Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C21orf90 Gene 0 11.95 11.31 50.60 8.18 5.37 2.07 5.60 5.30 4.72 2.74 1.56 2.78 3.70 2.33 4.20 3.16 3.56 28.00 2.09 24.06 2.08 2.32 4.51 2 330490 Transcript 0 5.81 2.20 23.13 2.27 1.69 0.12 1.00 0.74 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 7.78 0.28 0.42 0.32 3 354333 Transcript 0 6.74 6.57 28.01 5.83 2.88 1.47 3.63 3.36 4.14 1.98 1.14 1.99 2.70 1.70 3.06 2.30 2.60 26.74 1.53 17.72 1.34 1.33 3.11 4 465978 Transcript 0 0.84 7.64 4.98 0.79 0.53 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 7.94 0.00 0.00 0.00 5 ER1a ExonRegion 0 7.19 3.34 53.55 5.13 3.27 0.47 1.29 2.94 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.54 0.00 5.20 1.12 1.68 1.15 6 E1_Ab KnownBoundary 0 3.78 11.12 47.46 1.47 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.17 0.00 5.31 0.00 0.00 4.27 7 E1_Ac KnownBoundary 0 3.26 2.89 24.22 3.90 8.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.84 0.00 8.31 0.00 3.12 0.00 8 ER1b ExonRegion 0 10.58 18.30 70.66 8.18 5.35 0.00 4.85 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.70 0.00 10.64 0.00 2.78 2.94 9 ER1c ExonRegion 0 15.58 11.33 43.07 5.01 7.79 0.00 3.17 4.20 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.85 0.00 12.87 1.04 3.25 0.60 10 E1_Da NovelBoundary 0 21.56 6.58 39.62 3.63 3.57 0.00 4.50 4.15 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.90 0.00 38.48 0.00 5.69 0.00 11 E1a_E2a KnownJunction 0 0.00 0.00 3.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E3a KnownJunction 0 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.87 0.00 5.56 0.00 0.00 0.00 13 E1a_E4a KnownJunction 0 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 Ix Intron 0 6.12 7.36 33.02 1.47 1.94 0.66 1.44 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.29 0.00 12.31 0.00 1.51 2.12 15 Ix_SR1 SilentIntronRegion 0 6.17 7.41 33.26 1.48 1.95 0.67 1.45 1.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.41 0.00 12.40 0.00 1.52 2.14 16 E2_Aa NovelBoundary 0 9.78 21.97 119.24 15.95 8.06 8.63 14.79 19.43 4.69 1.67 0.00 6.30 0.00 0.00 0.00 0.00 0.00 36.40 4.14 20.52 0.00 6.18 4.35 17 ER2a ExonRegion 0 8.58 5.47 24.36 3.96 3.51 0.00 2.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 25.91 0.00 0.00 0.12 18 E2_Da NovelBoundary 0 0.00 11.77 70.31 7.52 21.22 0.00 8.48 2.05 4.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.38 0.00 4.79 2.97 0.00 0.00 19 E2a_E3a KnownJunction 0 7.48 0.00 11.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 Ix Intron 0 11.71 10.20 49.56 7.72 4.16 0.00 3.89 3.12 0.64 0.59 0.00 0.62 0.00 0.23 0.00 0.00 0.00 22.72 0.55 22.81 0.38 1.44 2.03 21 Ix_AR1 ActiveIntronRegion 0 11.91 10.37 50.38 7.86 4.24 0.00 3.94 3.17 0.65 0.60 0.00 0.63 0.00 0.24 0.00 0.00 0.00 23.11 0.56 23.19 0.39 1.47 2.07 22 E3_Aa NovelBoundary 0 106.17 12.17 55.88 14.55 3.57 0.00 11.26 7.35 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 41.08 0.00 59.44 2.84 3.12 8.71 23 ER3a ExonRegion 0 8.29 6.04 23.58 5.65 7.03 0.00 3.83 0.00 1.75 0.68 0.00 1.41 0.00 0.00 0.00 0.00 0.00 12.49 0.00 15.52 0.39 0.82 1.09 24 E3_Da KnownBoundary 0 21.26 3.03 29.98 12.15 7.30 0.00 8.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.32 0.00 15.40 3.15 0.00 0.00 25 ER3b ExonRegion 0 13.48 13.14 56.02 9.82 5.76 2.93 7.25 6.72 6.56 3.96 2.28 3.97 5.40 3.40 6.13 4.60 5.20 36.61 3.05 29.88 2.69 2.67 6.21 26 Ix Intron 0 1.13 3.65 10.98 1.28 0.78 0.00 1.41 1.75 1.70 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 14.51 0.00 13.82 0.00 0.00 0.00 27 Ix_SR1 SilentIntronRegion 0 1.13 3.65 11.00 1.28 0.78 0.00 1.41 1.75 1.70 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 14.54 0.00 13.85 0.00 0.00 0.00 28 Ix Intron 0 1.76 7.78 14.42 2.19 0.33 0.08 0.72 0.86 1.30 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.59 0.13 16.01 0.18 0.00 0.00 29 Ix_SR1 SilentIntronRegion 0 1.76 7.79 14.44 2.20 0.33 0.08 0.72 0.86 1.30 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.61 0.13 16.03 0.18 0.00 0.00 30 E4_Aa NovelBoundary 0 7.33 31.05 15.94 4.96 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.47 0.00 20.07 0.00 0.00 0.00 31 ER4a ExonRegion 0 1.67 15.28 8.45 1.57 1.06 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.73 0.00 15.88 0.00 0.00 0.00