Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MORC3 Gene 0 113.64 118.93 32.78 83.99 115.52 105.36 65.75 86.21 75.82 72.03 79.99 110.34 118.85 70.79 37.84 50.57 47.25 42.07 28.03 68.82 43.65 98.72 60.67 2 492336 Transcript 0 30.04 21.77 11.81 10.51 20.22 7.36 12.68 11.05 9.77 7.94 2.68 8.84 12.32 2.79 11.47 12.06 6.00 12.14 5.09 9.85 4.76 7.98 16.32 3 290384 Transcript 0 4.94 4.75 1.50 3.33 5.05 6.52 3.53 5.57 9.88 6.63 5.15 7.22 6.77 8.84 4.84 5.28 3.30 4.72 2.12 5.91 6.12 6.02 5.87 4 400485 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 487909 Transcript 0 0.00 0.00 0.00 0.00 3.14 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 6 485933 Transcript 0 14.40 4.91 7.29 7.37 9.17 13.30 8.36 13.06 9.04 3.19 5.26 2.73 10.02 1.80 1.87 2.14 4.43 4.91 6.09 9.06 4.22 1.58 7.51 7 485299 Transcript 0 2.22 4.00 0.61 4.66 3.68 2.65 2.69 1.01 1.09 1.68 1.01 5.39 3.76 0.41 1.07 2.51 1.73 1.03 0.63 3.77 0.14 0.41 1.35 8 484028 Transcript 0 46.75 65.12 11.61 47.03 29.77 7.22 15.18 11.06 16.63 22.37 6.84 14.94 11.02 8.39 8.70 9.26 4.57 2.61 7.66 13.12 3.15 18.67 7.84 9 ER1a ExonRegion 0 6.60 9.69 0.17 5.39 2.86 21.58 8.16 1.53 4.28 2.32 4.85 0.00 0.00 6.19 3.17 3.59 9.67 1.55 0.22 4.55 5.48 6.78 10.11 10 E1_Ab KnownBoundary 0 27.34 41.83 0.00 16.65 19.95 85.63 31.53 6.57 11.26 6.50 12.58 0.00 0.00 20.25 13.72 7.60 33.47 12.73 0.00 15.02 30.64 22.11 32.01 11 ER1b ExonRegion 1 66.61 73.38 2.65 21.69 26.01 50.86 37.97 12.44 24.63 15.79 38.58 0.00 3.13 35.21 15.11 30.92 39.11 28.90 14.51 45.15 40.34 53.88 60.85 12 E1a_E2b KnownJunction 0 58.23 43.54 1.27 21.84 16.21 2.67 18.24 6.78 21.30 9.00 20.74 5.25 0.00 21.72 4.45 15.89 8.98 28.85 4.80 29.40 15.88 27.43 22.71 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 3.14 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 14 Ix_SR1 SilentIntronRegion 0 15.96 10.69 3.90 7.33 12.17 6.21 9.08 10.41 11.07 8.32 2.38 4.28 11.78 3.44 4.01 8.33 4.05 10.45 9.74 21.45 12.54 4.04 12.95 15 Ix_AR2 ActiveIntronRegion 0 25.40 6.10 3.68 8.18 47.02 20.96 14.94 10.37 14.82 8.03 3.87 8.04 12.73 8.12 2.49 5.94 3.30 5.54 12.74 26.75 8.81 0.00 31.88 16 Ix_AR3 ActiveIntronRegion 0 9.22 6.27 2.57 9.31 13.16 10.35 10.77 8.70 10.97 6.26 3.06 5.15 21.11 5.26 3.97 4.22 3.79 11.96 9.88 14.81 14.13 1.15 17.32 17 ER2a ExonRegion 0 14.40 4.91 7.29 7.37 9.17 13.30 8.36 13.06 9.04 3.19 5.26 2.73 10.02 1.80 1.87 2.14 4.43 4.91 6.09 9.06 4.22 1.58 7.51 18 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2b ExonRegion 0 37.69 17.03 6.26 20.75 11.26 14.42 6.64 9.10 22.40 14.13 22.28 0.00 4.49 6.45 5.48 5.12 20.77 17.99 6.68 21.90 31.07 