Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	NDUFV3	Gene	0	62.62	57.76	101.65	72.66	60.24	47.00	39.43	62.73	53.67	57.96	61.03	59.05	58.32	106.15	133.59	118.45	92.96	90.33	110.27	82.89	102.52	45.18	59.74
2	460259	Transcript	0	0.75	1.84	3.82	3.18	1.97	1.68	0.89	4.28	3.76	2.58	2.02	2.18	1.88	4.00	7.61	4.29	7.47	2.49	6.45	4.50	1.48	2.53	0.86
3	354250	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	340344	Transcript	1	49.52	66.70	62.13	65.40	76.04	59.30	58.30	53.26	50.21	40.20	21.59	38.25	58.53	43.26	63.32	48.55	42.34	44.88	65.26	79.40	47.60	31.26	37.71
5	398198	Transcript	0	3.90	2.12	0.02	0.03	8.62	5.81	3.93	0.03	0.03	0.03	0.52	0.96	5.14	2.32	0.61	3.90	0.89	2.00	0.05	4.01	0.61	0.57	19.36
6	460740	Transcript	0	11.34	0.00	1.54	0.00	0.00	0.00	0.00	0.00	1.50	1.18	2.32	0.00	0.00	0.00	0.00	8.72	0.00	2.11	0.00	0.00	2.72	2.45	0.00
7	418336	Transcript	0	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	3.12	0.00
8	456957	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER1a	ExonRegion	0	1.46	1.87	8.42	4.67	2.46	4.65	3.04	6.14	5.48	2.32	5.79	3.45	1.77	11.45	17.17	5.94	16.67	5.20	9.56	8.81	3.58	3.36	2.05
10	E1a_E2a	KnownJunction	0	0.00	0.00	3.37	2.53	0.00	0.00	0.00	7.11	0.00	0.00	0.00	0.00	0.00	0.00	4.82	8.37	9.54	1.99	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	1.70	6.55	8.78	9.26	9.34	5.40	1.42	10.81	12.55	6.10	5.69	7.68	8.29	12.09	22.26	11.39	18.61	3.10	29.04	13.50	5.28	8.76	3.12
12	E2_Da	NovelBoundary	0	7.56	8.49	6.42	4.79	16.30	19.76	6.14	7.39	9.26	2.77	10.16	6.00	12.99	19.13	20.52	20.93	8.98	2.36	9.60	11.63	2.35	0.00	0.00
13	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	3.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.07	0.00	2.88	0.00
14	ER3a	ExonRegion	0	1.36	2.61	2.37	2.61	0.00	0.05	0.87	1.65	2.72	2.35	0.62	1.93	1.24	0.45	1.41	0.06	0.02	2.07	0.08	1.62	0.01	0.21	0.00
15	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00
16	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER4b	ExonRegion	0	1.30	2.35	0.75	0.73	2.06	2.26	1.94	0.00	0.48	0.00	0.45	0.00	0.00	0.12	2.45	0.23	2.54	0.00	0.00	1.31	0.85	0.00	1.13
18	ER4c	ExonRegion	0	30.11	39.60	19.05	16.15	24.48	42.54	19.56	10.80	8.37	15.14	18.22	0.00	2.46	21.93	48.89	39.83	17.25	25.96	40.77	42.98	26.00	9.74	22.54
19	E4_Ad	KnownBoundary	1	92.02	112.28	55.79	51.84	76.40	102.38	42.40	30.15	22.34	40.02	45.85	0.00	12.50	45.50	110.39	119.97	40.49	110.31	146.36	94.09	75.86	25.04	75.29
20	ER4d	ExonRegion	1	282.59	426.10	265.39	190.74	120.90	265.78	145.39	159.45	129.69	191.92	129.50	3.10	19.31	157.65	359.13	593.83	172.36	222.19	801.23	364.08	200.98	108.48	336.64
