Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ADAMTS1 Gene 0 25.90 20.49 23.40 14.21 20.68 6.05 7.88 20.41 54.81 3.93 0.44 1.28 1.34 1.11 1.36 1.54 1.63 16.11 11.61 79.17 280.91 184.44 75.02 2 284984 Transcript 0 28.66 25.06 29.37 16.34 12.16 6.45 6.46 28.19 87.26 8.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.18 23.03 131.46 514.49 261.51 110.28 3 382884 Transcript 0 0.00 0.00 0.02 0.04 0.00 0.00 0.04 0.05 0.10 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.52 0.00 0.16 4 451462 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.04 0.75 0.00 5 464589 Transcript 0 19.17 12.16 8.10 6.25 26.60 5.48 17.32 8.13 18.00 2.68 2.34 7.26 7.96 6.59 8.09 9.15 9.69 5.26 11.44 22.36 31.82 33.81 15.70 6 492656 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 4.42 3.08 10.22 3.74 1.58 2.31 0.80 9.81 32.65 2.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.51 3.48 52.41 238.55 94.62 43.85 8 E1a_E4a KnownJunction 0 30.08 11.71 33.47 16.95 18.93 4.94 0.00 40.95 107.96 5.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.32 19.95 182.74 638.41 232.99 109.01 9 ER2a ExonRegion 0 0.00 0.00 0.03 0.08 0.00 0.00 0.07 0.10 0.21 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 1.04 0.00 0.33 10 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.09 1.50 0.00 12 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER4a ExonRegion 0 25.00 25.96 53.47 25.65 20.43 10.79 7.92 58.28 163.49 10.69 0.48 0.00 0.00 0.00 0.00 0.00 0.00 57.56 31.69 230.82 900.78 581.57 243.44 14 E4a_E5a KnownJunction 0 19.71 37.16 54.58 39.16 27.84 7.95 11.57 43.37 162.61 4.86 2.47 0.00 0.00 0.00 0.00 0.00 0.00 79.38 48.38 213.16 897.63 617.72 322.76 15 E5_Aa NovelBoundary 0 14.22 0.00 5.50 0.00 8.15 0.00 10.16 7.48 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 25.21 3.12 3.67 16 ER5a ExonRegion 0 21.40 28.47 42.00 32.41 30.77 13.14 9.12 44.17 136.55 5.86 1.72 0.00 0.00 0.00 0.00 0.00 0.00 77.50 44.06 197.52 895.93 569.73 301.82 17 ER5b ExonRegion 0 37.80 32.24 58.49 29.34 20.03 9.47 5.27 48.13 120.14 11.28 0.49 0.00 0.00 0.00 0.00 0.00 0.00 62.81 34.54 218.46 922.11 566.86 256.02 18 E5_Db NovelBoundary 0 3.78 0.00 8.01 4.00 14.09 0.00 4.50 15.85 19.01 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 34.32 40.71 23.15 3.59 19 E5b_E6b KnownJunction 0 50.75 42.82 54.70 46.45 20.12 2.90 1.81 56.97 149.10 15.07 2.68 0.00 0.00 0.00 0.00 0.00 0.00 47.05 31.44 217.57 907.14 684.04 244.91 20 I5 Intron 0 9.61 2.84 5.74 2.84 23.37 1.92 9.25 4.50 12.22 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 4.45 20.81 16.17 32.02 14.36 21 I5_SR1 SilentIntronRegion 0 9.74 2.84 5.81 2.88 23.69 1.95 9.38 4.56 12.39 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 4.51 21.08 16.39 32.47 14.56 22 E6_Aa NovelBoundary 0 6.89 0.00 15.64 3.23 22.24 0.00 6.14 16.88 32.20 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 22.95 14.09 45.93 3.59 23 ER6a ExonRegion 0 26.53 17.89 12.43 6.10 29.45 9.69 29.38 12.41 25.85 3.46 4.69 14.52 15.91 13.19 16.17 18.29 19.39 9.80 21.36 30.85 46.71 41.17 26.19 24 E6_Ab KnownBoundary 0 85.05 9.14 13.54 6.03 23.68 2.90 8.35 15.44 28.79 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.25 8.47 55.80 130.78 63.56 28.68 25 ER6b ExonRegion 0 98.39 41.39 64.81 42.31 36.33 10.51 11.06 70.79 183.07 14.60 0.90 0.00 0.00 0.00 0.00 0.00 0.00 57.98 50.40 277.59 1084.86 694.97 258.42 26 E6_Da KnownBoundary 0 97.50 43.68 61.50 34.33 46.01 8.01 13.69 64.28 185.41 13.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.36 54.87 258.03 1178.16 633.15 239.19 27 ER6c ExonRegion 0 38.34 35.37 51.61 28.72 32.02 16.19 8.45 48.64 138.33 12.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.18 35.09 236.74 903.83 496.59 190.33 28 E6_Db NovelBoundary 0 2.89 0.00 3.81 2.06 12.56 0.00 8.39 13.55 29.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.01 0.00 20.33 42.26 40.41 4.35 29 E6b_E7a KnownJunction 0 49.42 31.31 54.17 42.75 51.36 16.81 8.74 39.02 136.72 17.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.74 28.24 194.56 938.95 628.50 220.83 30 I6 Intron 0 18.61 1.43 7.06 1.90 18.20 2.80 2.79 8.46 25.68 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 2.61 18.46 23.76 50.08 9.64 31 I6_SR1 SilentIntronRegion 0 18.69 1.44 7.10 1.91 18.28 2.81 2.81 8.49 25.80 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 2.63 18.54 23.87 50.31 9.68 32 E7_Aa NovelBoundary 0 25.34 6.64 16.03 3.46 7.05 0.00 0.00 4.03 37.