Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZDHHC8 Gene 0 22.45 25.53 131.99 71.57 27.94 51.27 33.29 88.03 63.88 144.61 68.97 20.17 23.39 96.55 83.59 63.31 58.33 116.58 104.03 71.57 128.28 62.75 69.91 2 436518 Transcript 0 1.41 0.44 4.95 2.51 1.31 2.88 1.66 2.68 1.13 0.99 2.93 2.04 0.00 7.13 7.68 1.69 2.85 3.52 4.12 3.63 4.43 2.25 4.49 3 334554 Transcript 0 2.52 4.46 33.04 6.96 13.96 10.48 9.26 32.94 14.72 38.16 1.26 0.62 0.14 3.97 2.24 1.66 1.44 14.30 44.35 23.71 5.13 3.33 2.71 4 320602 Transcript 0 0.00 3.22 10.61 2.06 4.16 0.00 2.08 4.31 0.00 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 5 405930 Transcript 0 6.96 0.00 4.88 0.00 0.00 5.22 0.00 10.23 4.60 2.85 0.00 0.00 0.00 2.47 4.45 0.00 0.00 4.15 3.67 0.00 3.03 3.12 0.00 6 468112 Transcript 0 0.00 0.00 0.86 1.02 0.00 0.92 0.00 0.00 0.93 0.86 0.97 0.00 0.00 2.44 2.90 0.74 0.00 0.92 2.39 0.53 0.00 0.00 0.00 7 469212 Transcript 1 19.46 25.21 85.64 42.86 19.82 36.56 33.31 41.70 42.24 54.41 68.28 11.25 9.07 87.48 57.64 44.53 37.80 110.94 63.76 54.04 84.84 43.61 67.10 8 472497 Transcript 0 22.19 16.10 80.25 24.50 18.60 27.29 23.18 48.07 28.99 59.73 62.00 10.85 10.77 86.19 55.26 58.41 43.25 67.43 50.82 32.92 70.59 46.91 46.60 9 480335 Transcript 0 1.17 0.00 5.20 1.17 1.54 1.06 0.76 2.47 1.71 4.56 0.00 0.02 0.00 0.51 0.35 1.14 2.99 2.45 2.99 0.82 0.85 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 1.93 1.19 0.00 0.00 0.00 1.43 1.08 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 1.25 3.82 0.00 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 0.00 0.15 0.08 1.02 5.33 0.48 0.28 0.43 0.62 2.21 1.28 0.00 3.40 2.84 1.17 1.46 5.63 6.08 3.28 5.77 1.00 4.88 13 E2_Ab KnownBoundary 0 0.00 2.89 4.08 0.00 0.00 2.16 0.00 0.00 1.71 2.53 0.00 0.00 6.17 12.18 0.00 0.00 3.93 8.08 4.14 2.43 8.65 4.71 7.85 14 ER2b ExonRegion 0 7.66 6.75 11.91 4.09 10.99 4.64 7.75 16.59 14.27 26.40 14.60 3.41 11.58 30.58 23.52 9.99 3.30 12.38 26.97 12.58 40.42 11.70 9.43 15 E2_Ac KnownBoundary 0 15.85 18.15 36.90 12.29 15.45 10.96 19.87 31.63 24.77 49.24 27.27 11.70 0.00 31.84 48.71 18.80 0.00 28.60 70.78 15.72 77.90 16.35 20.57 16 ER2c ExonRegion 0 4.91 12.89 47.64 28.01 10.94 20.76 15.82 28.52 31.54 78.36 46.63 9.90 9.88 68.21 52.59 35.93 20.16 46.06 44.03 23.33 93.15 24.03 33.46 17 E2a_E3a KnownJunction 0 2.74 16.05 82.91 70.79 23.94 24.36 16.69 41.90 45.63 106.94 84.34 5.85 20.45 71.05 49.94 64.43 43.20 75.11 53.37 47.43 110.64 39.43 76.66 18 E2a_E7b KnownJunction 0 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E3_Aa NovelBoundary 0 