Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C21orf57 Gene 0 32.26 45.51 53.39 49.47 34.51 72.52 27.32 53.80 33.14 42.26 47.90 31.30 21.38 53.94 47.54 73.48 75.47 52.69 103.75 57.35 43.20 40.46 55.45 2 397701 Transcript 0 8.69 1.28 1.23 0.07 1.41 0.19 0.84 0.18 0.26 0.12 5.19 0.00 0.49 0.17 4.43 0.63 1.39 0.00 1.01 0.45 0.93 0.33 0.62 3 468924 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 397694 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 397692 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 339195 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 329319 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 423005 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 492864 Transcript 1 13.79 29.16 16.93 20.12 18.86 38.80 22.14 38.51 25.17 36.97 17.30 14.22 14.47 56.12 20.49 28.41 24.44 41.43 22.21 61.49 24.88 2.39 16.22 10 397691 Transcript 0 5.75 9.79 4.57 7.24 0.00 11.82 4.24 0.00 2.00 2.58 0.97 0.00 0.00 1.89 7.96 1.49 3.52 0.00 15.97 7.83 2.28 0.00 3.65 11 431786 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 453984 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 ER1a ExonRegion 0 8.69 1.28 1.23 0.07 1.41 0.19 0.84 0.18 0.26 0.12 5.19 0.00 0.49 0.17 4.43 0.63 1.39 0.00 1.01 0.45 0.93 0.33 0.62 14 E1_Ac KnownBoundary 1 116.47 76.43 39.18 18.25 113.58 206.53 74.77 32.78 17.59 27.53 57.96 0.00 6.82 53.62 108.66 159.45 80.60 39.88 114.64 47.55 69.56 43.97 128.30 15 ER1b ExonRegion 1 54.30 33.87 19.90 10.01 51.39 98.46 34.93 18.77 7.92 15.82 33.06 1.79 4.69 25.87 56.22 80.55 40.07 15.23 51.52 23.55 38.15 23.42 57.62 16 E1_Da KnownBoundary 0 0.00 0.00 6.56 4.13 0.00 11.07 0.00 0.00 3.47 1.67 5.11 0.00 0.00 7.06 5.69 3.25 18.33 12.56 37.18 7.41 11.12 2.27 4.35 17 E1a_E2a KnownJunction 1 242.12 215.69 103.99 49.01 206.28 370.24 163.45 94.55 49.33 64.17 117.50 17.41 0.00 78.82 131.90 330.17 189.90 124.69 513.90 106.29 101.69 163.68 360.23 18 ER1c ExonRegion 1 113.23 80.33 48.61 20.44 134.90 236.10 89.15 45.95 20.59 31.73 73.45 4.33 4.30 61.31 83.41 169.91 97.65 54.51 123.96 58.87 70.52 62.16 172.77 19 ER1d ExonRegion 1 143.03 123.30 69.27 34.57 140.69 294.95 110.38 65.32 33.02 41.47 84.54 4.10 0.00 72.23 92.38 252.16 140.03 84.02 310.99 76.60 83.05 113.61 260.59 20 ER1e ExonRegion 0 6.35 3.86 3.61 0.38 1.37 9.22 3.67 0.00 1.77 2.09 9.71 0.00 0.00 6.54 4.17 4.04 4.06 4.36 20.42 4.26 4.01 0.00 4.44 21 E1_Ae KnownBoundary 0 8.82 3.09 3.37 3.40 3.90 8.12 5.70 0.00 1.27 5.59 15.74 0.00 0.00 9.65 0.00 7.26 0.00 1.95 4.80 0.00 2.97 0.00 3.59 22 ER1f ExonRegion 0 1.42 2.94 5.95 2.40 3.29 3.90 0.96 0.97 0.82 2.02 8.48 0.95 1.01 7.87 6.00 7.30 4.29 6.96 5.75 4.66 4.93 1.70 5.67 23 E1_Af KnownBoundary 0 0.00 0.00 10.88 6.06 0.00 5.45 0.00 1.97 2.95 5.00 4.69 0.00 0.00 15.01 11.13 4.19 8.98 2.53 8.28 6.52 10.87 0.00 0.00 24 ER1g