6.71 14.72 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3a ExonRegion 0 18.07 8.95 1.91 18.53 1.88 12.52 6.77 9.53 19.05 10.21 18.49 0.00 7.54 24.89 10.94 18.52 17.15 9.19 6.94 35.53 17.82 38.84 38.10 22 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3b ExonRegion 0 33.47 30.50 1.23 5.88 8.86 35.64 21.60 2.81 6.95 4.01 1.93 0.00 0.00 4.26 0.00 8.36 0.00 15.47 0.00 5.45 0.00 6.90 8.81 24 ER4a ExonRegion 0 40.92 64.89 4.34 5.97 19.84 59.53 40.67 10.85 11.72 8.75 6.72 26.88 19.33 18.18 4.02 12.47 5.54 15.74 4.21 11.81 7.13 8.13 21.53 25 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER4b ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 1.32 1.73 8.65 3.44 0.00 4.33 4.69 1.62 5.80 0.00 0.00 1.85 0.00 0.00 0.00 2.08 0.00 28 ER5a ExonRegion 0 14.82 14.24 4.49 8.63 15.16 19.56 9.27 14.98 21.00 16.44 15.46 17.32 15.63 24.90 8.70 15.85 9.90 12.32 6.37 17.73 18.36 15.97 17.62 29 ER5b ExonRegion 0 61.48 68.30 26.83 43.02 63.98 77.31 42.69 70.56 64.35 54.81 81.16 102.73 83.08 76.63 19.66 67.61 53.44 48.73 16.66 72.37 63.28 63.07 66.66 30 E5_Da KnownBoundary 0 52.68 40.32 13.72 9.32 15.28 2.90 6.05 7.93 1.22 7.84 2.68 6.30 20.45 0.00 0.00 3.33 12.72 0.00 0.00 5.94 3.03 12.43 7.43 31 E5a_E6a KnownJunction 1 105.43 95.25 26.23 54.64 117.32 160.48 56.40 95.42 91.17 74.54 113.56 130.09 100.64 111.31 25.34 47.77 103.60 62.80 7.81 132.56 129.73 130.79 120.36 32 ER5c ExonRegion 0 30.04 21.77 11.81 10.51 20.22 7.36 12.68 11.05 9.77 7.94 2.68 8.84 12.32 2.79 11.47 12.06 6.00 12.14 5.09 9.85 4.76 7.98 16.32 33 ER6a ExonRegion 1 77.58 95.85 27.31 74.15 118.58 128.09 81.16 91.14 92.19 74.63 132.46 157.24 145.58 141.53 28.44 99.69 99.25 77.32 51.03 111.76 93.66 109.68 114.07 34 E6a_E7a KnownJunction 1 44.60 106.76 19.60 41.85 133.79 140.88 65.32 74.26 83.56 64.41 118.56 93.33 91.55 93.35 19.28 67.67 81.91 45.76 4.05 72.99 84.82 165.45 74.44 35 ER7a ExonRegion 1 80.59 118.33 24.51 79.88 109.44 109.15 67.58 78.05 82.58 69.93 113.88 170.80 159.32 118.99 23.19 80.16 88.41 74.34 36.84 100.81 87.02 130.13 88.62 36 E7a_E8a KnownJunction 0 52.60 112.41 19.99 68.06 81.24 162.24 72.16 66.83 99.91 71.91 130.35 154.85 133.92 117.02 31.65 49.13 86.49 43.03 36.42 92.17 50.29 124.49 68.97 37 I7 Intron 0 35.45 6.61 1.83 5.08 8.70 2.75 4.30 5.15 2.30 2.56 1.93 6.30 11.59 2.72 5.72 13.37 4.95 2.76 3.19 10.64 0.00 2.60 4.40 38 I7_SR1 SilentIntronRegion 0 35.79 6.66 1.84 5.12 8.78 2.78 4.34 5.20 2.32 2.58 1.95 6.37 11.70 2.75 5.77 13.51 5.00 2.79 3.22 10.74 0.00 2.63 4.45 39 ER8a ExonRegion 1 58.45 139.72 23.29 74.52 97.37 106.96 74.65 63.92 110.55 74.78 112.46 176.79 173.34 