Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RCAN1 Gene 0 31.87 34.68 44.31 28.47 46.23 66.62 38.95 77.46 59.59 63.87 29.93 23.80 28.78 24.32 21.06 26.54 19.49 28.73 8.33 33.88 27.42 135.39 141.14 2 313806 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 443408 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 463276 Transcript 0 0.18 0.52 0.16 0.18 1.13 0.00 1.39 0.22 0.48 0.00 0.00 0.00 1.00 0.00 0.00 0.77 0.85 0.00 0.00 0.18 0.00 5.72 2.53 5 399265 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 489903 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 399272 Transcript 0 0.00 0.00 0.00 0.00 1.20 0.00 0.59 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 487990 Transcript 0 0.00 0.13 0.44 0.75 0.17 0.91 1.72 0.48 1.37 1.06 0.00 1.07 0.00 0.25 0.13 0.73 0.00 0.74 0.00 0.79 0.14 0.00 0.36 9 381132 Transcript 0 0.48 0.00 0.45 0.00 0.00 3.56 1.78 1.15 0.52 0.47 0.00 0.00 1.60 0.60 1.83 0.00 0.00 0.00 0.00 0.93 0.99 6.16 12.18 10 481448 Transcript 0 2.21 0.00 2.21 1.04 1.05 0.47 1.46 2.33 4.04 1.30 0.00 3.02 0.73 0.11 0.70 0.49 0.06 0.00 0.00 0.36 2.19 14.13 19.36 11 492600 Transcript 0 4.49 0.71 2.77 1.18 2.83 2.77 3.38 5.21 3.91 3.39 1.35 0.41 2.24 1.04 0.57 2.76 1.15 3.68 0.30 1.64 7.66 24.44 64.33 12 381135 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 482533 Transcript 0 7.26 5.39 5.24 3.66 5.00 2.44 9.53 4.59 4.68 2.05 2.09 7.75 8.69 4.19 6.05 5.47 4.89 3.97 3.66 6.10 4.08 6.31 20.77 14 399268 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 487434 Transcript 0 1.00 0.72 0.00 0.96 1.59 0.65 0.63 1.83 1.31 1.22 0.00 0.42 0.46 0.00 0.00 0.68 0.00 0.00 0.00 2.52 0.00 0.49 1.04 16 IG48_AR5 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.32 4.45 0.17 0.00 1.32 0.00 0.00 0.00 0.00 3.31 12.84 17 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 2.73 0.16 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 2.62 0.00 1.49 0.00 0.38 1.51 0.00 2.65 19 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 12.89 2.25 0.00 1.48 4.19 0.00 0.00 0.00 0.00 0.00 0.00 8.79 6.18 0.00 2.49 5.68 0.00 3.93 20 ER1c ExonRegion 0 1.00 12.97 6.67 6.73 4.37 22.64 5.62 13.61 16.63 23.42 16.04 3.90 8.71 14.48 8.81 18.31 15.53 21.06 4.65 15.29 9.91 3.28 7.51 21 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E1a_E8c KnownJunction 0 0.00 43.15 30.81 33.93 27.16 104.20 20.45 60.46 78.12 88.97 54.38 12.60 31.98 39.79 23.73 35.29 39.46 51.40 16.09 47.04 17.79 14.14 33.04 23 ER2a ExonRegion 0 0.00 0.97 1.66 0.56 0.00 2.77 0.40 5.61 5.06 2.02 0.00 1.08 0.03 0.75 2.11 1.79 1.99 1.36 0.00 1.94 0.00 1.20 0.94 24 E2a_E8c KnownJunction 0 0.00 3.09 0.00 0.00 0.00 0.00 0.00 8.63 4.77 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 0.00 0.00 2.33 0.00 25 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 2.39 0.00 1.18 