21	E4a_E5a	KnownJunction	1	170.10	378.16	426.80	301.79	98.56	349.29	183.58	252.98	214.64	296.93	87.44	5.70	12.34	142.21	261.95	730.15	176.34	360.11	1130.57	299.20	140.30	83.03	417.25
22	E4a_E6a	KnownJunction	0	11.34	0.00	1.54	0.00	0.00	0.00	0.00	0.00	1.50	1.18	2.32	0.00	0.00	0.00	0.00	8.72	0.00	2.11	0.00	0.00	2.72	2.45	0.00
23	ER5a	ExonRegion	0	66.00	95.37	226.24	158.64	83.39	153.86	88.88	119.00	120.86	160.85	44.46	20.85	22.67	58.44	91.87	200.67	98.04	116.19	428.38	142.48	96.16	38.30	121.72
24	E5_Ab	KnownBoundary	1	72.01	30.46	201.12	93.89	124.45	116.92	46.15	64.69	64.26	98.66	60.33	46.97	52.43	55.98	61.56	35.03	102.66	45.14	59.39	135.31	164.08	16.66	4.18
25	ER5b	ExonRegion	1	35.98	20.74	271.25	135.17	51.23	31.20	10.44	164.26	128.55	194.69	165.94	65.15	43.82	93.59	141.26	68.26	219.81	99.38	138.17	229.72	235.07	46.42	35.53
26	E5_Da	NovelBoundary	0	0.00	30.65	46.18	42.92	0.00	6.47	12.98	18.15	12.90	31.27	7.42	5.70	6.66	10.71	15.20	15.04	9.54	22.34	9.04	72.10	33.61	2.69	3.50
27	E5a_E6a	KnownJunction	0	45.05	5.39	37.08	32.53	0.00	0.00	2.25	13.84	27.89	33.42	112.92	82.53	55.19	93.00	104.21	86.13	138.10	42.45	42.07	33.30	108.91	62.15	65.56
28	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E5a_E8a	KnownJunction	1	3.78	12.76	419.80	216.66	14.69	9.60	0.00	295.32	195.19	243.61	111.13	17.86	51.30	36.08	131.16	68.10	206.64	169.01	364.34	335.69	137.64	30.00	31.16
30	E5a_E9a	KnownJunction	0	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	3.12	0.00
31	I5	Intron	0	19.44	18.55	22.62	36.18	20.46	9.34	19.92	15.25	12.92	12.94	7.90	21.93	30.18	16.80	14.78	22.09	14.15	17.65	16.16	28.49	6.76	5.82	10.51
32	I5_AR1	ActiveIntronRegion	0	45.57	34.67	28.23	47.83	37.11	10.07	29.27	29.40	17.28	17.28	8.94	35.51	51.50	16.80	17.11	33.92	17.64	25.49	22.55	45.80	4.14	6.92	17.40
33	I5_AR2	ActiveIntronRegion	0	0.00	7.68	0.00	0.00	10.43	3.52	10.97	0.00	0.00	0.00	1.74	13.96	18.47	13.89	22.85	3.03	12.80	0.00	3.25	12.16	0.00	0.00	5.51
34	I5_SR1	SilentIntronRegion	0	32.31	15.13	23.82	27.81	22.67	10.42	21.14	13.43	7.25	11.94	4.24	20.10	42.60	19.38	13.56	18.86	7.82	15.57	17.10	24.94	6.05	3.01	8.87
35	I5_AR3	ActiveIntronRegion	0	11.49	10.46	44.64	25.12	16.05	14.41	19.86	11.61	11.12	15.89	9.94	30.31	38.86	16.94	12.43	23.35	4.72	12.67	25.03	38.30	6.30	5.95	11.75
36	I5_SR2	SilentIntronRegion	0	9.28	13.20	20.39	30.29	13.21	7.76	13.58	9.17	11.38	9.60	7.36	13.40	20.93	16.61	13.62	20.56	12.57	18.87	14.82	20.31	7.86	4.35	10.15