0.00 3.22 29.57 21.34 0.00 16.07 10.69 18.15 8.13 13.43 6.69 0.00 0.00 2.47 10.01 11.19 0.00 21.18 16.19 17.71 11.37 11.63 26.80 20 ER3a ExonRegion 0 9.35 15.00 133.96 84.79 12.81 34.98 24.10 102.57 86.64 155.84 102.13 16.64 40.33 110.92 79.33 88.82 81.20 200.97 129.84 95.87 199.33 72.17 93.88 21 E3a_E4a KnownJunction 0 20.23 34.40 224.95 118.57 28.69 66.21 29.63 128.77 112.79 229.00 134.51 29.56 60.55 189.59 98.28 114.24 121.08 195.91 243.02 115.37 231.48 104.71 96.63 22 ER4a ExonRegion 0 15.58 31.24 185.55 121.37 27.03 57.56 37.74 116.65 118.56 234.98 147.59 34.99 33.63 176.92 124.18 109.40 133.69 158.17 147.88 132.82 266.47 110.44 121.54 23 E4_Da NovelBoundary 0 0.00 9.08 26.85 6.86 15.87 7.33 8.04 27.07 12.33 20.58 4.11 6.45 6.01 6.77 9.39 0.00 4.68 32.13 9.51 2.75 4.76 8.76 23.47 24 E4a_E5a KnownJunction 0 19.56 53.02 230.77 172.37 32.34 71.72 29.94 157.48 136.43 258.76 128.56 57.62 72.56 130.38 140.68 138.00 160.36 145.71 113.70 172.00 236.48 161.04 108.84 25 E4a_E7b KnownJunction 0 0.00 3.22 10.61 2.06 4.16 0.00 2.08 4.31 0.00 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 26 ER5a ExonRegion 0 23.70 36.78 137.74 104.71 33.56 77.38 57.24 93.57 95.82 192.76 118.13 49.28 37.93 189.06 134.38 119.28 116.64 172.15 155.14 142.18 264.95 120.43 140.23 27 E5_Da NovelBoundary 1 16.89 9.34 99.85 41.55 11.21 45.43 36.17 33.72 22.60 37.96 75.65 12.15 0.00 59.10 70.46 53.06 45.35 82.78 35.86 55.74 59.62 41.88 49.85 28 E5a_E6b KnownJunction 0 13.34 19.14 69.39 94.79 3.48 40.37 37.94 87.32 62.38 164.66 43.12 6.30 13.64 75.52 47.72 66.73 55.54 122.87 59.95 59.12 151.23 77.40 36.62 29 E5_Db NovelBoundary 0 10.67 24.21 38.76 25.60 24.70 37.48 36.79 26.62 10.50 35.83 51.07 12.15 6.82 88.88 36.59 50.24 41.42 63.92 64.10 63.47 72.40 30.74 33.97 30 ER5b ExonRegion 0 4.23 1.32 11.53 6.33 3.93 8.63 4.98 6.61 2.32 2.97 8.75 6.11 0.00 21.40 23.04 5.07 8.54 10.54 12.37 9.64 9.46 6.74 13.47 31 E6_Aa NovelBoundary 0 16.52 11.18 96.51 75.95 31.15 25.72 32.11 38.20 45.80 51.57 41.54 12.15 39.93 131.97 89.99 48.36 73.12 108.40 87.53 64.17 58.69 32.27 73.92 32 ER6a ExonRegion 0 19.46 25.21 85.64 42.86 19.82 36.56 33.31 41.70 42.24 54.41 68.28 11.25 9.07 87.48 57.64 44.53 37.80 110.94 63.76 54.04 84.84 43.61 67.10 33 E6_Ab KnownBoundary 1 14.08 48.74 105.58 55.34 22.75 39.35 64.57 76.97 46.64 78.22 60.49 0.00 6.17 78.58 74.79 30.50 37.68 104.38 69.27 58.29 90.01 40.35 65.39 34 ER6b ExonRegion 0 22.43 45.99 133.07 97.66 26.26 75.13 71.49 111.04 83.09 199.72 98.73 25.09 19.91 139.20 102.57 89.60 80.13 183.05 120.51 