Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PSMG1 Gene 0 57.51 130.78 96.05 36.33 50.85 47.86 38.60 39.19 29.98 50.87 162.30 147.17 162.86 145.04 163.20 84.98 103.47 24.03 44.60 57.77 36.15 76.46 45.40 2 331573 Transcript 0 3.73 14.13 5.32 3.19 6.25 7.40 3.92 3.97 3.77 5.14 1.21 3.14 2.24 2.00 1.62 1.10 0.98 1.50 1.89 4.34 0.16 1.29 1.44 3 380900 Transcript 0 17.63 12.50 4.61 2.06 0.00 0.00 11.61 1.81 10.76 1.67 6.84 12.00 12.82 18.54 9.64 0.00 8.98 0.00 17.88 0.00 3.15 3.00 3.84 4 431628 Transcript 0 0.00 5.92 1.63 7.69 0.00 2.90 0.00 10.10 1.74 1.67 2.53 0.00 0.00 2.24 0.00 0.00 0.00 2.07 0.00 2.81 0.00 0.00 3.76 5 411828 Transcript 0 0.00 0.00 0.75 0.02 0.01 0.50 1.72 0.38 1.70 1.37 3.44 0.48 1.05 4.85 3.13 2.82 1.52 0.38 0.44 2.83 0.30 1.73 3.58 6 440607 Transcript 0 14.46 31.52 31.45 11.58 17.39 24.76 17.43 15.84 10.09 18.92 91.81 38.97 50.81 47.91 54.64 39.63 46.21 11.70 19.64 22.34 10.65 22.22 22.51 7 481921 Transcript 0 23.42 43.44 7.99 11.44 25.99 11.48 11.31 10.51 9.04 17.72 25.04 24.06 19.06 28.93 22.64 26.68 21.49 8.39 10.73 6.97 14.97 42.92 14.70 8 ER1a ExonRegion 0 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1_Ab KnownBoundary 0 0.00 2.96 0.00 1.37 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.93 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 1 38.32 22.27 8.16 2.01 10.13 42.28 28.47 4.82 2.72 5.88 36.46 0.00 0.00 45.02 100.16 70.00 37.66 18.41 20.38 17.50 18.85 20.29 23.86 11 E1_Ac KnownBoundary 1 85.72 74.72 42.99 9.02 14.43 57.07 62.89 11.71 11.95 37.20 119.03 0.00 5.68 42.38 169.23 47.85 147.73 17.24 16.00 58.04 57.58 31.72 49.00 12 ER1c ExonRegion 1 12.81 18.01 21.32 5.40 2.21 14.89 9.74 7.04 4.76 19.59 66.07 5.04 14.21 50.20 48.11 23.96 60.97 8.50 20.18 17.09 28.78 8.95 13.12 13 E1_Ad KnownBoundary 1 20.45 30.32 57.66 21.58 3.48 21.69 14.04 14.70 16.55 46.79 129.61 24.46 61.85 54.92 42.03 49.82 85.09 29.72 51.86 24.99 29.71 28.23 30.39 14 ER1d ExonRegion 1 36.71 75.77 79.82 27.96 13.15 13.26 10.06 24.35 22.37 60.59 296.06 32.16 42.21 140.42 144.48 148.18 221.54 45.03 59.07 68.39 91.74 60.60 41.53 15 E1_Da KnownBoundary 0 0.00 2.70 5.09 1.96 3.82 0.00 0.00 4.52 0.00 4.35 0.00 0.00 5.84 0.00 4.45 4.27 4.11 0.00 0.00 5.18 2.72 0.00 0.00 16 E1a_E2a KnownJunction 1 68.68 124.32 121.99 29.37 24.11 7.27 9.36 35.61 27.66 83.81 483.07 12.60 57.95 228.97 283.33 179.35 341.65 62.10 85.27 124.89 