Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GGT5 Gene 0 50.93 1.40 45.16 42.67 24.71 32.75 12.15 59.80 57.70 30.19 0.30 0.70 0.91 0.65 0.87 0.82 0.84 1.92 1.19 1.89 3.95 82.84 50.77 2 327365 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 438024 Transcript 0 0.00 0.00 3.99 0.00 0.00 0.00 0.00 1.89 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 4.01 4 418439 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 3.76 5 424217 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 263112 Transcript 0 2.96 0.00 3.22 2.80 3.65 4.26 4.50 13.10 3.04 5.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.65 3.16 7 398292 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 425408 Transcript 0 48.20 1.49 7.46 17.26 12.89 11.54 3.46 12.86 11.93 6.81 0.35 5.87 8.47 3.37 7.35 3.80 1.81 0.68 2.35 3.89 1.61 25.65 15.53 9 ER1a ExonRegion 0 7.11 4.33 25.25 30.79 22.37 16.17 9.48 18.30 21.83 48.77 0.00 2.98 0.00 1.52 1.66 1.32 2.71 12.81 3.34 20.47 0.79 22.44 19.11 10 E1_Ab KnownBoundary 0 3.11 0.00 29.06 29.63 24.45 19.08 10.02 20.09 23.18 42.23 0.00 0.00 0.00 2.47 0.00 0.00 3.83 5.14 9.60 8.25 0.00 9.12 19.04 11 E1_Ac KnownBoundary 0 7.56 0.00 5.44 8.26 4.16 0.00 0.00 7.64 1.79 12.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.16 0.00 3.26 0.00 0.00 4.35 12 E1_Ad KnownBoundary 0 56.08 3.09 36.93 69.92 41.34 71.32 20.71 41.85 80.90 100.20 2.21 6.30 0.00 0.00 0.00 3.42 14.03 25.54 9.22 21.48 7.78 125.41 132.82 13 ER1b ExonRegion 0 8.47 2.03 46.56 58.60 42.81 20.17 19.53 38.89 45.70 107.52 0.00 0.00 0.00 3.25 0.73 2.97 13.20 24.02 9.56 25.00 2.20 43.23 47.72 14 ER1c ExonRegion 0 36.54 2.03 49.01 66.71 44.92 54.92 23.20 54.95 69.82 119.16 0.00 0.00 0.00 1.11 0.00 4.54 10.77 24.02 9.05 15.45 4.52 97.05 104.95 15 ER1d ExonRegion 0 23.53 0.41 34.89 35.57 20.28 32.61 11.90 51.75 59.98 44.64 0.19 0.00 0.00 0.30 0.21 1.44 2.49 5.42 1.75 3.83 4.93 108.01 80.78 16 E1a_E2a KnownJunction 0 65.64 0.00 43.49 18.91 14.52 19.70 14.57 39.47 47.77 26.89 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 3.15 62.15 23.65 17 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 18 E1a_E6a KnownJunction 0 0.00 0.00 3.99 0.00 0.00 0.00 0.00 1.89 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 4.01 19 ER2a ExonRegion 0 36.19 0.00 41.54 22.48 14.42 22.34 10.48 62.92 56.86 19.55 0.75 0.00 0.00 0.42 0.00 0.00 0.00 0.00 1.24 0.00 3.70 62.68 41.16 20 E2a_E3a KnownJunction 0 59.64 0.00 52.54 27.07 37.27 37.54 15.28 67.07 56.57 29.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 58.42 48.91 21 E2a_E4a KnownJunction 0 2.96 0.00 3.22 2.80 3.65 4.26 4.50 13.10 3.04 5.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.65 3.16 22 ER3a ExonRegion 0 24.19 2.16 27.61 11.80 10.31 20.65 6.52 39.70 32.65 15.07 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 1.42 35.29 15.57 23 E3a_E4a KnownJunction 0 19.11 0.00 21.61 9.82 14.86 10.11 6.36 44.52 24.80 8.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.78 26.72 24 ER4a ExonRegion 0 12.38 1.50 23.84 13.81 20.71 13.20 7.66 44.04 22.47 16.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.68 32.88 25 E4_Da KnownBoundary 0 2.89 3.16 34.71 27.37 17.23 12.21 5.79 64.45 46.53 26.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 48.37 22.28 26 ER4b ExonRegion 0 28.52 0.92 34.70 22.20 18.09 23.58 12.54 50.17 56.55 20.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.83 56.64 26.06 27 E4b_E5a KnownJunction 0 43.71 0.00 61.97 32.16 24.36 55.48 22.21 54.75 80.61 25.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.08 61.48 47.89 28 E4b_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 3.76 29 E4b_E6a NovelJunction 0 3.11 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.19 0.00 30 ER5a ExonRegion 0 34.29 0.00 53.92 35.16 21.41 44.74 14.03 54.62 71.39 20.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.61 66.67 35.24 31 ER5b ExonRegion 0 42.90 0.68 51.54 39.40 21.04 38.20 11.53 48.94 76.17 20.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.97 75.20 35.37 32 E5a_E6a KnownJunction 0 52.01 0.00 82.67 52.04 41.77 45.14 12.23 57.30 73.76 20.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 122.22 39.61 33 ER6a ExonRegion 0 46.55 0.00 52.21 50.20 32.38 33.16 10.52 75.21 76.33 25.