108.49 264.40 115.06 114.79 35 E6_Da NovelBoundary 0 11.19 27.36 66.50 16.48 39.13 39.69 21.07 32.41 32.03 49.35 56.91 0.00 0.00 57.39 37.58 41.70 50.58 64.58 49.79 35.92 44.85 36.86 56.00 36 E6a_E7b KnownJunction 1 9.93 17.69 103.04 81.24 15.87 86.48 53.75 89.58 75.58 163.91 83.60 31.06 8.12 95.71 31.15 35.46 30.39 148.32 115.39 101.44 181.56 77.58 99.36 37 I6 Intron 1 15.59 13.31 39.34 14.96 11.68 21.51 14.44 23.18 14.06 43.35 44.28 1.81 2.11 63.76 48.13 33.23 45.01 50.63 52.12 24.95 41.47 28.41 39.24 38 I6_AR1 ActiveIntronRegion 1 15.75 13.45 39.76 15.12 11.80 21.73 14.60 23.43 14.20 43.81 44.75 1.83 2.13 64.43 48.63 33.59 45.50 51.17 52.69 25.21 41.91 28.72 39.67 39 E7_Aa NovelBoundary 1 32.01 25.00 102.21 27.40 22.92 51.33 20.40 49.29 43.87 81.77 80.28 11.55 0.00 69.57 63.79 34.86 46.66 72.79 49.88 29.21 69.13 60.62 60.95 40 ER7a ExonRegion 0 22.19 16.10 80.25 24.50 18.60 27.29 23.18 48.07 28.99 59.73 62.00 10.85 10.77 86.19 55.26 58.41 43.25 67.43 50.82 32.92 70.59 46.91 46.60 41 E7_Ab KnownBoundary 0 19.63 39.47 116.29 31.33 29.71 46.73 17.62 67.65 30.03 73.41 67.28 12.45 6.82 94.41 73.55 47.59 43.20 59.61 34.92 35.79 83.58 56.40 49.34 42 ER7b ExonRegion 1 23.33 61.66 202.63 115.88 44.75 112.16 71.64 134.88 92.77 231.85 135.11 25.50 17.88 189.74 102.40 126.56 113.14 266.75 165.08 126.16 270.43 124.87 121.02 43 E7a_E8a KnownJunction 0 28.75 37.36 226.51 94.29 67.32 96.36 68.89 141.46 111.14 220.43 120.14 12.60 18.83 178.94 80.72 105.70 76.76 273.01 179.68 107.00 221.84 117.32 156.81 44 ER8a ExonRegion 0 37.04 55.39 218.15 107.94 33.67 72.60 55.00 137.31 105.94 250.40 143.48 48.69 53.21 195.82 136.79 119.62 108.67 204.53 194.44 117.47 261.82 134.94 143.71 45 E8a_E9a KnownJunction 1 37.56 47.75 196.03 131.05 37.69 61.21 45.18 154.27 126.91 255.78 146.93 13.95 69.15 203.96 143.03 114.41 126.88 161.88 205.65 118.06 277.81 119.77 143.24 46 ER9a ExonRegion 0 62.75 56.31 206.41 114.58 22.55 88.96 49.12 131.85 113.16 273.33 146.27 47.35 44.81 165.11 133.88 124.48 132.67 227.71 148.99 98.63 283.72 128.42 116.40 47 E9_Da NovelBoundary 0 50.75 21.31 119.45 85.17 17.49 27.37 26.94 80.42 72.37 153.68 54.70 23.86 12.82 58.74 74.29 54.34 18.98 180.16 73.51 57.53 128.93 77.09 64.45 48 E9b_E10a KnownJunction 0 99.87 62.16 305.81 188.82 35.74 139.01 95.79 208.37 186.20 356.08 193.89 83.28 131.65 218.32 226.71 240.36 127.26 419.30 287.63 184.40 407.85 239.24 262.15 49 ER9b ExonRegion 0 75.81 47.14 251.31 158.47 26.03 104.86 64.99 177.72 147.20 312.38 168.16 73.99 106.59 198.88 189.11 193.73 110.73 