160.25 88.18 65.90 17 E1a_E3b KnownJunction 0 0.00 5.92 1.63 7.69 0.00 2.90 0.00 10.10 1.74 1.67 2.53 0.00 0.00 2.24 0.00 0.00 0.00 2.07 0.00 2.81 0.00 0.00 3.76 18 ER1e ExonRegion 0 0.00 0.00 1.49 0.04 0.01 0.99 1.36 0.76 0.97 1.07 1.78 0.97 2.10 4.92 6.27 1.38 3.04 0.77 0.88 5.66 0.61 3.46 2.89 19 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 2.43 1.67 5.11 0.00 0.00 4.77 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 4.27 20 I1_AR1 ActiveIntronRegion 0 3.08 5.74 3.89 3.71 3.26 5.90 3.04 5.70 4.76 5.61 13.39 7.74 6.73 13.17 9.88 10.51 8.22 10.04 7.02 8.44 9.49 15.06 10.01 21 ER2a ExonRegion 1 63.65 120.51 136.92 49.61 75.87 64.66 53.60 70.50 62.06 117.36 535.32 131.62 134.52 348.44 364.83 340.46 338.39 106.32 153.11 148.56 115.48 183.19 162.89 22 E2_Da NovelBoundary 0 0.00 0.00 2.78 3.36 0.00 0.00 0.00 0.00 7.23 3.33 2.68 6.75 0.00 12.54 0.00 3.50 0.00 0.00 0.00 2.88 0.00 17.70 20.57 23 E2a_E3b KnownJunction 0 110.54 187.47 193.31 64.73 114.09 176.49 97.86 82.89 61.28 104.95 561.14 256.28 335.21 270.06 312.13 258.22 258.25 54.14 110.12 152.89 70.49 106.91 126.93 24 I2 Intron 0 4.19 5.41 1.75 2.50 2.74 3.76 7.59 4.93 3.14 2.33 12.01 11.34 11.90 11.40 3.78 7.10 7.44 4.65 2.39 10.02 3.76 24.47 11.23 25 I2_SR1 SilentIntronRegion 0 4.39 5.15 1.96 2.65 3.08 3.80 7.63 5.34 3.53 2.63 12.47 10.64 12.80 12.04 3.59 7.30 7.61 5.08 2.20 10.13 4.23 25.60 11.96 26 I2_AR1 ActiveIntronRegion 0 2.64 7.68 0.00 1.28 0.00 3.46 7.50 1.62 0.00 0.00 8.52 17.32 4.86 6.48 5.37 5.61 6.19 1.16 4.01 9.38 0.00 15.69 5.51 27 ER3a ExonRegion 0 28.93 63.04 62.90 23.17 34.78 49.51 34.86 31.69 20.17 37.85 183.63 77.93 101.62 95.82 109.28 79.26 92.43 23.40 39.29 44.68 21.30 44.45 45.03 28 ER3b ExonRegion 0 114.64 388.25 240.60 95.22 105.63 171.68 111.16 111.71 78.74 148.04 545.17 320.81 331.28 441.51 383.08 250.96 331.97 68.04 131.78 156.57 102.13 228.03 113.13 29 E3_Da NovelBoundary 0 14.30 2.63 3.61 12.19 15.62 8.12 1.85 15.81 16.23 9.86 24.27 31.06 20.45 40.44 29.42 19.74 48.34 5.80 8.85 36.56 13.71 46.97 3.84 30 E3a_E4a KnownJunction 0 168.55 487.48 275.36 83.34 77.67 103.12 110.50 143.64 62.12 181.37 393.05 421.64 312.97 473.37 435.38 200.72 395.98 21.47 110.50 150.33 83.89 185.11 110.97 31 E3a_E5b KnownJunction 0 17.63 12.50 4.61 2.06 0.00 0.00 11.61 1.81 10.76 1.67 6.84 12.00 12.82 18.54 9.64 0.00 8.98 0.00 17.88 0.00 3.15 3.00 3.84 32 