Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CECR1 Gene 0 231.69 5.69 8.19 23.78 91.36 57.14 42.62 56.82 85.82 23.15 133.31 125.64 286.75 189.83 175.67 236.38 143.97 3.19 4.87 6.67 62.58 4.59 22.71 2 366217 Transcript 0 1.62 1.93 0.46 0.92 2.02 0.82 1.55 0.61 1.45 1.49 0.49 2.90 3.65 1.36 3.24 4.04 1.79 0.70 1.60 1.84 0.77 0.78 1.92 3 489588 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 399839 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 441548 Transcript 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 399837 Transcript 0 13.17 0.00 0.00 0.00 32.45 23.70 18.89 1.56 4.95 0.16 31.49 1.92 4.99 39.61 23.54 30.38 27.68 0.00 0.00 0.00 0.00 0.00 0.00 7 262607 Transcript 0 120.78 0.00 1.17 1.48 29.22 1.33 6.55 7.85 4.31 0.92 7.39 6.05 39.55 12.03 12.65 39.69 18.71 0.00 0.00 0.00 0.00 0.00 0.00 8 330232 Transcript 0 57.48 0.66 0.20 11.44 5.53 79.31 38.86 4.47 10.21 0.37 1.47 0.86 6.38 1.69 0.93 5.81 2.92 2.76 0.00 18.99 186.06 5.03 135.28 9 480276 Transcript 0 14.32 0.62 0.00 2.16 5.82 1.88 3.28 4.20 4.79 2.03 3.96 4.81 5.95 13.76 11.46 17.76 9.01 0.00 1.93 0.90 1.35 0.47 0.33 10 449907 Transcript 0 14.35 0.80 0.89 1.72 11.02 3.23 4.27 9.81 5.69 2.05 4.23 5.37 7.63 16.64 8.30 25.01 8.25 0.00 1.90 0.36 2.90 0.02 0.63 11 469063 Transcript 0 42.53 14.05 12.62 15.35 24.75 9.89 21.45 17.40 19.78 11.32 12.58 21.76 50.19 27.25 32.46 52.95 20.60 25.53 15.56 21.05 11.29 4.18 18.42 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 8.83 10.69 2.74 4.58 8.04 4.90 9.28 3.65 5.41 4.99 2.91 16.38 20.16 8.14 18.52 21.58 9.37 4.21 9.59 11.01 4.59 4.69 11.50 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 0.92 0.90 0.00 0.92 4.10 0.00 0.00 0.00 2.01 3.09 0.00 1.00 1.74 0.00 0.92 2.68 1.34 0.00 0.00 0.00 0.00 0.00 0.00 19 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 1.79 0.00 0.00 6.30 0.00 0.00 0.00 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3b ExonRegion 0 0.03 0.00 0.00 2.30 0.61 0.00 0.00 0.00 0.97 0.65 0.00 0.51 0.00 0.90 2.49 2.25 2.18 0.00 0.00 0.00 0.00 0.00 0.00 21 E3_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3c ExonRegion 0 0.70 0.82 0.00 0.82 0.40 0.25 0.10 2.07 0.77 0.69 0.21 0.00 0.15 1.00 2.35 4.05 0.62 0.00 0.00 0.00 0.00 0.00 0.00 23 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E3a_E5c KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E3a_E5d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER4a ExonRegion 1 26.34 0.00 0.00 0.00 64.91 47.39 37.79 3.11 9.90 0.33 62.98 3.83 9.98 79.21 47.08 60.76 