331.59 236.01 152.61 369.02 202.10 197.02 50 ER10a ExonRegion 0 36.31 48.08 250.39 147.03 32.45 145.52 72.01 187.19 140.15 305.63 172.40 50.18 83.87 221.54 218.81 137.45 149.53 274.02 190.66 145.28 323.38 152.72 166.27 51 E10a_E11a KnownJunction 0 30.60 67.29 233.26 154.59 22.67 120.10 74.86 185.08 104.86 264.46 156.57 43.51 92.36 189.24 143.40 146.20 100.89 265.01 105.60 135.57 227.77 115.36 153.06 52 ER10b ExonRegion 0 0.00 0.00 0.00 2.04 0.00 1.83 0.00 0.00 1.85 1.72 1.93 0.00 0.00 4.87 5.80 1.49 0.00 1.85 4.78 1.06 0.00 0.00 0.00 53 I10 Intron 0 2.89 3.29 24.12 16.96 5.93 7.42 11.51 9.66 13.57 22.07 9.47 1.10 1.81 12.55 9.89 10.13 9.70 34.20 16.29 16.59 13.90 4.35 7.51 54 I10_SR1 SilentIntronRegion 0 2.82 2.89 20.30 16.31 6.64 7.40 11.13 7.47 14.03 23.51 10.61 1.26 1.50 13.22 7.82 11.63 7.97 37.12 14.49 16.38 13.64 4.31 10.13 55 I10_AR2 ActiveIntronRegion 0 2.98 4.00 29.67 20.14 5.67 8.88 13.66 12.83 15.70 25.62 8.78 0.88 1.98 13.37 12.35 10.19 11.55 36.01 20.17 19.26 15.13 3.75 4.24 56 E11_Aa NovelBoundary 0 7.41 0.00 47.19 20.51 0.00 2.50 2.25 34.58 28.36 12.46 12.27 0.00 0.00 12.01 27.81 7.95 4.21 37.23 27.86 17.83 28.73 9.37 0.00 57 ER11a ExonRegion 0 28.71 44.06 213.52 111.35 17.36 78.10 41.91 133.06 98.49 251.78 103.66 40.57 62.18 187.81 180.78 141.71 109.74 231.22 144.44 95.07 216.57 136.13 145.71 58 E11_Da KnownBoundary 1 142.62 73.93 252.15 182.59 42.36 189.15 83.34 209.97 120.80 344.05 134.72 31.06 143.01 271.53 209.28 177.30 157.74 369.18 232.19 130.14 249.64 158.66 233.04 59 ER11b ExonRegion 1 145.01 71.65 204.27 132.83 66.71 179.88 96.93 154.92 91.14 263.71 166.36 42.09 114.52 273.19 284.32 214.96 114.15 263.93 260.90 110.59 237.33 117.36 213.97 60 E11_Ab KnownBoundary 0 114.17 78.54 188.23 107.41 71.14 134.35 108.15 113.86 92.56 198.56 140.88 37.81 65.90 204.25 229.80 160.04 110.61 139.74 217.79 87.44 177.67 74.22 166.80 61 ER11c ExonRegion 0 29.56 28.39 211.55 106.26 25.87 59.17 37.87 133.56 100.00 221.22 112.83 40.52 45.25 159.38 141.24 96.51 96.16 197.54 128.66 85.76 204.58 93.69 117.87 62 E11_Db KnownBoundary 0 72.38 55.71 258.95 163.95 55.43 93.64 59.97 136.04 123.52 261.21 144.98 67.67 65.42 208.67 234.87 170.04 152.69 318.24 200.57 117.86 265.46 194.91 193.69 63 E11b_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 64 ER11d ExonRegion 0 42.98 45.82 220.71 129.90 39.16 101.95 53.80 138.09 99.48 236.65 118.27 33.18 45.94 162.25 146.33 117.57 99.59 269.19 143.32 105.73 221.05 104.10 133.65 65 E11_Dc NovelBoundary 0 3.33 2.57 24.30 3.96 12.22 2.38 5.92 6.70 14.76 