ExonRegion 0 34.26 45.87 21.84 26.62 21.61 77.78 22.94 9.04 11.83 10.33 22.12 3.95 0.00 29.64 33.08 35.21 33.26 14.44 42.73 17.74 24.79 17.69 28.98 25 E1b_E2a KnownJunction 0 6.08 8.81 21.64 25.30 27.25 22.83 5.92 13.27 17.42 15.53 6.74 0.00 0.00 23.90 9.15 23.41 14.03 11.86 7.34 5.43 8.28 5.51 7.68 26 E1c_E2a KnownJunction 0 3.04 11.45 5.47 7.66 0.00 14.48 4.50 0.00 1.53 2.87 0.00 0.00 0.00 0.00 9.64 0.00 3.74 0.00 19.20 9.27 2.35 0.00 4.35 27 ER1h ExonRegion 0 8.47 8.13 3.68 6.81 0.00 9.17 3.97 0.00 2.47 2.29 1.93 0.00 0.00 3.79 6.29 2.97 3.30 0.00 12.74 6.38 2.20 0.00 2.94 28 ER2a ExonRegion 1 163.63 201.64 134.33 101.13 114.88 339.95 85.85 115.73 71.25 73.84 110.22 7.99 23.55 107.19 125.59 381.62 232.60 142.44 730.86 94.23 116.40 215.62 367.54 29 E2_Ab KnownBoundary 1 78.90 137.74 145.83 129.69 105.09 280.86 48.67 124.50 84.52 85.93 127.19 18.91 66.88 98.95 69.35 243.61 235.90 147.08 563.40 73.06 95.32 142.80 211.10 30 ER2b ExonRegion 1 51.68 51.36 111.41 93.16 49.21 97.34 26.28 90.32 58.77 79.63 134.23 24.63 28.39 58.23 75.86 105.27 203.18 81.48 206.75 65.64 108.16 67.74 75.84 31 E2_Da KnownBoundary 1 72.09 46.24 154.81 110.11 43.46 63.77 13.60 102.69 58.97 94.93 172.31 18.16 33.60 104.72 102.85 137.83 230.48 47.51 205.09 97.79 118.55 83.58 73.50 32 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 2.68 0.00 0.00 0.00 0.00 4.36 0.00 2.20 0.00 3.26 0.00 3.12 0.00 33 E2a_E4a KnownJunction 0 0.00 3.29 1.09 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 34 ER2c ExonRegion 0 24.52 45.70 184.59 166.70 70.30 115.72 36.53 150.11 92.16 108.50 165.71 74.98 73.79 123.72 152.05 320.48 245.22 145.70 513.95 130.75 89.36 194.20 260.80 35 E2_Db NovelBoundary 0 0.00 28.48 8.16 5.36 125.98 101.08 32.28 7.27 4.98 13.97 12.32 0.00 25.49 2.12 4.45 20.25 26.18 22.59 23.53 8.76 0.00 5.76 25.87 36 E2b_E3a KnownJunction 1 7.56 48.28 173.26 143.24 71.82 176.89 70.62 143.51 70.11 82.14 141.56 206.77 63.96 93.71 123.12 138.51 158.39 71.42 119.34 110.07 74.57 100.73 110.29 37 E2b_E4a KnownJunction 0 3.41 23.61 28.47 2.86 8.23 21.52 2.12 8.34 1.33 9.75 2.63 0.00 0.00 4.59 5.32 45.12 21.22 23.38 20.24 5.82 3.15 5.69 7.68 38 I2_AR3 ActiveIntronRegion 0 26.02 17.19 5.92 11.94 16.16 23.87 9.68 16.58 10.08 11.87 5.58 1.43 5.18 1.98 0.90 12.67 11.02 13.77 4.60 18.17 4.24 1.00 5.60 39 E3_Aa NovelBoundary 0 0.00 18.81 16.11 18.75 11.80 22.54 20.23 34.63 6.39 14.16 5.32 5.70 13.47 7.77 0.00 19.40 9.54 32.62 8.85 46.66 5.93 3.12 8.54 40 ER3a ExonRegion 0 60.07 126.24 162.00 152.44 81.43 234.04 87.61 148.22 84.46 94.73 150.12 107.10 64.35 96.72 109.12 111.42 190.45 73.34 126.82 139.95 90.11 93.32 67.77 41 E3_Da KnownBoundary 1 51.94 69.79 17.56 27.00 66.64 56.79 35.64 36.39 33.62 47.09 23.80 62.72 32.95 62.39 48.83 34.86 29.17 39.84 35.77 105.02 26.50 10.96 11.44 42 E3a_E4a KnownJunction 0 