Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NCRNA00158 Gene 0 2.29 2.00 1.79 10.12 1.62 1.34 3.00 1.68 3.15 1.85 110.44 38.79 56.61 41.32 35.21 36.50 99.58 0.07 1.52 2.52 0.00 0.31 0.07 2 332587 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 441013 Transcript 0 0.00 0.00 0.00 8.36 0.00 0.00 0.00 4.11 2.81 1.21 5.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 439840 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 440205 Transcript 1 1.77 0.18 0.78 1.36 0.06 0.77 0.98 0.48 0.97 0.75 107.52 11.12 36.00 31.44 30.34 41.57 104.53 0.00 0.55 1.43 0.00 0.00 0.26 6 IG36 Intergenic 0 0.32 0.88 0.35 4.09 0.96 0.55 1.68 0.35 1.67 0.87 3.80 5.80 16.06 1.69 1.96 2.61 22.14 0.03 0.33 1.33 0.00 0.06 0.13 7 IG36_SR1 SilentIntergenicRegion 0 0.32 0.88 0.35 4.09 0.96 0.55 1.68 0.35 1.67 0.87 3.80 5.80 16.07 1.69 1.96 2.61 22.15 0.03 0.33 1.33 0.00 0.06 0.13 8 ER1a ExonRegion 1 0.40 0.20 0.89 4.41 0.26 1.61 2.19 0.25 1.78 0.67 3.19 4.81 18.50 0.91 1.06 2.31 15.65 0.00 0.31 2.48 0.00 0.00 0.00 9 E1_Da NovelBoundary 1 0.00 0.00 0.00 10.42 4.33 0.00 2.25 0.00 4.80 0.00 8.00 6.30 33.76 0.00 4.45 0.00 36.28 0.00 0.00 5.50 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 1.33 1.28 0.84 15.36 2.47 0.77 3.60 2.96 3.47 1.07 12.90 1.12 10.15 6.12 3.09 11.23 27.57 0.58 0.67 2.12 0.00 0.00 0.00 12 E2a_E3b KnownJunction 1 0.00 0.00 3.49 2.66 4.33 0.00 0.00 0.00 1.79 1.40 9.00 6.30 0.00 0.00 4.45 0.00 37.40 0.00 0.00 2.75 0.00 0.00 0.00 13 E2a_E4a KnownJunction 0 0.00 0.00 0.00 8.36 0.00 0.00 0.00 4.11 2.81 1.21 5.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E3_Aa NovelBoundary 0 3.26 0.00 1.83 1.63 0.00 0.00 2.25 0.00 1.48 0.00 80.28 33.01 39.77 46.68 19.04 56.14 72.74 0.00 0.00 3.00 0.00 0.00 0.00 15 ER3a ExonRegion 1 3.54 0.00 0.06 0.92 0.04 1.53 0.00 0.96 0.02 0.04 190.41 15.12 39.67 56.82 52.27 59.25 164.83 0.00 0.00 0.38 0.00 0.00 0.00 16 E3_Ab KnownBoundary 0 0.00 0.00 0.00 1.90 0.00 0.00 0.00 2.55 0.00 0.00 237.32 49.37 105.51 102.89 55.88 104.33 230.95 0.00 0.00 2.56 0.00 0.00 0.00 17 ER3b ExonRegion 0 3.39 3.21 1.82 11.38 0.82 0.00 4.42 0.76 2.47 1.79 324.71 77.75 133.69 113.65 72.10 95.36 299.96 0.00 1.71 4.59 0.00 0.00 0.00 18 E3a_E4a KnownJunction 1 0.00 6.18 5.00 8.06 0.00 0.00 1.85 0.00 0.00 1.32 508.66 111.79 93.18 101.65 62.43 137.66 478.45 0.00 0.00 0.00 0.00 0.00 0.00 19 I3 Intron 0 0.00 0.44 0.18 3.44 0.74 0.80 0.68 0.61 1.38 0.54 2.21 18.50 7.01 0.87 0.62 0.82 4.56 0.05 0.06 0.59 0.00 0.00 0.00 20 I3_SR1 SilentIntronRegion 0 0.00 0.44 0.18 3.44 0.74 0.80 0.68 0.61 1.38 0.54 2.21 18.51 7.01 0.87 0.62 0.82 4.56 0.05 0.06 0.59 0.00 0.00 0.00 21 E4_Aa NovelBoundary 1 0.00 0.00 1.45 16.12 0.00 12.44 1.85 0.00 3.88 2.93 17.27 12.60 6.01 0.00 19.28 