37	I5_AR4	ActiveIntronRegion	0	28.44	26.53	30.17	57.37	34.27	15.74	32.89	29.29	16.99	22.32	12.25	39.20	50.11	15.88	15.36	21.27	20.61	10.50	14.61	37.98	5.06	9.66	7.63
38	I5_SR3	SilentIntronRegion	0	20.92	19.15	18.62	28.91	10.01	7.93	22.86	13.26	13.32	14.57	7.18	26.04	9.79	21.78	17.73	22.40	11.64	11.94	20.04	43.17	5.54	9.14	11.01
39	I5_AR5	ActiveIntronRegion	1	30.93	20.31	18.93	43.61	32.69	8.04	31.30	13.23	21.42	17.35	4.78	37.02	24.65	13.81	16.03	19.28	15.32	19.43	18.99	49.29	14.13	13.41	5.57
40	E6_Aa	NovelBoundary	1	113.43	81.70	38.70	49.84	41.26	19.59	45.13	31.18	29.72	22.54	9.79	43.21	27.43	34.49	14.34	27.17	12.81	18.16	29.27	48.70	24.03	5.39	14.17
41	ER6a	ExonRegion	0	110.33	58.74	104.07	80.15	87.15	31.39	44.95	59.83	53.51	62.46	121.72	135.44	113.15	216.20	200.43	214.41	168.73	136.73	80.13	81.57	175.29	80.46	96.17
42	E6_Da	KnownBoundary	1	52.23	58.21	98.43	93.53	55.94	36.80	16.12	41.69	47.11	51.33	47.91	137.14	114.28	204.78	252.80	121.51	101.92	134.27	68.05	53.82	85.69	35.21	62.74
43	ER6b	ExonRegion	0	63.23	37.58	107.24	77.94	59.04	31.05	36.15	58.48	39.74	48.83	71.92	74.96	56.61	174.41	233.82	126.21	126.68	126.71	51.13	63.39	152.24	56.12	56.55
44	E6_Db	NovelBoundary	0	0.00	39.01	33.44	52.71	8.40	0.00	9.67	26.86	16.44	17.14	2.05	6.30	6.82	4.94	24.60	19.48	7.95	71.34	8.28	41.93	2.66	5.39	8.45
45	E6b_E8a	KnownJunction	1	73.42	8.16	119.78	69.85	3.82	2.73	4.33	28.01	27.46	29.71	27.64	68.57	78.24	103.71	174.42	193.28	55.17	132.57	66.07	43.02	91.37	63.93	52.07
46	I6	Intron	0	16.43	25.93	42.11	44.40	26.59	8.46	17.08	26.18	19.40	20.06	6.89	10.19	20.30	8.39	15.09	19.84	11.76	52.46	24.85	41.65	11.73	6.72	10.13
47	I6_SR1	SilentIntronRegion	0	7.27	18.36	26.44	22.76	18.63	7.78	18.66	17.27	14.85	14.56	3.56	6.48	6.76	4.50	13.68	14.66	9.66	28.38	20.07	30.30	4.94	6.62	5.53
48	I6_AR1	ActiveIntronRegion	0	2.12	12.43	25.05	39.68	24.08	6.72	10.30	27.46	18.12	16.57	11.60	8.66	9.38	4.87	14.18	8.92	8.07	53.17	27.61	50.35	17.63	4.17	6.20
49	I6_AR2	ActiveIntronRegion	0	2.72	17.72	23.46	42.25	21.79	3.67	6.62	31.61	16.23	12.62	11.60	7.42	9.38	3.25	7.05	13.59	1.89	55.70	26.85	46.50	16.37	2.08	7.13
50	I6_AR3	ActiveIntronRegion	0	3.17	16.27	22.67	44.63	25.75	4.13	7.45	29.82	12.51	15.20	11.84	8.66	8.21	2.84	7.25	20.80	0.00	56.13	12.74	43.08	13.50	2.08	12.11
51	I6_AR4	ActiveIntronRegion	0	4.23	27.57	19.88	48.76	29.14	3.26	11.77	29.19	17.29	19.12	13.32	10.10	4.69	1.62	9.99	20.14	0.37	51.12	21.24	34.99	10.53	1.85	14.03
52	I6_AR5	ActiveIntronRegion	0	4.23	25.76	22.47	45.43	21.41	1.83	11.25	29.67	17.09	18.54	10.95	8.66	4.69	1.62	14.99	17.34	3.30	43.73	17.52	29.43	8.81	0.00	14.68