E3a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 I3 Intron 0 14.85 11.80 5.63 6.59 8.23 9.41 16.54 12.76 10.70 7.89 15.88 24.41 21.01 24.77 14.78 20.35 27.12 6.14 4.36 10.92 3.39 37.76 13.54 34 I3_AR1 ActiveIntronRegion 0 14.10 11.27 7.15 7.79 9.31 10.16 18.79 14.44 11.03 8.91 18.60 26.72 19.52 27.42 16.04 24.08 30.60 7.34 5.14 12.73 2.70 41.02 14.26 35 I3_SR1 SilentIntronRegion 0 17.76 13.85 0.75 2.80 4.89 7.18 9.61 7.62 9.90 4.72 7.40 17.51 26.51 16.74 11.06 8.61 16.46 2.36 1.94 5.27 5.75 28.11 11.58 36 E4_Aa NovelBoundary 0 22.45 27.63 0.00 10.26 24.70 36.91 10.07 4.03 11.81 16.98 35.80 37.06 73.86 36.20 15.33 3.59 34.03 9.45 8.75 20.71 14.46 38.09 28.17 37 ER4a ExonRegion 0 138.98 406.88 316.79 95.14 156.34 131.01 100.49 101.02 63.52 138.70 513.17 431.23 497.66 478.06 463.42 215.22 370.70 33.85 115.38 138.26 108.82 193.01 115.09 38 E4_Da NovelBoundary 0 6.30 15.92 8.90 5.96 15.37 22.83 35.24 16.51 10.73 12.46 17.16 25.66 35.87 25.96 9.52 26.40 28.89 8.75 8.75 12.72 0.00 52.72 4.35 39 E4a_E5b KnownJunction 0 176.99 416.70 346.85 119.20 133.79 127.88 97.38 94.76 65.71 123.19 348.40 377.37 431.14 436.87 567.65 210.63 287.52 42.90 149.09 103.87 127.32 201.58 93.13 40 I4 Intron 0 12.60 8.93 5.73 7.43 5.59 10.92 13.14 8.34 7.12 9.64 16.56 23.55 30.50 26.70 11.47 16.46 17.94 3.37 4.99 11.13 7.60 35.06 16.57 41 I4_SR1 SilentIntronRegion 0 12.66 8.96 5.75 7.46 5.62 10.97 13.20 8.38 7.15 9.68 16.62 23.65 30.63 26.80 11.52 16.52 18.01 3.38 5.01 11.17 7.63 35.20 16.63 42 E5_Aa NovelBoundary 0 62.46 49.79 6.00 13.38 32.60 30.95 23.01 18.94 6.05 18.35 17.79 40.96 0.00 14.60 9.27 47.17 16.27 13.56 11.95 16.94 19.77 30.37 3.84 43 ER5a ExonRegion 0 23.42 43.44 7.99 11.44 25.99 11.48 11.31 10.51 9.04 17.72 25.04 24.06 19.06 28.93 22.64 26.68 21.49 8.39 10.73 6.97 14.97 42.92 14.70 44 E5_Ab KnownBoundary 0 29.12 61.57 8.93 15.45 68.00 18.74 13.96 12.98 9.29 18.88 19.64 43.21 20.45 40.91 22.99 21.02 17.02 9.37 8.28 5.24 6.18 52.35 25.87 45 ER5b ExonRegion 0 245.76 402.68 434.47 156.68 175.65 170.66 148.60 148.90 103.68 193.37 567.55 581.32 682.09 634.53 595.61 341.45 418.47 86.34 189.91 196.21 168.11 270.13 201.33 46 E5_Ac KnownBoundary 0 244.86 466.23 402.09 166.01 127.76 178.76 136.68 103.71 94.94 180.49 580.88 613.10 571.39 637.71 620.93 270.01 360.17 81.70 185.70 186.57 139.18 202.01 106.45 47 ER5c ExonRegion 0 242.66 608.42 428.86 145.45 198.12 140.83 130.57 