95.35 20.02 60.76 72.40 53.00 29.89 89.29 39.43 125.81 75.69 40 E8_Da NovelBoundary 0 0.00 9.14 11.59 18.21 14.52 0.00 2.25 15.73 2.95 14.83 4.74 11.70 6.66 2.47 9.64 8.29 4.77 0.00 13.08 20.52 0.00 8.39 15.54 41 E8a_E10a KnownJunction 1 71.79 196.68 21.91 72.75 71.56 97.61 42.79 69.62 100.35 63.02 100.03 271.59 195.93 93.47 23.24 53.75 71.90 34.74 12.61 85.97 22.49 89.65 87.24 42 E8a_E11a NovelJunction 0 13.85 24.86 4.23 2.06 14.09 14.03 3.53 8.67 4.63 1.07 2.68 11.10 6.49 2.47 0.00 0.00 0.00 1.87 0.00 6.01 0.00 8.27 0.00 43 ER9a ExonRegion 0 4.44 8.00 1.21 9.32 7.37 5.30 5.38 2.03 2.17 3.35 2.03 10.78 7.52 0.81 2.15 5.03 3.46 2.06 1.27 7.54 0.29 0.82 2.70 44 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER10a ExonRegion 1 65.50 221.81 22.07 75.57 89.26 84.19 55.84 72.33 113.16 67.53 98.08 140.40 143.72 83.08 16.82 45.64 49.38 30.02 24.96 84.63 18.35 106.54 50.46 46 E10_Da NovelBoundary 0 24.60 2.63 16.53 37.36 14.69 11.53 5.74 5.79 12.76 10.18 0.00 7.65 13.31 4.59 8.90 4.19 0.00 2.11 0.00 5.94 0.00 6.06 7.94 47 E10a_E11a KnownJunction 1 125.43 312.84 23.92 57.44 121.39 114.14 75.92 81.45 94.18 68.23 80.39 133.54 159.89 121.67 4.45 51.95 44.69 28.93 14.12 73.25 14.70 155.53 50.96 48 E11_Aa NovelBoundary 0 18.97 34.80 3.96 36.93 21.90 2.90 1.63 4.11 1.50 10.40 0.00 0.00 25.49 0.00 0.00 0.00 0.00 1.53 0.00 9.52 2.84 5.76 7.26 49 ER11a ExonRegion 0 97.60 246.76 30.90 89.95 126.04 92.88 77.23 88.30 102.61 82.27 103.70 230.29 203.46 105.74 31.47 83.39 64.10 48.66 33.28 110.35 47.64 162.49 76.32 50 E11_Da NovelBoundary 0 0.00 2.57 2.78 26.70 4.33 0.00 0.00 5.09 0.00 5.88 0.00 25.21 6.66 2.12 0.00 4.36 3.93 2.11 0.00 3.00 0.00 2.69 0.00 51 E11a_E12a KnownJunction 0 80.31 235.42 31.25 118.10 167.57 114.65 75.30 97.96 101.07 80.96 90.60 176.91 203.07 148.57 37.09 81.43 39.74 68.73 46.97 117.48 73.02 167.66 108.58 52 E12_Aa NovelBoundary 0 36.67 3.29 17.86 24.21 4.33 8.69 7.64 6.90 3.44 3.60 7.48 7.65 0.00 2.47 5.19 7.95 0.00 7.46 3.48 8.18 8.34 0.00 7.77 53 ER12a ExonRegion 0 132.52 225.36 33.18 103.36 118.07 92.08 67.55 88.50 92.76 78.58 106.72 195.56 178.62 134.65 34.85 87.44 70.81 77.99 53.08 114.98 88.13 141.37 89.15 54 E12_Da NovelBoundary 0 141.95 281.27 30.19 81.71 138.03 101.25 109.21 75.45 77.11 55.47 100.24 176.16 176.77 104.07 51.18 110.06 46.28 68.27 38.97 66.47 78.58 117.63 85.28 55 E12_Db NovelBoundary 0 49.27 36.64 20.14 25.24 8.66 2.50 34.40 10.47 5.41 8.62 12.85 24.01 21.91 2.47 8.90 3.76 11.97 13.72 21.55 18.28 0.00 0.00 7.34 56 E12b_E13a KnownJunction 0 98.46 224.37 25.55 86.94 102.97 72.86 82.58 53.85 77.46 75.94 111.13 272.04 208.43 