55.36 0.00 0.00 0.00 0.00 0.00 0.00 27 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E4a_E5c NovelJunction 1 90.09 0.00 0.00 0.00 243.21 93.98 74.72 7.15 24.88 1.26 133.82 7.65 31.17 157.40 31.65 90.15 121.55 0.00 0.00 0.00 0.00 0.00 0.00 29 ER5a ExonRegion 0 120.78 0.00 1.17 1.48 29.22 1.33 6.55 7.85 4.31 0.92 7.39 6.05 39.55 12.03 12.65 39.69 18.71 0.00 0.00 0.00 0.00 0.00 0.00 30 E5_Ab KnownBoundary 0 5.63 0.00 0.00 0.00 8.06 0.00 2.25 0.00 1.39 1.40 7.48 0.00 0.00 0.00 0.00 15.64 12.16 0.00 0.00 0.00 0.00 0.00 0.00 31 E5_Ac KnownBoundary 0 12.22 0.00 0.00 0.00 7.30 2.44 1.90 2.22 0.00 0.00 0.00 0.00 6.33 0.00 6.18 23.84 15.71 0.00 0.00 0.00 0.00 0.00 0.00 32 ER5b ExonRegion 1 82.54 0.00 1.23 4.09 176.60 86.19 52.96 8.64 25.94 2.29 94.71 8.66 60.97 164.04 58.03 145.63 138.64 0.00 0.00 0.00 0.00 0.00 0.00 33 ER5c ExonRegion 1 120.31 0.00 1.23 6.06 160.05 114.18 39.58 13.83 35.46 3.86 74.98 15.04 87.88 161.64 82.91 201.48 140.20 0.00 0.00 0.00 0.00 0.00 0.00 34 E5_Ad KnownBoundary 1 172.99 0.00 3.58 9.66 145.42 129.47 33.43 10.02 38.89 4.38 67.44 6.90 131.32 106.36 67.62 250.62 123.98 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5d ExonRegion 0 78.90 0.00 0.48 6.23 56.12 40.65 7.42 20.48 42.06 6.49 77.39 37.05 110.30 65.40 90.42 195.63 97.77 0.00 0.00 0.00 0.00 0.00 0.00 36 E5_Da KnownBoundary 0 60.83 0.00 0.00 2.06 32.26 8.63 6.36 25.06 50.23 8.14 131.82 67.22 128.08 137.50 157.36 84.17 148.39 0.00 0.00 0.00 0.00 0.00 0.00 37 ER5e ExonRegion 0 128.05 0.00 1.05 6.51 99.59 53.91 37.37 25.18 64.89 11.71 140.75 109.48 203.21 212.20 135.98 275.25 190.22 0.00 0.00 0.00 0.00 0.43 0.00 38 E5b_E6a KnownJunction 0 79.94 0.00 0.00 9.59 59.42 28.05 24.51 40.75 64.03 18.56 161.99 224.02 221.41 206.08 118.05 190.29 240.49 0.00 0.00 0.00 0.00 0.00 0.00 39 ER6a ExonRegion 0 78.51 0.00 1.34 8.87 48.51 18.45 14.31 31.30 65.68 22.28 130.78 182.45 253.70 189.37 136.77 190.74 188.19 0.00 0.00 0.00 0.00 0.00 0.00 40 E6_Da KnownBoundary 0 126.99 0.00 3.67 20.51 35.91 15.16 15.99 37.01 69.01 26.73 153.83 154.10 344.62 229.21 146.61 269.84 183.08 0.00 0.00 0.00 0.00 0.00 0.00 41 ER6b ExonRegion 0 114.53 0.00 2.87 15.04 46.76 29.06 22.48 30.27 90.73 28.69 222.17 257.94 453.20 353.24 181.15 365.73 268.99 0.00 0.00 0.00 0.00 0.00 0.00 42 E6b_E7a KnownJunction 0 136.47 0.00 3.40 10.22 33.02 52.47 30.07 31.38 102.00 22.08 209.16 156.20 447.21 286.19 182.46 291.12 219.73 0.00 0.00 0.00 0.00 0.00 0.00 43 ER7a ExonRegion 0 125.47 0.98 2.23 15.14 78.60 31.70 40.32 43.30 105.80 21.67 