133.74 107.76 171.89 578.75 609.26 594.00 558.06 647.02 312.98 347.12 97.31 171.55 218.93 136.73 270.74 179.26 48 E5a_E6a KnownJunction 0 278.79 1109.61 534.28 182.46 406.71 241.40 257.87 196.21 114.06 198.48 595.41 465.60 492.66 616.70 746.90 299.75 281.44 95.34 189.75 259.31 163.22 273.53 340.00 49 ER6a ExonRegion 0 129.79 480.92 306.94 116.22 198.85 116.16 123.16 131.72 92.01 142.28 467.44 658.58 738.53 407.25 571.36 198.16 215.98 59.06 105.16 178.43 78.35 206.15 125.80 50 E6_Da NovelBoundary 0 3.78 50.65 10.85 6.96 15.37 5.68 10.38 7.15 4.11 14.51 19.69 18.61 64.93 11.65 0.00 0.00 0.00 10.16 0.00 23.71 5.13 21.00 12.29 51 E6a_E7a KnownJunction 0 115.13 347.83 238.58 96.96 99.07 58.49 50.39 97.06 83.13 109.89 340.40 403.63 452.57 255.23 574.57 179.18 215.43 34.32 99.01 119.91 33.55 189.03 75.29 52 I6 Intron 0 18.26 19.29 13.45 9.49 15.39 16.80 15.23 9.72 5.75 7.43 15.28 8.56 19.83 13.57 10.45 7.37 8.42 5.35 4.81 13.46 5.07 13.93 7.70 53 I6_SR1 SilentIntronRegion 0 19.77 20.83 13.84 10.02 17.19 18.36 16.79 10.72 6.08 7.06 16.27 9.69 22.94 14.42 9.71 7.29 8.38 4.66 5.29 13.71 4.75 14.65 7.72 54 E7_Aa NovelBoundary 0 16.74 14.14 20.37 24.24 10.61 17.94 2.25 8.46 10.47 6.63 8.69 13.95 34.09 14.54 14.83 3.93 4.77 16.79 11.29 23.71 6.30 2.45 10.41 55 ER7a ExonRegion 0 107.66 198.23 206.11 78.83 63.97 83.96 56.79 91.05 73.88 95.07 259.50 337.81 315.80 188.70 358.25 89.76 145.94 18.40 50.75 123.49 28.15 258.52 47.10 56 E7_Da KnownBoundary 1 36.01 81.24 80.48 18.55 18.93 31.29 22.88 35.69 39.26 39.92 54.49 45.46 66.72 25.90 94.94 15.47 30.57 5.76 0.00 64.81 2.84 93.38 10.93 57 E7_Db KnownBoundary 1 67.49 85.64 66.56 29.77 10.53 10.33 36.26 31.30 21.53 29.55 93.34 71.57 52.27 23.25 63.42 7.43 38.99 6.01 16.94 55.67 2.97 54.25 3.76 58 ER7b ExonRegion 1 99.48 165.74 181.35 58.60 32.11 59.60 66.86 71.73 76.58 79.71 168.16 346.36 403.34 126.68 271.27 38.64 74.27 16.63 25.48 107.45 6.61 193.77 23.49 59 ER7c ExonRegion 1 165.98 177.78 95.35 41.51 82.19 49.98 53.08 37.29 40.64 43.76 93.73 283.85 380.94 130.43 228.91 38.50 66.02 9.94 24.70 65.81 10.70 73.72 22.54 60 E7_Dc KnownBoundary 0 3.56 38.35 14.93 9.36 11.21 28.51 3.97 13.23 4.31 11.77 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.70 0.00 2.57 3.93 61 ER7d ExonRegion 0 7.46 28.17 10.64 6.38 12.50 14.79 7.83 7.94 7.53 10.23 2.15 6.27 4.48 3.99 3.25 2.20 1.95 2.99 3.77 8.67 0.33 2.59 2.89