163.14 208.84 179.83 141.64 21.14 95.74 7.15 119.94 43.92 50.58 90.76 44.11 26.78 35.67 80.47 92.37 154.75 45.35 152.66 67.18 99.21 105.14 56.34 43 ER3b ExonRegion 0 23.34 34.26 25.24 31.94 32.62 48.27 23.91 50.99 32.26 47.13 22.16 34.45 18.17 63.39 29.87 35.83 39.11 63.14 39.21 60.93 34.74 7.36 18.34 44 E3_Db KnownBoundary 0 24.23 50.06 25.37 31.63 48.47 66.21 16.38 57.91 30.73 56.95 31.69 23.41 48.37 68.10 30.66 47.34 38.15 68.52 34.82 80.54 37.13 0.00 8.28 45 ER3c ExonRegion 1 13.79 29.16 16.93 20.12 18.86 38.80 22.14 38.51 25.17 36.97 17.30 14.22 14.47 56.12 20.49 28.41 24.44 41.43 22.21 61.49 24.88 2.39 16.22 46 E3_Dc NovelBoundary 1 23.41 33.74 27.23 35.13 78.18 87.28 65.67 45.63 25.64 24.69 25.22 24.61 12.99 57.80 10.63 35.46 20.66 54.84 36.52 72.61 33.05 3.12 11.69 47 I3 Intron 0 4.72 5.65 10.44 5.72 2.52 11.21 2.28 13.41 7.35 12.25 8.25 2.08 5.78 5.84 5.54 20.49 16.55 27.84 14.85 17.67 13.03 4.57 11.39 48 I3_AR3 ActiveIntronRegion 1 10.58 5.12 8.55 2.91 3.42 5.10 3.55 23.77 9.80 14.73 14.53 1.87 11.07 6.71 2.87 18.81 12.90 13.73 13.56 20.90 13.59 4.34 10.60 49 I3_SR2 SilentIntronRegion 0 4.30 5.76 10.71 6.02 2.47 11.83 2.21 12.73 7.24 12.19 7.83 2.12 5.42 5.84 5.82 20.87 17.04 29.31 15.13 17.61 13.14 4.64 11.58 50 E4_Aa NovelBoundary 0 6.45 5.92 16.62 3.83 0.00 4.94 0.00 9.45 13.54 9.67 2.47 5.85 0.00 7.18 4.45 15.47 12.81 16.17 7.81 17.00 20.57 10.16 23.22 51 ER4a ExonRegion 0 60.31 113.00 116.98 96.23 36.22 72.42 25.08 69.61 41.05 40.66 61.94 87.41 55.94 50.30 74.00 94.03 105.05 42.90 105.81 55.87 67.96 77.97 52.99 52 E4_Da NovelBoundary 0 22.15 0.00 10.47 8.49 8.49 14.14 4.42 6.00 11.52 5.83 2.68 6.30 0.00 2.47 4.45 32.81 27.30 29.06 30.49 5.94 15.20 5.63 12.98 53 E4a_E5a KnownJunction 1 72.61 74.46 89.29 70.49 73.85 109.82 48.49 53.07 32.61 32.48 43.12 151.40 19.64 54.09 97.53 40.50 126.13 19.23 103.91 31.38 57.76 87.99 62.91 54 ER5a ExonRegion 1 41.84 32.39 32.88 25.07 11.37 27.90 9.81 19.67 10.38 13.28 16.64 20.47 3.21 19.75 35.46 28.66 65.37 24.19 38.55 23.68 35.63 27.88 26.49 55 ER5b ExonRegion 0 8.47 6.10 6.13 6.81 10.70 7.34 2.65 1.73 0.00 2.29 0.00 0.00 0.00 4.87 5.80 5.94 6.60 9.24 3.19 4.26 4.41 0.00 0.00 56 ER5c ExonRegion 0 1.33 1.36 4.04 1.56 6.34 0.95 0.83 0.32 0.00 1.19 0.00 0.00 0.00 1.02 3.01 2.86 0.00 3.49 2.12 3.62 1.39 0.00 0.00 57 ER5d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 IG8 Intergenic 0 2.86 6.21 8.18 4.47 11.46 5.32 2.45 22.37 5.33 18.21 2.46 1.28 1.82 3.22 5.25 4.94 4.20 24.40 10.33 22.20 2.30 1.53 5.10 59 IG8_AR1 ActiveIntergenicRegion 0 2.12 10.85 4.90 9.31 16.05 11.31 2.65 30.25 4.94 17.01 3.87 0.00 0.00 3.25 2.90 8.92 3.30 32.95 0.53 20.21 5.14 1.39 11.75 60 IG8_SR2 SilentIntergenicRegion 0 2.86 6.49 9.15 4.67 13.38 5.49 2.75 25.02 6.25 20.15 2.63 1.59 2.25 3.02 6.09 5.36 4.45 26.78 11.40 25.26 2.41 1.69 5.56