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E3a_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER4a ExonRegion 0 0.00 0.25 0.88 1.50 0.33 1.81 3.43 0.95 2.74 2.11 0.00 2.14 0.00 0.50 0.25 1.47 0.00 1.48 0.00 1.58 0.27 0.00 0.73 28 E4a_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER5a ExonRegion 0 0.55 1.56 0.47 0.53 0.00 0.00 2.40 0.67 1.43 0.00 0.00 0.00 3.00 0.01 0.00 2.31 2.56 0.00 0.00 0.55 0.00 0.01 0.76 30 E5a_E8c KnownJunction 0 0.00 0.00 0.00 0.00 3.40 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.15 6.83 31 ER6a ExonRegion 0 0.48 0.00 0.45 0.00 0.00 3.56 1.78 1.15 0.52 0.47 0.00 0.00 1.60 0.60 1.83 0.00 0.00 0.00 0.00 0.93 0.99 6.16 12.18 32 E6_Ab KnownBoundary 0 3.78 0.00 1.83 0.00 0.00 5.17 1.68 0.00 1.79 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.39 0.00 3.12 7.77 33 E6_Ac KnownBoundary 0 27.56 0.00 1.12 0.00 0.00 2.33 0.00 5.87 5.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 20.32 5.45 24.67 34 ER6b ExonRegion 0 11.72 0.08 1.60 0.00 0.00 3.17 0.00 3.52 4.85 1.15 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 5.56 10.59 3.93 17.96 35 ER6c ExonRegion 0 54.82 5.14 15.18 0.64 19.86 28.08 13.02 11.13 16.98 4.83 0.00 2.26 0.00 0.85 1.95 0.00 3.18 0.87 0.00 2.50 77.83 243.01 403.93 36 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.08 4.10 37 E6a_E8c KnownJunction 0 10.52 0.00 15.91 0.00 4.33 2.84 1.99 10.27 9.49 3.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 145.61 147.63 86.05 38 ER7a ExonRegion 0 4.42 0.00 4.42 2.07 2.10 0.94 2.93 4.66 5.10 2.60 0.00 6.05 1.45 0.23 1.39 0.98 0.12 0.00 0.00 0.72 4.38 20.18 34.62 39 E7_Ab KnownBoundary 0 11.11 0.00 7.63 1.43 4.07 0.00 0.00 3.78 7.20 4.38 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 0.00 5.93 16.53 55.06 40 ER7b ExonRegion 0 2.78 0.47 3.27 1.39 3.32 0.42 2.74 3.18 4.21 2.00 0.00 0.02 1.08 0.01 1.02 2.78 0.60 0.00 0.00 0.49 5.75 15.83 37.22 41 E7_Da NovelBoundary 0 5.93 0.00 2.42 1.80 0.00 0.00 6.49 0.00 4.37 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.69 3.15 36.25 59.33 42 E7a_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 I7_AR2 ActiveIntronRegion 0 0.65 0.00 0.90 0.00 7.06 0.00 2.04 0.05 1.82 0.97 0.00 2.53 0.00 0.61 0.00 0.45 0.00 0.49 0.00 4.31 10.62 12.30 39.07 44 I7_SR2 SilentIntronRegion 0 4.23 0.00 4.90 0.00 3.88 0.00 1.92 1.73 1.24 0.86 1.74 0.00 0.00 1.62 0.00 2.97 0.00 1.85 0.00 0.00 10.03 24.06 31.86 45 ER8a ExonRegion 0 0.00 0.11 0.00 0.00 0.00 0.00 1.67 0.00 1.56 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.36 46 ER8b ExonRegion 0 0.42 2.03 0.00 0.00 0.00 0.00 3.97 0.69 2.47 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.33 47 ER8c ExonRegion 0 14.51 10.68 10.47 7.31 10.00 4.88 17.39 9.18 7.80 4.09 4.17 15.50 17.38 8.21 12.10 10.93 9.77 7.95 7.32 12.19 8.15 12.63 31.18 48 E8_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 