244.46 228.56 467.78 349.36 222.08 395.88 261.76 0.00 0.00 0.51 0.00 0.00 0.00 44 E7a_E10a KnownJunction 1 71.12 0.00 6.39 20.21 52.29 26.12 29.68 22.63 86.89 26.08 126.40 229.87 370.75 210.55 124.24 235.15 223.84 0.00 0.00 0.00 0.00 0.00 0.00 45 ER8a ExonRegion 0 18.27 1.32 0.40 2.66 6.74 13.47 6.74 4.59 2.74 0.74 2.94 1.71 12.75 3.37 1.85 11.62 5.84 0.47 0.00 2.75 32.72 0.68 21.29 46 E8a_E10a KnownJunction 0 96.68 0.00 0.00 20.21 4.33 145.14 70.97 4.35 17.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 35.22 339.40 9.37 249.26 47 ER9a ExonRegion 0 8.96 0.54 0.00 0.82 7.07 1.45 2.80 3.40 2.92 1.35 2.55 4.17 5.32 3.48 6.81 10.21 6.11 0.00 1.68 0.00 1.16 0.55 0.00 48 E9a_E10a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER10a ExonRegion 0 90.61 0.81 4.77 23.81 65.45 73.29 39.26 46.90 130.41 20.80 214.26 222.29 358.02 340.49 214.51 373.63 236.14 1.33 2.46 9.21 112.35 3.01 30.26 50 E10a_E11b KnownJunction 0 72.01 0.00 11.12 19.21 93.63 35.72 32.06 50.81 138.63 19.82 237.32 89.28 356.15 334.63 173.06 297.10 245.16 0.00 0.00 14.32 270.65 5.94 14.77 51 ER11a ExonRegion 0 14.35 0.80 0.89 1.72 11.02 3.23 4.27 9.81 5.69 2.05 4.23 5.37 7.63 16.64 8.30 25.01 8.25 0.00 1.90 0.36 2.90 0.02 0.63 52 E11_Ab KnownBoundary 0 13.48 0.00 2.57 2.86 23.43 2.90 0.00 7.93 8.45 1.24 4.53 0.00 6.82 21.37 14.83 28.11 8.04 0.00 0.00 3.26 6.05 0.00 0.00 53 ER11b ExonRegion 0 69.99 0.77 7.62 29.56 84.73 33.84 27.11 63.34 133.52 31.06 181.93 183.57 355.45 277.83 204.57 335.65 195.27 2.14 1.88 11.13 122.18 7.18 79.13 54 E11_Da KnownBoundary 0 41.79 0.00 0.00 7.42 7.22 5.79 10.38 12.20 10.16 5.91 9.79 24.31 26.78 21.19 4.45 32.21 25.43 0.00 0.00 9.14 0.00 2.76 0.00 55 E11a_E12b KnownJunction 0 95.35 3.16 4.23 28.67 103.48 53.55 26.90 54.71 135.70 34.81 186.26 257.93 318.32 232.15 240.06 469.62 263.49 4.48 0.00 9.46 77.16 5.63 97.66 56 ER11c ExonRegion 0 34.00 1.31 0.00 3.61 10.40 4.18 7.03 9.21 11.44 4.75 9.32 10.25 12.53 37.79 27.56 43.08 20.91 0.00 4.11 2.69 2.87 0.86 0.99 57 E11_Db NovelBoundary 0 120.02 0.00 5.35 5.73 14.35 0.00 10.07 12.36 4.37 7.09 15.21 18.61 27.60 20.66 24.72 60.24 25.81 0.00 0.00 5.62 2.72 2.33 3.50 58 I11 Intron 0 34.60 1.46 0.38 6.89 33.84 9.99 11.30 14.57 11.55 5.80 19.48 12.70 40.66 44.66 30.64 58.08 23.77 0.28 2.62 2.19 3.63 1.71 1.51 59 I11_SR1 SilentIntronRegion 0 34.66 1.47 0.38 6.91 33.91 10.01 11.32 14.60 11.57 5.81 19.52 12.73 40.74 44.75 30.69 58.19 23.82 0.28 2.63 2.19 3.63 1.72 1.51 60 E12_Aa NovelBoundary 0 365.10 246.54 365.63 381.30 316.21 185.57 