Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C21orf59 Gene 0 76.91 102.38 77.38 56.99 58.42 95.93 43.26 45.15 42.49 62.44 95.93 80.28 48.49 96.72 122.26 71.02 66.70 33.46 46.21 54.85 28.72 53.00 32.85 2 290155 Transcript 0 2.45 0.79 1.77 1.04 0.64 6.39 2.05 0.60 0.71 2.09 2.80 0.00 0.00 3.57 2.90 2.16 2.38 1.13 1.79 6.92 4.32 5.12 6.24 3 300260 Transcript 0 0.00 3.35 10.35 5.26 0.00 0.00 2.25 0.00 0.00 1.50 2.53 0.00 6.82 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 382549 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 458138 Transcript 0 7.56 2.50 4.02 5.29 0.00 0.00 4.33 0.00 1.79 1.37 2.21 5.85 0.00 20.25 15.20 7.35 4.58 4.23 0.00 2.81 0.00 0.00 4.35 6 440966 Transcript 0 3.78 28.22 117.35 34.33 8.15 48.32 21.90 16.55 23.18 29.87 4.74 12.60 6.49 19.19 37.95 7.78 3.93 7.42 12.71 26.97 2.66 8.57 3.59 7 431216 Transcript 0 0.00 0.95 0.00 0.00 0.22 1.78 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 436676 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 483315 Transcript 0 8.51 4.60 11.37 5.89 3.17 2.69 2.93 1.95 4.90 7.53 5.48 2.12 3.41 5.58 4.81 7.84 6.13 1.56 3.21 3.77 0.44 1.63 2.97 10 425336 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 431599 Transcript 0 0.16 0.75 4.27 0.30 1.00 0.14 0.40 0.19 2.35 1.03 0.29 0.00 0.00 0.10 0.15 0.00 0.25 0.00 0.00 0.00 1.65 0.00 0.44 12 ER1a ExonRegion 0 2.45 0.79 1.77 1.04 0.64 6.39 2.05 0.60 0.71 2.09 2.80 0.00 0.00 3.57 2.90 2.16 2.38 1.13 1.79 6.92 4.32 5.12 6.24 13 E1_Ab KnownBoundary 0 0.00 0.00 1.83 1.93 0.00 0.00 0.00 0.00 0.00 3.28 5.05 0.00 0.00 12.54 0.00 3.76 4.30 3.61 9.32 6.46 6.05 5.39 14.85 14 E1_Ac KnownBoundary 0 0.00 3.16 3.67 1.76 4.33 5.39 0.00 2.55 0.00 1.58 2.37 0.00 0.00 12.18 13.35 3.59 0.00 2.57 0.00 14.25 0.00 3.12 4.10 15 ER1b ExonRegion 0 0.75 3.59 6.20 1.36 3.46 10.68 1.71 2.24 0.58 5.33 6.25 1.78 0.00 16.34 11.95 7.17 5.24 6.20 8.99 14.52 7.65 7.23 14.68 16 E1_Ad KnownBoundary 1 47.49 39.27 21.85 3.90 29.63 171.44 39.92 8.91 13.72 16.04 68.54 0.00 0.00 75.05 63.66 57.68 20.48 41.66 25.98 26.78 31.38 24.74 34.83 17 ER1c ExonRegion 1 20.07 19.02 18.26 3.39 11.91 85.36 17.30 7.14 9.24 12.43 39.72 4.33 0.00 37.30 33.41 33.17 14.59 26.76 17.67 28.69 20.12 15.12 25.86 18 ER1d ExonRegion 1 21.75 17.60 26.68 10.20 7.43 59.72 14.00 8.65 13.89 16.77 41.25 0.98 0.00 34.93 44.16 20.06 23.97 23.99 15.83 26.18 22.97 17.60 17.94 19 E1_Ae KnownBoundary 1 27.26 37.10 55.70 40.12 15.70 64.45 39.35 26.78 34.03 45.29 75.39 0.00 0.00 71.40 115.83 92.63 44.04 54.76 45.65 73.25 36.88 43.60 52.41 20 ER1e ExonRegion 1 51.01 119.86 59.90 22.17 26.04 84.40 37.87 31.54 39.79 49.60 107.10 15.41 17.46 126.06 148.60 73.48 63.20 44.60 49.05 62.16 44.38 41.55 34.30 21 E1_Af KnownBoundary 1 71.20 312.44 125.01 60.37 60.53 172.29 57.76 55.61 74.02 