95.59 41.78 74.85 59.56 73.50 35.58 108.79 115.09 140.35 106.02 57 ER12b ExonRegion 0 96.53 219.55 26.17 77.15 99.19 70.27 80.53 62.16 77.72 59.19 109.28 198.69 193.46 91.12 34.30 93.20 53.88 84.20 31.97 80.55 92.63 111.91 100.37 58 I12 Intron 0 39.71 17.61 1.76 8.79 10.30 3.53 5.73 2.48 0.00 0.00 4.65 8.94 13.14 8.14 4.52 2.86 6.35 5.30 6.13 14.33 1.06 6.01 7.06 59 I12_SR1 SilentIntronRegion 0 40.48 17.95 1.79 8.96 10.50 3.60 5.84 2.53 0.00 0.00 4.72 9.12 13.39 8.29 4.60 2.91 6.44 5.40 6.25 14.59 1.08 6.13 7.20 60 E13_Aa NovelBoundary 0 108.09 38.87 18.69 29.87 21.39 12.66 12.23 9.65 12.53 11.77 17.06 49.67 52.76 2.47 5.07 6.66 8.70 6.22 22.02 28.32 6.24 17.15 12.29 61 ER13a ExonRegion 0 130.83 325.75 25.80 77.50 100.72 90.39 93.40 75.08 91.74 71.48 132.83 194.25 195.98 151.65 45.76 121.50 93.22 82.98 34.10 108.23 128.05 133.87 130.43 62 E13_Da NovelBoundary 0 16.23 18.15 27.59 60.17 82.00 11.36 27.56 33.02 21.70 26.75 4.74 7.65 32.47 16.83 9.15 3.67 23.47 11.03 18.73 45.25 2.84 19.35 19.12 63 E13a_E14b KnownJunction 0 96.76 322.57 10.91 62.23 129.71 105.00 82.41 85.43 75.03 47.28 149.25 142.10 154.37 121.08 31.28 85.02 63.77 59.82 31.44 75.49 99.46 95.10 97.31 64 I13 Intron 0 52.04 22.00 13.34 40.23 33.47 12.12 22.32 16.28 21.98 19.46 8.69 22.51 34.61 9.89 13.62 31.32 9.28 12.79 25.96 17.64 14.24 28.98 24.34 65 I13_SR1 SilentIntronRegion 0 52.33 22.12 13.41 40.45 33.64 12.19 22.44 16.37 22.10 19.57 8.74 22.63 34.80 9.95 13.69 31.49 9.33 12.85 26.10 17.73 14.31 29.14 24.48 66 Ix Intron 0 26.61 12.54 6.93 12.53 24.12 9.57 10.68 17.72 13.97 11.76 6.42 3.56 6.41 6.75 5.42 10.58 3.13 14.39 9.82 13.12 9.93 16.80 11.84 67 Ix_SR1 SilentIntronRegion 0 31.96 15.06 8.32 15.05 28.97 11.49 12.83 21.28 16.78 14.12 7.71 4.28 7.70 8.11 6.52 12.70 3.76 17.28 11.80 15.76 11.93 20.18 14.22 68 E14_Aa NovelBoundary 0 269.68 325.27 683.68 697.55 274.96 164.45 357.23 724.05 725.37 649.20 190.73 87.03 176.61 108.36 118.43 318.38 295.75 1015.90 232.19 305.97 134.86 142.61 250.28 69 ER14a ExonRegion 0 46.75 65.12 11.61 47.03 29.77 7.22 15.18 11.06 16.63 22.37 6.84 14.94 11.02 8.39 8.70 9.26 4.57 2.61 7.66 13.12 3.15 18.67 7.84 70 E14_Ab KnownBoundary 0 178.99 116.30 33.74 88.80 46.52 34.98 41.20 27.15 29.63 41.90 22.85 12.60 26.46 21.37 19.16 21.87 16.64 5.55 11.29 17.07 9.45 39.99 22.11 71 ER14b ExonRegion 0 186.35 298.89 38.07 126.20 203.36 207.99 136.37 110.01 113.30 103.07 178.94 138.83 189.06 135.74 41.13 105.02 109.30 66.31 39.43 100.43 111.31 142.93 113.88 72 E14a_E15a KnownJunction 0 170.18 299.55 34.27 109.58 226.15 268.94 122.24 87.04 125.69 105.00 149.93 122.14 