53	I6_AR6	ActiveIntronRegion	0	5.64	27.11	26.35	41.57	23.19	1.83	13.68	29.38	18.73	19.69	7.73	8.66	9.38	0.81	11.61	16.35	3.30	43.42	15.93	31.21	8.81	0.00	14.68
54	I6_AR7	ActiveIntronRegion	0	6.02	26.59	26.30	39.73	18.73	1.83	16.19	24.07	19.86	17.38	7.14	12.66	11.91	2.00	14.51	11.66	5.33	31.70	19.60	29.79	7.29	0.00	12.88
55	I6_AR8	ActiveIntronRegion	0	6.35	27.79	26.35	39.30	10.70	0.92	15.67	23.33	19.76	18.73	5.80	8.66	13.29	4.60	14.51	8.92	11.55	25.87	25.48	23.40	5.14	0.00	10.77
56	I6_AR9	ActiveIntronRegion	0	9.80	26.75	25.39	44.76	30.09	6.87	15.07	21.74	15.31	19.65	7.05	8.76	22.11	7.83	15.19	18.08	9.43	36.39	26.90	43.86	10.25	5.58	12.45
57	I6_AR10	ActiveIntronRegion	0	26.31	31.51	62.58	59.58	31.94	10.97	19.56	34.30	25.39	25.33	8.68	13.66	29.05	11.77	17.08	25.15	15.58	75.26	28.39	50.04	16.24	8.61	11.75
58	E7_Aa	NovelBoundary	0	37.27	41.97	98.25	70.62	53.99	10.79	53.66	19.02	39.32	25.81	17.69	0.00	12.17	12.77	32.63	20.42	3.74	32.04	12.89	45.51	8.53	9.37	0.00
59	ER7a	ExonRegion	1	11.69	6.36	0.06	0.09	25.87	17.44	11.79	0.08	0.10	0.09	1.56	2.89	15.41	6.96	1.84	11.70	2.67	6.01	0.15	12.02	1.82	1.72	20.18
60	E7_Da	NovelBoundary	0	7.26	30.52	65.96	88.90	29.46	8.29	30.91	34.05	26.22	27.32	2.68	0.00	13.64	12.13	8.90	7.86	12.62	19.07	7.72	74.40	9.02	11.57	4.35
61	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	37.90
62	I7	Intron	0	14.56	18.82	33.79	42.71	29.84	9.86	16.64	16.50	16.74	19.20	5.50	12.22	17.40	6.74	9.14	11.75	9.13	16.51	14.87	25.41	4.88	8.40	9.06
63	I7_AR1	ActiveIntronRegion	0	25.21	32.58	57.61	74.43	46.45	16.01	24.40	27.99	30.25	32.52	8.70	18.58	27.32	6.55	14.13	15.67	9.56	24.25	18.17	38.92	6.95	14.25	15.52
64	E8_Aa	NovelBoundary	1	101.28	18.48	75.93	100.35	11.63	26.01	14.35	31.30	32.61	18.13	0.00	6.30	25.81	4.83	23.24	33.15	8.42	79.88	8.56	34.07	10.50	5.51	7.68
65	ER8a	ExonRegion	0	105.36	155.68	417.79	241.11	117.63	157.93	81.54	248.16	204.86	204.57	118.50	72.67	107.83	174.30	339.09	253.70	177.70	273.51	500.94	271.92	235.12	90.19	128.57
66	E8_Da	KnownBoundary	1	286.42	328.69	155.61	125.82	203.31	248.04	138.72	117.64	98.87	88.19	47.06	34.36	156.48	96.24	242.04	122.79	86.11	129.50	184.85	157.68	177.49	54.07	77.17
67	E8_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.55	1.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.40	0.00	0.00	0.00	0.00	0.00
68	E8_Dc	KnownBoundary	1	20.89	43.15	6.68	5.83	4.33	4.77	5.92	12.36	9.72	6.61	12.95	6.30	6.17	23.13	55.26	24.35	70.59	6.80	40.85	29.85	22.92	2.51	8.54