88.24 139.51 49.22 97.56 389.67 419.93 272.58 98.74 139.49 194.64 114.80 38.73 150.14 103.29 22 ER1f ExonRegion 1 116.25 192.59 139.57 79.75 80.86 141.38 73.92 68.38 89.23 96.68 189.24 60.40 68.86 309.45 330.67 253.21 127.04 142.82 147.93 111.42 62.35 107.68 84.66 23 E1a_E2a KnownJunction 0 233.37 160.56 191.77 110.28 129.20 152.70 97.91 95.70 119.56 126.76 215.53 85.83 86.84 242.10 284.44 212.00 176.06 124.28 123.77 140.23 85.62 86.28 89.63 24 E1a_E2b KnownJunction 0 7.56 2.50 4.02 5.29 0.00 0.00 4.33 0.00 1.79 1.37 2.21 5.85 0.00 20.25 15.20 7.35 4.58 4.23 0.00 2.81 0.00 0.00 4.35 25 E2_Aa NovelBoundary 1 3.33 6.31 8.28 5.39 8.23 8.69 6.23 2.55 0.00 2.58 7.58 34.66 14.61 8.95 31.89 21.28 12.25 2.11 0.00 2.81 0.00 0.00 4.35 26 ER2a ExonRegion 0 158.05 168.04 211.61 125.31 128.23 185.35 105.79 126.21 123.51 148.61 277.00 122.89 89.65 302.55 285.77 184.21 199.01 109.51 128.82 165.83 75.77 128.46 90.19 27 E2_Ab KnownBoundary 0 172.99 155.70 267.64 167.68 133.62 291.03 129.84 143.51 134.81 178.39 282.70 165.65 112.33 337.40 306.82 144.41 193.92 103.38 136.19 182.48 69.19 157.98 100.98 28 ER2b ExonRegion 0 198.93 197.49 262.58 155.19 152.43 284.55 141.37 128.73 127.17 185.40 356.39 198.11 190.23 341.93 370.28 212.58 219.17 105.53 151.30 192.41 67.78 166.21 95.31 29 E2a_E3a KnownJunction 0 248.93 274.89 287.42 175.37 250.51 295.97 202.49 178.80 135.91 205.95 354.14 168.96 205.51 391.14 429.08 250.45 231.04 109.11 172.43 191.11 80.99 143.41 138.97 30 E2a_E4b KnownJunction 0 0.00 3.35 10.35 5.26 0.00 0.00 2.25 0.00 0.00 1.50 2.53 0.00 6.82 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E3_Ab NovelBoundary 0 159.81 332.51 202.77 120.16 213.07 221.07 132.09 134.60 123.44 151.04 280.18 169.11 108.43 320.86 236.23 220.71 241.70 80.13 174.41 138.76 66.23 138.94 135.90 32 ER3a ExonRegion 0 185.59 313.28 246.56 153.86 232.51 266.77 156.23 151.47 137.23 192.98 376.61 207.81 202.66 401.33 375.64 272.81 267.37 107.36 202.35 181.86 85.83 154.40 149.00 33 ER3b ExonRegion 0 179.13 348.16 223.67 130.59 191.18 263.43 128.86 121.20 131.45 181.73 361.81 339.29 202.15 375.30 398.42 248.32 247.23 98.61 148.22 167.35 91.43 168.59 129.81 34 E3a_E4b KnownJunction 0 197.96 367.89 195.85 123.53 155.52 273.48 167.77 95.99 109.43 202.35 363.36 398.98 200.15 378.25 423.51 162.27 242.64 92.90 102.59 174.75 92.36 202.25 102.44 35 ER4a ExonRegion 0 8.51 4.60 11.37 5.89 3.17 2.69 2.93 1.95 4.90 7.53 5.48 2.12 3.41 5.58 4.81 7.84 6.13 1.56 3.21 3.77 0.44 1.63 2.97 36 E4_Ab KnownBoundary 0 3.41 0.00 9.55 4.66 3.82 2.38 0.00 5.87 2.78 1.05 2.58 6.30 0.00 0.00 4.45 12.65 0.00 1.99 0.00 5.69 0.00 0.00 0.00 37 ER4b ExonRegion 0 184.62 278.65 260.10 142.87 111.58 202.42 112.49 122.55 108.97 189.02 391.31 370.72 199.69 399.01 448.19 253.56 265.46 96.71 133.52 181.06 