 4.61 6.39 0.00 2.76 0.00 54 E9b_E11a KnownJunction 0 9.78 30.26 72.38 56.20 15.45 37.14 63.59 55.74 96.70 102.96 99.45 6.15 12.66 107.07 111.13 40.42 48.71 120.92 77.37 45.76 189.41 110.65 85.62 55 Ix Intron 0 6.82 7.01 21.40 12.76 5.05 6.27 6.81 7.88 12.34 10.29 3.08 0.98 1.63 3.44 5.22 5.13 2.69 14.59 6.12 7.69 13.12 4.41 6.40 56 Ix_SR1 SilentIntronRegion 0 6.82 7.02 21.41 12.77 5.05 6.27 6.81 7.89 12.35 10.30 3.08 0.98 1.64 3.44 5.22 5.13 2.69 14.60 6.12 7.69 13.12 4.41 6.41 57 E10_Aa NovelBoundary 0 14.45 6.45 18.18 16.45 3.14 12.49 9.89 13.47 14.55 15.45 7.16 0.00 6.82 6.00 6.06 0.00 4.77 17.87 28.71 5.69 0.00 10.53 16.30 58 ER10a ExonRegion 0 2.10 3.02 7.20 3.94 0.00 10.90 2.61 5.02 1.82 0.85 1.91 0.00 0.00 1.89 4.48 2.94 4.90 6.82 6.28 3.16 6.38 0.91 5.82 59 E10_Da NovelBoundary 0 0.00 3.29 15.37 12.62 7.47 2.67 20.14 14.62 11.00 4.46 5.16 0.00 0.00 2.47 4.70 3.42 4.49 9.33 0.00 0.00 20.51 5.08 11.44 60 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 Ix Intron 0 11.99 5.59 23.52 12.90 5.97 7.56 9.55 9.29 12.01 15.26 3.32 0.00 0.00 2.99 7.18 7.15 5.10 10.25 4.92 1.83 10.97 7.16 6.05 62 Ix_SR1 SilentIntronRegion 0 12.07 5.63 23.68 12.99 6.01 7.61 9.61 9.35 12.09 15.36 3.34 0.00 0.00 3.01 7.23 7.19 5.14 10.32 4.96 1.84 11.04 7.20 6.09 63 E11_Aa NovelBoundary 0 6.45 5.72 19.07 21.71 0.00 5.28 15.68 8.63 10.24 11.93 2.21 0.00 0.00 4.94 8.90 0.00 0.00 9.99 12.71 0.00 15.14 2.88 4.01 64 ER11a ExonRegion 0 35.55 23.10 94.78 60.43 26.76 52.13 36.18 59.59 99.60 101.05 97.32 20.22 25.99 99.90 92.93 45.91 61.52 118.92 81.26 40.52 199.60 99.79 123.81 65 E11_Da KnownBoundary 0 0.00 0.00 17.95 8.12 8.57 2.56 5.70 1.52 8.19 7.47 0.00 0.00 0.00 9.95 19.66 3.85 4.77 3.81 7.72 2.68 5.68 5.39 4.01 66 E11a_E11b KnownJunction 0 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E11a_E12a KnownJunction 0 31.34 17.76 71.97 29.63 11.88 49.91 38.07 47.73 60.56 80.53 81.02 12.60 33.93 89.18 81.59 40.93 40.21 112.09 53.65 24.61 142.46 79.79 113.96 68 ER11b ExonRegion 0 11.96 8.64 22.61 18.04 7.18 7.62 12.92 11.28 16.26 12.08 3.41 2.12 3.49 11.32 13.56 8.48 5.78 14.77 10.95 9.38 5.84 6.96 7.13 69 E11_Ab KnownBoundary 0 35.56 5.53 35.01 10.75 28.35 15.10 13.78 18.44 16.09 16.87 5.21 6.30 19.64 7.71 14.09 3.67 17.58 6.30 16.19 16.23 5.31 0.00 3.50 70 ER11c ExonRegion 0 22.04 34.02 15.28 5.38 13.13 18.30 34.96 8.21 5.31 8.87 7.38 13.13 25.30 9.08 23.15 11.97 21.93 9.37 15.53 30.75 9.22 14.06 31.51 71 ER12a ExonRegion 0 18.91 21.75 63.74 42.97 26.40 51.95 36.95 42.89 77.25 76.46 60.62 8.16 18.27 83.37 67.31 39.71 52.29 103.68 58.01 31.76 151.79 85.56 96.49 72 E12_Da KnownBoundary 0 37.49 38.81 72.88 56.64 48.81 75.07 36.83 53.48 119.99 105.78 98.29 18.31 41.56 89.71 43.88 23.75 49.28 165.52 100.05 58.61 168.41 46.90 111.57 73 ER12b ExonRegion 0 82.73 50.12 126.65 82.84 71.84 66.79 74.48 83.77 92.98 93.30 50.06 16.77 17.43 62.17 48.79 31.88 32.32 72.88 64.58 47.32 138.07 100.86 98.04 74 ER12c ExonRegion 0 4.54 9.88 6.48 5.06 1.53 2.88 7.75 4.94 5.29 5.73 0.55 0.00 0.00 0.00 1.66 1.27 4.24 3.96 6.37 0.00 4.72 0.00 4.20