19.45 25.95 6.00 6.82 48.86 28.18 26.66 7.39 19.61 12.14 11.63 34.41 3.12 16.82 66 E11c_E12a KnownJunction 0 28.89 29.27 241.83 164.05 10.61 40.20 33.43 164.50 101.88 214.17 47.17 5.70 13.64 44.56 21.39 76.90 40.86 266.26 73.23 62.32 88.84 46.60 97.74 67 E11c_E12b KnownJunction 0 6.96 0.00 4.88 0.00 0.00 5.22 0.00 10.23 4.60 2.85 0.00 0.00 0.00 2.47 4.45 0.00 0.00 4.15 3.67 0.00 3.03 3.12 0.00 68 I11 Intron 1 12.69 6.17 54.61 15.62 11.32 14.55 11.77 28.80 20.06 35.20 42.40 10.34 10.73 57.32 48.70 46.02 18.63 27.01 17.42 19.66 36.37 15.51 20.51 69 I11_AR1 ActiveIntronRegion 1 12.71 6.18 54.69 15.64 11.34 14.57 11.78 28.84 20.09 35.25 42.46 10.35 10.75 57.40 48.76 46.08 18.65 27.05 17.44 19.69 36.41 15.53 20.53 70 E12_Aa NovelBoundary 1 56.45 9.01 137.96 30.93 43.89 22.20 31.00 87.45 52.84 78.25 88.02 0.00 17.86 49.21 46.23 151.93 39.46 102.97 68.71 34.71 84.02 28.17 42.34 71 ER12a ExonRegion 0 34.06 31.83 157.56 114.77 34.18 65.34 37.26 86.63 64.68 149.44 89.42 23.46 25.58 119.73 123.11 76.79 74.69 110.59 98.91 72.69 153.61 79.71 83.24 72 E12_Da KnownBoundary 0 7.04 3.42 68.68 13.58 30.98 30.83 18.06 30.15 21.35 53.40 0.00 0.00 0.00 14.77 0.00 3.59 4.30 8.54 25.13 20.20 2.66 8.33 0.00 73 ER12b ExonRegion 0 7.56 13.39 98.98 19.44 38.18 26.12 24.67 95.07 43.73 112.71 1.57 0.59 0.42 8.52 3.89 3.80 2.86 35.42 123.79 67.84 9.61 8.99 3.26 74 E12_Ab KnownBoundary 0 13.78 14.80 57.42 7.89 30.81 43.61 20.71 79.81 31.48 85.58 0.00 0.00 0.00 7.83 4.45 7.35 0.00 34.61 51.95 29.15 5.56 0.00 3.76 75 ER12c ExonRegion 0 6.50 9.22 64.53 12.97 28.64 23.40 18.44 56.70 35.64 78.68 2.12 1.37 0.60 6.88 4.52 6.69 2.05 36.61 70.37 42.07 12.35 4.69 5.41 76 E12_Db NovelBoundary 0 0.00 11.77 26.37 1.93 36.25 2.33 21.20 31.34 20.11 44.38 0.00 0.00 0.00 0.00 0.00 4.19 0.00 7.88 70.97 27.10 3.15 2.94 0.00 77 E12_Dc NovelBoundary 0 3.04 12.23 22.74 6.06 3.40 33.39 3.71 47.28 10.68 32.66 0.00 0.00 0.00 4.94 0.00 0.00 0.00 17.20 71.06 30.04 0.00 2.57 4.35 78 ER12d ExonRegion 0 0.00 0.00 0.00 1.36 2.68 0.00 2.65 3.46 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 3.19 0.00 0.00 0.00 0.00 79 I12 Intron 0 4.42 9.45 66.40 14.86 23.94 15.34 19.08 60.44 32.50 91.33 1.12 0.00 0.00 3.75 2.89 4.14 0.38 30.93 81.03 53.14 7.16 4.11 4.78 80 I12_SR1 SilentIntronRegion 0 4.63 9.86 69.22 15.52 24.77 15.95 19.56 63.15 34.06 95.09 1.18 0.00 0.00 3.90 2.93 4.34 0.40 32.19 84.22 55.24 7.45 4.32 5.01 81 ER13a ExonRegion 0 2.34 0.00 10.40 2.34 3.08 2.12 1.52 4.94 3.43 9.12 0.00 0.03 0.00 1.03 0.70 2.28 2.33 4.90 5.99 1.63 1.71 0.00 0.00