217.36 131.91 34.49 108.09 96.03 73.17 42.17 91.27 117.93 156.39 113.36 73 E15_Aa NovelBoundary 0 24.30 6.05 8.28 23.81 20.37 13.34 9.58 0.00 4.51 4.49 2.68 5.70 6.17 0.00 4.45 19.05 13.56 12.97 9.22 15.98 5.31 5.88 36.54 74 ER15a ExonRegion 0 117.85 244.58 29.89 125.80 172.06 129.00 80.93 121.00 133.25 112.23 195.64 157.29 233.69 146.70 47.88 118.00 105.53 88.95 53.62 121.19 100.84 176.61 125.77 75 E15_Da NovelBoundary 0 10.37 8.81 1.12 9.36 19.95 7.21 22.08 3.53 5.82 3.28 2.42 0.00 7.47 0.00 0.00 20.59 18.14 1.58 9.60 5.50 6.18 5.27 23.39 76 E15a_E16a KnownJunction 0 103.57 264.16 29.36 109.34 105.94 85.58 95.79 108.81 130.93 124.91 184.68 143.15 256.64 135.85 34.49 94.59 74.43 57.70 48.28 120.29 87.23 96.57 80.07 77 I15_AR2 ActiveIntronRegion 0 17.85 5.93 2.52 7.37 9.94 2.11 16.32 4.85 7.94 6.02 0.49 4.93 19.71 2.30 3.91 6.68 3.03 1.82 2.20 8.85 1.92 1.74 3.56 78 ER16a ExonRegion 0 163.72 249.43 34.35 151.55 229.63 194.78 137.36 120.03 126.46 122.03 185.47 161.64 282.39 144.42 48.98 103.19 78.55 99.63 56.61 140.54 91.30 179.07 123.66 79 E16_Da KnownBoundary 0 290.64 277.91 24.25 196.28 390.75 404.94 236.40 142.86 150.64 120.69 214.05 298.60 400.62 199.25 85.05 133.04 116.88 136.17 83.96 202.62 139.99 250.02 188.99 80 ER16b ExonRegion 0 138.81 160.44 46.63 128.50 152.89 169.16 98.64 105.10 116.44 98.79 144.83 188.94 226.83 137.28 53.22 90.94 101.51 93.97 53.94 123.61 104.90 128.06 116.84 81 E16b_E17a KnownJunction 1 193.59 197.99 35.78 127.36 173.94 146.39 99.50 140.06 92.62 136.08 151.56 242.93 243.49 130.44 93.45 126.80 56.10 100.73 44.61 122.85 64.80 137.90 100.39 82 ER17a ExonRegion 0 198.39 151.89 53.22 140.51 192.35 210.43 118.10 158.95 137.81 134.30 186.81 203.87 180.57 126.73 78.81 105.02 101.97 83.87 55.84 119.46 97.77 146.89 110.92 83 E17a_E18a KnownJunction 0 257.68 253.64 50.71 174.00 109.51 224.30 111.03 170.83 148.35 160.29 174.89 183.51 277.74 123.49 82.08 92.37 90.14 80.46 78.97 127.13 86.36 139.12 108.41 84 ER18a ExonRegion 0 223.87 160.38 63.43 143.95 217.23 179.42 103.65 174.69 117.89 130.83 95.45 155.11 157.49 78.29 73.72 49.50 42.53 34.89 34.29 83.28 29.61 173.01 61.73 85 IG9_AR1 ActiveIntergenicRegion 0 8.94 13.62 1.90 2.35 19.47 17.15 18.20 2.46 1.85 2.09 0.00 1.62 9.15 0.00 14.87 0.22 0.00 0.88 4.46 5.00 0.33 3.54 2.35 86 IG9_SR1 SilentIntergenicRegion 0 7.87 16.87 5.14 13.24 21.28 6.95 14.80 12.24 8.80 11.33 2.74 5.51 9.49 2.37 7.14 4.20 2.29 3.26 3.02 12.46 1.37 6.91 6.61 87 IG9_AR2 ActiveIntergenicRegion 0 11.68 22.93 6.75 13.16 11.19 7.52 11.33 9.42 10.96 18.56 2.45 2.03 9.95 4.28 3.46 2.52 8.52 9.46 6.47 12.27 3.35 6.89 7.16