113.34 144.74 100.06 38 E4_Ac KnownBoundary 0 223.00 302.05 264.75 167.08 124.96 144.41 90.84 113.98 143.31 203.64 356.93 314.05 173.69 427.46 558.13 315.47 320.43 86.80 182.69 205.94 110.46 143.47 99.36 39 ER4c ExonRegion 0 173.70 328.65 221.53 134.36 130.58 223.36 131.87 105.80 122.03 161.91 389.11 352.53 236.00 370.71 434.57 266.22 247.30 118.67 139.60 148.43 126.93 140.82 136.06 40 E4a_E5a KnownJunction 0 270.27 472.42 251.00 154.59 186.50 359.11 150.77 88.76 84.55 136.06 383.89 385.18 217.03 368.06 437.85 267.19 243.20 118.18 191.25 161.07 137.89 172.13 147.00 41 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 I4_SR1 SilentIntronRegion 0 10.67 10.93 5.46 6.87 8.20 5.88 6.33 4.65 5.85 4.09 7.43 4.85 2.72 6.90 8.72 15.52 12.50 3.71 6.59 5.39 5.49 4.47 6.54 43 I4_AR1 ActiveIntronRegion 0 14.82 6.10 10.82 20.22 2.68 16.20 8.16 5.47 7.41 3.82 10.63 4.33 17.98 6.50 5.80 17.83 13.20 2.16 15.40 8.16 2.20 5.90 11.75 44 ER5a ExonRegion 0 212.37 373.60 226.69 154.20 167.43 265.21 127.98 102.01 84.14 146.35 293.90 411.22 162.06 334.16 393.90 220.79 200.82 118.88 150.96 128.80 112.86 149.79 110.91 45 E5_Ab KnownBoundary 0 230.49 309.94 140.50 109.21 134.72 175.81 91.64 73.81 59.92 113.81 170.94 202.87 73.70 182.12 217.20 167.39 155.96 77.19 85.27 82.58 64.06 100.48 53.86 46 E5_Da KnownBoundary 0 193.00 255.88 189.38 103.48 228.10 250.20 126.75 97.47 79.57 134.50 243.27 205.12 140.09 368.06 415.60 227.80 157.08 51.07 74.73 124.51 85.99 103.85 78.53 47 ER5b ExonRegion 0 242.87 357.40 247.42 153.78 207.37 276.75 140.23 130.07 104.98 193.44 299.76 349.60 180.96 447.58 502.88 288.54 220.06 103.17 126.88 153.72 117.53 151.75 96.66 48 ER5c ExonRegion 0 253.78 318.60 282.85 153.52 247.97 374.64 179.13 149.08 134.78 215.51 328.99 355.22 251.43 458.20 578.35 355.03 252.42 74.57 115.32 162.90 103.71 210.14 123.20 49 E5_Db KnownBoundary 0 139.80 106.23 53.43 74.82 131.66 125.61 59.40 54.63 53.82 61.92 21.74 33.91 15.10 26.25 33.75 38.37 12.72 10.16 30.21 34.83 5.25 22.23 7.77 50 E5b_E5c KnownJunction 0 200.92 154.51 162.18 78.28 213.33 293.58 150.73 105.68 87.56 138.02 407.63 422.54 171.90 380.90 612.89 224.73 273.49 75.36 112.00 99.52 137.52 225.03 89.46 51 E5b_E5d KnownJunction 0 3.78 28.22 117.35 34.33 8.15 48.32 21.90 16.55 23.18 29.87 4.74 12.60 6.49 19.19 37.95 7.78 3.93 7.42 12.71 26.97 2.66 8.57 3.59 52 E5b_E6a KnownJunction 0 0.00 0.00 5.80 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 53 ER5d ExonRegion 0 91.70 117.50 51.42 68.49 56.13 100.90 37.75 40.06 30.03 54.39 20.22 25.99 16.21 28.25 31.66 27.43 16.62 25.00 29.79 36.16 9.68 19.12 15.83 54 E5_Ac KnownBoundary 0 106.09 73.01 45.59 51.64 51.10 115.39 31.13 30.68 37.90 54.74 31.80 6.15 26.13 29.14 41.91 41.70 25.34 31.46 39.81 28.12 11.37 16.90 12.38 55 ER5e ExonRegion 0 