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.42 89.49 50.08 34 E6a_E7a KnownJunction 0 61.42 0.00 69.75 64.66 37.95 49.63 12.06 83.79 89.78 27.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 93.87 48.23 35 ER7a ExonRegion 0 64.42 0.89 58.83 43.06 28.69 43.65 16.65 76.57 67.81 29.43 1.44 0.00 0.00 1.00 0.00 0.50 0.00 1.03 0.56 0.00 5.10 106.62 54.75 36 E7a_E8a KnownJunction 0 40.53 2.63 63.48 63.53 39.81 56.84 22.66 130.00 71.70 30.46 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 4.80 0.00 2.35 71.95 34.91 37 E7a_E9a NovelJunction 0 0.00 0.00 0.00 1.40 3.40 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.57 0.00 38 ER8a ExonRegion 0 50.99 1.86 49.77 35.43 22.70 32.58 10.94 70.25 58.15 21.30 1.27 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.60 0.00 2.40 67.61 47.38 39 E8_Ab KnownBoundary 0 97.20 5.26 72.79 56.84 52.12 55.54 17.49 100.22 83.19 39.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.50 110.16 60.44 40 ER8b ExonRegion 0 68.32 2.60 65.42 53.99 30.10 46.91 18.06 85.08 69.82 32.56 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.37 0.00 2.20 74.78 64.12 41 E8a_E9a KnownJunction 0 77.27 2.50 71.85 58.97 26.57 54.46 19.70 83.34 67.88 32.72 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.09 0.00 2.29 65.40 64.28 42 ER9a ExonRegion 0 88.46 1.44 61.31 49.66 36.76 64.39 15.44 81.11 65.00 35.86 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.56 2.22 74.71 45.48 43 E9a_E10a KnownJunction 0 3.78 0.00 13.33 0.00 4.33 7.95 2.16 3.86 4.43 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.78 4.35 44 E9a_E10b KnownJunction 0 79.05 3.22 47.57 70.39 16.04 29.36 10.16 62.64 50.64 30.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 60.56 48.66 45 ER10a ExonRegion 0 15.87 0.51 24.20 16.01 10.03 18.34 3.64 20.74 16.98 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 29.17 14.68 46 ER10b ExonRegion 0 78.43 2.51 50.92 57.37 28.84 36.40 11.60 69.33 61.35 30.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.68 3.56 92.04 60.50 47 E10a_E11a KnownJunction 0 129.36 3.35 67.38 62.60 48.13 55.37 8.26 59.84 62.30 26.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 2.72 87.38 55.66 48 ER11a ExonRegion 0 96.41 1.50 76.08 64.94 38.59 64.25 18.55 77.27 73.04 27.70 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.57 1.46 0.38 5.12 98.09 66.78 49 E11_Da NovelBoundary 0 7.33 0.00 7.16 12.72 3.90 4.54 0.00 12.16 6.60 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.39 29.02 50 E11a_E12a KnownJunction 0 39.56 0.00 8.37 15.42 0.00 15.79 1.81 12.12 17.16 7.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.02 16.73 51 E11a_E13a KnownJunction 0 103.80 0.00 111.26 92.70 50.00 44.29 21.33 92.21 74.45 27.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 9.02 69.87 34.74 52 E12_Aa NovelBoundary 0 14.00 0.00 1.63 0.00 24.19 0.00 9.14 0.00 1.59 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.57 3.67 53 ER12a ExonRegion 0 76.44 4.46 7.75 16.65 22.53 13.61 8.57 15.28 10.72 9.64 1.06 17.60 25.42 10.11 22.06 11.41 5.43 2.03 7.06 11.67 4.83 28.63 21.66 54 E12_Da NovelBoundary 0 28.75 13.94 22.18 48.94 7.81 24.08 12.19 32.94 34.29 16.01 2.42 12.60 12.66 2.71 15.95 25.29 20.48 30.47 0.00 6.39 2.53 8.33 12.29 55 E12a_E13a KnownJunction 0 28.60 0.00 6.27 19.71 16.13 5.22 0.00 11.17 7.93 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.29 8.19 56 I12 Intron 0 27.14 1.46 5.79 7.61 11.56 6.34 5.53 5.57 3.18 4.19 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.79 0.00 0.61 0.00 11.71 13.12 57 I12_SR1 SilentIntronRegion 0 27.44 1.48 5.85 7.69 11.70 6.41 5.58 5.63 3.21 4.22 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.80 0.00 0.62 0.00 11.82 13.27 58 E13_Aa NovelBoundary 0 55.64 0.00 9.96 7.76 11.04 8.23 5.83 19.59 4.95 4.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.37 21.94 59 ER13a ExonRegion 0 73.95 2.04 52.54 66.79 28.55 26.45 12.37 68.37 56.44 30.08 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.48 0.71 0.00 2.63 97.03 44.78 60 ER13b ExonRegion 0 1.76 0.00 1.63 0.00 0.00 1.83 1.10 0.29 0.21 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.82 0.00