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.80 17.19 48.43 36.50 0.00 33 ER7a ExonRegion 0 30.89 37.13 45.75 32.67 36.95 12.39 7.75 54.03 131.92 10.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.16 31.34 216.50 806.91 517.22 211.16 34 E7_Ab KnownBoundary 0 51.71 31.70 57.95 27.57 32.60 2.61 4.37 60.87 150.98 7.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.52 32.00 272.93 534.25 365.38 194.80 35 ER7b ExonRegion 0 37.57 36.82 51.64 31.84 20.93 13.90 10.04 46.73 142.10 9.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.06 28.52 220.66 721.47 393.01 178.29 36 E7_Da KnownBoundary 0 13.78 17.96 9.28 17.38 12.31 0.00 4.37 12.28 27.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.04 0.00 25.82 107.18 84.93 12.21 37 E7a_E7c KnownJunction 0 51.49 60.38 44.41 28.33 15.96 12.10 18.59 33.80 121.18 16.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.70 45.65 159.22 666.52 456.92 177.98 38 ER7c ExonRegion 0 33.08 9.17 13.51 9.90 24.22 4.43 7.92 11.46 25.43 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.11 2.46 34.18 88.37 94.31 21.85 39 E7_Ac KnownBoundary 0 30.38 10.85 16.41 6.99 15.96 0.00 3.89 10.39 23.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 8.47 38.73 118.30 86.52 28.68 40 ER7d ExonRegion 0 68.23 64.54 53.92 33.93 39.56 15.57 12.78 47.90 130.86 6.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.08 21.82 188.19 779.88 456.84 198.93 41 E7_Db NovelBoundary 0 16.15 0.00 7.18 3.20 16.04 0.00 8.08 2.26 9.52 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.27 20.14 8.76 0.00 42 E7b_E8a KnownJunction 0 90.31 71.04 68.48 26.44 74.70 24.08 18.99 70.24 162.64 6.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.50 48.57 213.10 900.47 635.24 265.91 43 ER8a ExonRegion 0 64.87 58.58 62.39 38.59 47.72 21.63 18.65 53.41 156.20 7.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.10 21.45 201.70 844.13 506.66 224.80 44 E8_Da KnownBoundary 0 19.63 0.00 1.27 0.00 14.43 0.00 8.04 0.00 12.82 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.20 40.77 24.37 0.00 45 E8a_E8b KnownJunction 0 64.01 96.89 83.44 44.42 17.32 21.12 10.20 42.31 163.28 11.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.17 27.20 201.98 856.17 462.56 186.52 46 ER8b ExonRegion 0 11.81 6.42 3.76 6.41 23.75 1.27 5.26 3.86 10.15 1.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 1.52 13.87 16.92 26.45 5.20 47 E8_Ab KnownBoundary 0 23.49 12.17 5.12 3.56 29.71 0.00 5.92 2.34 9.35 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 3.58 28.95 25.33 37.41 7.94 48 ER8c ExonRegion 0 97.65 107.40 95.68 59.61 84.52 19.53 21.30 59.78 178.52 10.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.30 31.45 253.59 727.24 626.53 210.99 49 E8_Db NovelBoundary 0 24.75 0.00 4.29 5.66 22.24 0.00 0.00 4.64 16.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.58 14.64 18.13 11.35 50 E8b_E9a KnownJunction 0 182.48 113.53 115.13 69.52 58.83 17.26 16.34 74.71 198.32 21.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.02 30.02 295.87 615.86 713.13 231.42 51 E9_Aa NovelBoundary 0 36.82 2.70 3.16 3.36 49.92 0.00 1.90 6.78 15.71 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 12.85 22.36 10.90 8.54 52 ER9a ExonRegion 0 108.77 80.64 110.16 59.42 89.08 20.53 26.35 74.08 186.34 12.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.57 37.88 249.94 729.17 661.17 237.39 53 E9_Da KnownBoundary 0 150.40 109.91 95.27 48.38 131.15 13.46 30.43 67.40 176.76 9.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.31 23.15 283.86 687.40 593.78 260.61 54 ER9b ExonRegion 0 71.21 64.87 66.33 44.06 55.84 9.25 14.67 48.61 118.53 4.51 0.00 0.85 0.00 0.00 0.00 0.00 0.00 32.58 25.99 153.07 489.90 410.98 176.38 55 E9_Ab KnownBoundary 0 59.71 52.10 34.30 33.90 44.14 2.84 16.56 29.04 62.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.96 4.80 106.36 241.92 223.13 112.42 56 ER9c ExonRegion 0 45.03 26.93 6.84 6.83 11.14 4.22 4.93 6.10 12.97 0.29 0.00 0.61 0.00 0.00 0.00 0.00 0.00 3.95 2.98 18.91 27.87 54.64 23.51 57 E9_Db KnownBoundary 0 56.60 12.50 4.29 3.43 20.12 0.00 0.00 2.46 4.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.09 7.53 0.00 38.86 14.63 12.21 58 ER9d ExonRegion 0 5.28 2.57 1.80 2.01 2.20 0.36 0.47 2.68 1.96 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 2.42 11.18 0.58 59 IG47_SR4 SilentIntergenicRegion 0 1.71 4.12 0.00 1.23 4.87 0.00 2.14 1.04 4.06 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 3.44 3.57 18.94 1.19