7.47 0.00 4.11 2.51 4.28 4.46 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 25.90 24.24 49 ER8d ExonRegion 0 21.40 40.37 80.60 41.14 58.77 110.98 51.05 135.93 128.07 144.06 88.35 39.52 73.84 62.42 31.93 77.51 63.34 111.71 20.20 83.21 103.75 443.48 574.01 50 E8c_E9a KnownJunction 0 10.37 38.74 111.23 54.07 78.61 201.65 75.25 169.80 133.82 162.09 119.24 59.42 143.50 54.39 29.92 44.60 60.96 120.59 32.28 124.70 110.89 277.82 235.69 51 ER8e ExonRegion 0 4.70 31.41 98.85 48.46 71.06 174.82 63.11 152.10 132.57 153.43 114.04 53.88 129.24 52.15 28.69 54.16 58.32 122.16 23.01 103.07 105.04 263.68 220.90 52 ER9a ExonRegion 1 32.89 50.65 78.36 36.46 56.65 142.92 45.83 130.16 116.51 137.89 77.29 43.12 144.47 63.13 36.19 47.91 54.55 90.76 17.48 76.96 105.66 290.84 238.25 53 E9_Ab KnownBoundary 1 85.27 80.05 68.03 34.66 77.42 128.34 51.36 173.91 120.66 131.68 35.27 59.57 144.63 90.29 27.57 76.65 34.03 99.28 25.60 65.32 77.22 280.14 312.60 54 ER9b ExonRegion 1 47.60 62.12 77.77 49.62 54.95 108.30 46.69 139.82 112.62 129.75 77.71 72.62 152.26 67.77 36.13 78.20 50.06 112.62 13.35 94.83 98.48 298.32 293.14 55 E9_Da KnownBoundary 0 3.33 0.00 0.00 0.00 3.14 0.00 0.00 2.30 3.33 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 3.76 5.69 2.78 32.15 32.95 56 E9a_E10a KnownJunction 0 68.38 123.07 124.92 59.73 65.53 143.16 88.41 169.06 127.81 154.59 94.44 61.52 147.72 77.87 23.98 85.45 46.66 93.27 12.99 98.94 99.46 236.79 318.92 57 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER9c ExonRegion 0 4.49 0.71 2.77 1.18 2.83 2.77 3.38 5.21 3.91 3.39 1.35 0.41 2.24 1.04 0.57 2.76 1.15 3.68 0.30 1.64 7.66 24.44 64.33 59 I9 Intron 0 10.11 2.89 4.85 2.84 5.61 4.02 4.97 7.02 7.46 6.13 0.86 0.78 2.49 1.56 1.57 3.60 1.85 2.48 0.59 1.88 7.49 33.15 70.40 60 I9_AR1 ActiveIntronRegion 0 12.43 3.79 3.70 3.19 6.42 4.93 5.20 7.24 7.38 7.28 0.96 0.51 2.82 1.53 1.50 2.83 1.77 1.63 0.66 2.02 7.65 35.94 74.22 61 I9_SR1 SilentIntronRegion 0 7.68 1.56 6.68 2.34 4.58 2.66 4.41 6.86 8.12 4.73 0.81 1.08 2.11 1.63 1.66 5.23 2.20 3.77 0.58 1.48 6.97 30.39 65.79 62 I9_AR2 ActiveIntronRegion 0 3.05 3.06 3.88 2.79 4.52 4.19 6.62 5.90 3.52 4.10 0.07 1.61 1.74 1.52 1.77 0.00 0.00 2.21 0.00 3.39 9.77 23.95 64.29 63 E10_Aa NovelBoundary 0 14.15 0.00 6.09 6.53 4.33 2.90 3.75 2.34 6.02 9.11 2.63 0.00 0.00 0.00 11.62 0.00 0.00 4.23 0.00 0.00 3.15 31.05 74.18 64 ER10a ExonRegion 0 78.90 89.61 111.63 73.59 122.12 170.03 98.52 199.95 147.35 159.63 70.78 55.59 58.11 56.20 51.24 58.54 41.39 59.40 18.76 78.26 48.92 304.18 274.83 65 ER10b ExonRegion 0 3.88 1.36 7.76 2.04 11.15 6.11 7.06 6.05 7.82 7.07 0.64 0.00 3.91 3.79 7.25 3.47 2.20 0.00 1.06 2.13 6.24 10.76 9.30 66 ER11a ExonRegion 0 2.01 1.45 0.00 1.93 3.17 1.30 1.26 3.67 2.62 2.43 0.00 0.85 0.92 0.00 0.00 1.35 0.00 0.00 0.00 5.05 0.00 0.99 2.09