4.02 27.68 1.99 0.00 0.00 0.00 0.00 0.00 22 ER4a ExonRegion 0 0.09 6.76 1.90 24.43 3.14 2.05 6.29 1.58 6.51 4.72 367.17 77.98 102.07 137.37 116.21 144.48 314.29 0.00 5.65 2.33 0.00 1.14 0.00 23 E4_Da NovelBoundary 1 0.00 2.76 0.00 3.36 0.00 0.00 1.68 1.89 0.00 1.67 4.53 7.05 45.13 4.89 15.20 4.36 15.80 0.00 0.00 3.26 0.00 0.00 0.00 24 E4a_E5a KnownJunction 0 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 1.39 0.00 23.06 0.00 0.00 7.59 0.00 0.00 22.63 0.00 3.95 0.00 0.00 0.00 0.00 25 E4a_E6a KnownJunction 1 0.00 0.00 0.00 24.91 12.65 4.54 7.86 2.46 7.23 4.46 278.65 25.21 189.92 99.24 102.11 131.85 219.64 0.00 4.80 0.00 0.00 0.00 0.00 26 I4 Intron 1 0.17 0.34 0.37 0.93 0.22 0.10 0.95 0.07 0.38 0.30 4.46 9.28 32.44 2.04 2.02 4.61 20.85 0.06 0.13 0.61 0.01 0.01 0.00 27 I4_SR1 SilentIntronRegion 0 0.17 0.34 0.37 0.93 0.22 0.10 0.95 0.07 0.38 0.30 4.46 9.28 32.45 2.04 2.02 4.61 20.85 0.06 0.13 0.61 0.01 0.01 0.00 28 E5_Aa NovelBoundary 1 0.00 5.85 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 23.27 13.35 75.97 0.00 0.00 3.85 34.32 0.00 4.05 3.00 0.00 0.00 0.00 29 ER5a ExonRegion 0 1.06 0.52 0.59 2.68 0.58 1.89 0.86 0.00 0.34 0.90 34.76 16.53 43.42 8.13 7.33 15.84 60.90 0.00 2.64 3.45 0.00 0.00 0.00 30 E5_Da KnownBoundary 1 0.00 0.00 3.49 1.37 3.31 0.00 3.89 0.00 0.00 0.00 36.27 6.30 68.02 9.77 10.26 18.54 53.86 0.00 13.18 2.94 0.00 0.00 0.00 31 ER5b ExonRegion 0 0.00 0.35 1.51 1.80 0.07 0.00 1.96 0.00 1.92 1.47 24.63 7.12 32.32 6.07 8.42 23.90 44.24 0.00 1.11 2.48 0.00 0.00 0.51 32 E5_Db NovelBoundary 0 0.00 0.00 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 21.48 18.61 8.28 2.47 6.30 26.75 52.36 0.00 0.00 5.05 0.00 0.00 0.00 33 I5 Intron 0 0.22 0.81 0.85 2.56 0.86 0.38 1.32 0.27 0.42 0.39 12.87 9.68 33.29 4.80 3.46 7.60 26.10 0.00 0.45 1.31 0.06 0.04 0.03 34 I5_SR1 SilentIntronRegion 0 0.22 0.81 0.85 2.56 0.86 0.38 1.32 0.27 0.42 0.39 12.88 9.68 33.32 4.80 3.46 7.60 26.12 0.00 0.45 1.31 0.06 0.04 0.03 35 E6_Aa NovelBoundary 0 10.67 2.70 1.83 14.22 8.15 0.00 0.00 0.00 3.59 2.82 35.80 19.51 47.72 12.48 10.63 20.25 30.39 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6a ExonRegion 0 6.45 4.80 3.95 19.24 3.91 1.98 4.44 4.40 6.03 3.69 247.28 105.79 115.42 98.95 87.26 65.08 181.36 0.00 2.36 2.30 0.00 1.02 0.00 37 IG35 Intergenic 0 0.34 0.57 0.33 2.17 0.43 0.14 0.96 0.19 0.70 0.25 10.37 8.10 24.56 4.00 4.62 4.79 13.72 0.08 0.15 0.32 0.05 0.05 0.05 38 IG35_AR1 ActiveIntergenicRegion 0 1.23 5.17 0.00 10.14 0.00 0.00 1.42 0.00 1.76 0.00 49.68 29.24 62.70 24.62 24.84 20.13 25.54 0.00 0.00 2.69 0.00 0.00 0.00 39 IG35_SR1 SilentIntergenicRegion 0 0.34 0.55 0.33 2.13 0.43 0.14 0.96 0.19 0.70 0.25 10.17 7.99 24.37 3.90 4.51 4.71 13.67 0.08 0.15 0.31 0.05 0.05 0.05