69	E8c_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	ER8b	ExonRegion	1	236.70	329.78	176.25	138.11	173.92	239.92	126.22	140.87	124.75	114.50	62.50	45.46	152.43	158.62	283.84	151.08	144.69	153.67	230.41	182.62	196.50	54.87	78.31
71	ER8c	ExonRegion	1	136.16	193.53	103.54	95.86	104.35	133.26	65.54	84.98	83.78	78.95	43.81	26.70	101.62	116.12	203.57	109.97	105.08	107.17	167.76	135.11	134.79	40.98	55.31
72	ER8d	ExonRegion	1	49.52	66.70	62.13	65.40	76.04	59.30	58.30	53.26	50.21	40.20	21.59	38.25	58.53	43.26	63.32	48.55	42.34	44.88	65.26	79.40	47.60	31.26	37.71
73	E8_Dd	NovelBoundary	0	3.19	40.12	77.11	70.32	32.09	21.98	34.80	47.40	47.19	40.19	12.00	31.66	38.63	11.89	33.62	19.99	7.76	15.21	12.05	29.59	8.09	8.08	0.00
74	I8	Intron	0	21.01	29.74	39.23	40.37	39.76	31.16	20.21	34.59	27.56	25.50	6.38	11.55	14.03	14.00	19.31	16.23	12.91	21.03	20.36	24.47	11.00	9.55	12.43
75	I8_SR1	SilentIntronRegion	0	21.02	29.76	39.26	40.40	39.78	31.18	20.23	34.61	27.58	25.51	6.38	11.56	14.04	14.01	19.32	16.23	12.92	21.04	20.38	24.49	11.01	9.56	12.44
76	Ix	Intron	0	7.35	7.83	9.42	9.79	15.23	6.65	10.16	16.79	8.70	13.44	2.58	5.69	4.00	4.69	7.00	10.10	6.30	22.11	9.76	19.80	5.11	1.66	11.99
77	Ix_AR1	ActiveIntronRegion	0	4.93	7.48	12.10	12.74	10.87	6.57	13.09	23.08	15.28	21.45	3.81	9.26	5.27	9.98	13.91	13.84	10.05	25.18	8.65	36.47	6.85	0.75	12.57
78	Ix_SR2	SilentIntronRegion	0	4.56	4.76	8.43	10.93	17.59	4.58	13.19	11.23	6.53	11.32	2.71	8.76	5.91	3.43	10.38	9.98	4.35	16.41	10.98	22.33	3.37	1.58	14.13
79	Ix_AR2	ActiveIntronRegion	0	10.19	11.88	16.56	15.02	28.60	6.27	23.74	27.13	12.71	19.34	1.72	14.89	5.61	6.36	9.29	16.06	10.88	26.12	12.86	36.08	3.75	2.92	17.89
80	Ix_SR3	SilentIntronRegion	0	13.61	12.66	22.38	16.45	26.08	9.87	22.15	27.85	18.43	23.29	3.60	16.49	6.86	7.57	14.21	20.15	10.86	60.24	22.95	44.67	10.09	4.06	22.21
81	Ix_SR4	SilentIntronRegion	0	10.51	10.52	10.69	10.83	19.98	7.25	10.87	16.88	8.20	14.26	2.67	6.02	4.35	5.15	6.86	11.70	6.59	25.81	11.57	21.08	4.99	1.50	11.97
82	Ix_AR3	ActiveIntronRegion	0	5.84	9.45	14.85	12.69	15.44	8.41	6.21	33.98	7.66	14.62	4.84	2.79	1.19	3.16	9.81	12.62	11.73	27.99	20.15	13.29	2.76	2.50	16.71
83	ER9a	ExonRegion	0	0.06	0.00	0.01	0.00	0.38	0.00	0.67	0.00	0.00	1.13	0.00	1.90	0.00	0.00	0.00	0.06	0.00	0.02	0.00	0.12	0.84	0.58	0.00
84	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
85	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	1.27	1.23	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00
86	ER10b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00