204.90 177.88 176.89 136.26 195.58 271.83 113.30 132.82 111.97 173.00 322.00 349.00 161.29 299.74 489.37 268.02 260.39 103.26 161.68 141.59 108.82 191.33 97.25 56 E5_Dc KnownBoundary 0 88.31 69.79 58.78 65.83 79.54 104.09 28.22 53.15 50.90 51.09 14.42 6.30 13.64 24.07 54.76 81.77 36.75 31.92 30.49 60.91 20.26 21.98 10.16 57 E5c_E5d KnownJunction 1 131.73 99.98 181.99 95.46 159.93 114.48 72.21 94.06 84.40 120.37 315.03 472.50 84.73 287.36 500.28 201.23 188.03 65.75 129.89 144.96 81.67 264.04 92.88 58 E5c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER5f ExonRegion 0 61.67 68.87 48.34 57.02 44.81 86.19 26.66 36.66 39.61 40.16 22.10 11.08 8.67 22.30 32.50 33.73 26.26 20.91 27.17 41.92 10.49 17.02 15.15 60 E5_Ad KnownBoundary 0 74.16 82.55 108.39 111.81 38.79 119.25 34.67 55.78 51.48 57.30 40.48 24.91 21.43 22.13 32.63 19.31 21.04 11.32 48.47 68.77 8.96 33.68 11.44 61 ER5g ExonRegion 0 156.44 209.63 243.15 161.27 154.36 157.56 86.20 139.78 124.55 182.43 351.68 279.69 132.85 216.44 402.81 171.09 236.00 46.06 125.95 138.87 64.30 239.67 73.29 62 E5_Dd KnownBoundary 1 151.58 265.68 136.87 100.75 157.89 172.06 110.72 64.12 54.37 87.09 99.66 290.34 70.29 76.52 200.26 55.80 84.15 7.38 45.18 85.01 5.56 148.67 44.64 63 E5_De KnownBoundary 0 68.98 77.49 45.83 28.13 55.69 35.32 14.09 32.41 35.16 46.82 68.28 78.33 49.35 57.86 136.97 43.92 50.40 1.74 8.28 26.33 9.02 96.57 23.73 64 ER5h ExonRegion 1 74.84 148.45 97.34 64.55 80.91 83.47 47.56 56.14 49.21 72.85 67.03 213.53 80.11 78.61 160.50 58.97 62.85 4.73 24.46 53.87 8.64 115.34 37.24 65 ER5i ExonRegion 1 85.20 97.49 53.03 38.18 71.36 56.65 37.89 45.55 37.08 53.04 63.97 150.90 94.54 55.75 100.77 30.05 35.67 3.11 17.44 27.22 12.52 71.93 16.94 66 E5_Df KnownBoundary 1 296.50 215.69 88.20 40.25 156.28 120.04 84.09 79.72 45.92 65.97 38.96 171.21 107.79 77.34 139.07 53.15 34.97 2.24 8.75 34.26 11.00 90.01 27.40 67 ER5j ExonRegion 1 106.06 78.01 33.02 13.36 58.20 44.42 27.51 27.22 16.37 26.41 16.97 91.40 50.94 38.93 68.02 21.38 14.58 1.18 2.74 14.48 5.39 22.40 11.01 68 E5_Dg NovelBoundary 0 3.26 21.97 8.13 5.43 31.83 11.47 12.45 6.45 3.47 8.22 2.11 6.00 19.15 9.01 4.70 3.42 0.00 4.06 27.01 3.26 3.15 6.12 4.35 69 I5_AR1 ActiveIntronRegion 0 1.59 1.53 0.00 1.50 6.02 1.38 2.98 1.91 0.00 0.00 2.90 21.39 8.69 6.74 2.18 6.64 0.00 0.00 0.00 1.60 1.62 3.13 2.20 70 ER6a ExonRegion 0 0.32 1.51 2.75 0.61 2.01 0.29 0.79 0.39 3.25 2.05 0.58 0.00 0.00 0.20 0.31 0.00 0.50 0.00 0.00 0.01 0.14 0.00 0.88 71 ER7a ExonRegion 0 1.69 1.32 0.00 0.54 1.34 3.23 1.76 0.00 0.96 0.00 0.51 0.00 0.46 0.71 0.54 0.00 0.00 0.00 0.00 0.57 0.59 1.66 0.00 72 ER7b ExonRegion 0 0.00 2.03 0.00 0.00 0.67 5.35 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 ER8a ExonRegion 0 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00