450.77 381.25 291.72 238.08 171.52 51.77 97.72 59.45 83.07 263.44 232.07 336.35 195.96 300.60 151.05 90.69 202.65 61 ER12a ExonRegion 0 42.53 14.05 12.62 15.35 24.75 9.89 21.45 17.40 19.78 11.32 12.58 21.76 50.19 27.25 32.46 52.95 20.60 25.53 15.56 21.05 11.29 4.18 18.42 62 E12_Ab KnownBoundary 0 41.79 0.00 0.00 5.39 7.98 2.16 1.77 11.21 9.75 2.26 7.26 0.00 87.01 53.33 38.94 67.93 25.62 0.00 4.24 3.26 3.03 0.00 0.00 63 ER12b ExonRegion 0 122.15 7.31 5.39 24.53 79.95 71.72 51.71 63.31 133.67 32.79 235.80 186.01 294.69 328.63 226.49 389.51 266.70 2.09 0.21 4.14 127.90 6.77 33.58 64 E12a_E13a KnownJunction 0 152.99 3.03 6.36 39.86 70.63 102.78 67.52 92.70 129.02 27.56 216.16 124.84 200.96 356.82 192.22 468.42 264.98 0.00 0.00 3.26 97.55 3.12 15.02 65 E13_Aa NovelBoundary 0 41.56 0.00 3.61 11.09 20.71 0.00 3.93 21.93 11.81 2.79 2.11 6.30 0.00 4.24 15.20 36.83 4.21 1.70 4.05 8.76 0.00 0.00 0.00 66 ER13a ExonRegion 0 229.21 3.61 5.70 24.44 121.14 97.65 52.26 85.98 153.27 34.91 257.04 147.45 368.03 354.62 249.84 400.06 297.03 3.37 12.00 2.99 134.72 5.41 33.44 67 E13_Da KnownBoundary 0 311.61 13.02 5.80 30.13 157.30 97.90 71.76 82.19 145.08 31.91 267.17 121.99 285.86 382.48 207.43 406.22 373.07 1.58 0.00 5.94 146.84 3.12 36.54 68 ER13b ExonRegion 0 168.06 7.31 5.76 29.65 127.78 82.72 61.98 66.38 112.30 35.65 258.59 127.78 268.47 313.24 189.99 360.75 285.66 0.35 0.00 3.39 136.93 4.56 39.45 69 E13b_E14a KnownJunction 0 175.88 0.00 9.31 38.46 122.92 84.78 73.62 58.08 96.06 39.06 226.27 138.80 291.05 333.92 270.23 365.29 262.93 0.00 0.00 0.00 124.30 5.69 39.86 70 ER14a ExonRegion 0 164.08 6.47 9.64 29.61 96.71 65.05 51.92 54.68 105.00 31.96 182.18 90.49 211.72 295.87 192.67 296.25 229.58 2.08 6.54 4.20 110.97 4.26 33.46 71 E14a_E15a KnownJunction 0 281.38 2.70 14.37 22.87 217.91 123.68 77.86 58.78 118.72 31.83 224.11 164.15 320.92 366.18 217.07 355.97 218.98 0.00 0.00 2.75 139.56 5.82 40.29 72 ER15a ExonRegion 0 523.07 9.01 17.09 48.68 180.18 113.35 82.45 118.80 161.64 43.83 231.38 228.69 563.32 317.28 342.18 405.08 231.13 3.71 6.65 10.29 127.13 8.97 42.25 73 ER15b ExonRegion 0 45.51 0.00 0.00 1.36 12.04 1.83 3.97 0.00 4.94 0.00 4.83 17.32 28.14 10.56 14.51 14.86 8.25 0.00 0.00 0.00 4.41 2.08 0.00 74 ER15c ExonRegion 0 19.05 0.00 0.00 0.68 5.35 0.00 1.99 0.00 1.24 0.00 1.93 6.49 9.38 3.25 8.70 10.40 3.30 0.00 0.00 0.00 0.00 1.04 0.00 75 IG5_AR1 ActiveIntergenicRegion 0 18.09 3.03 2.92 5.70 11.61 1.46 3.78 5.09 8.52 3.70 1.51 3.84 4.33 3.42 9.53 6.15 3.65 0.00 2.76 1.21 3.26 0.48 2.69