Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UCKL1 Gene 0 64.59 88.48 240.45 141.17 36.69 184.03 49.21 126.95 119.15 143.91 147.28 37.66 55.58 132.61 149.66 89.58 104.71 248.79 126.77 116.81 110.69 81.31 86.54 2 358711 Transcript 0 9.96 6.79 26.25 16.82 4.82 25.25 6.71 10.98 12.62 13.23 17.58 2.62 3.47 15.04 17.36 9.52 18.16 22.00 4.56 5.85 15.46 5.91 8.63 3 369908 Transcript 0 0.00 2.43 9.96 6.19 3.40 23.40 3.44 6.94 14.61 7.52 5.26 0.00 6.33 7.36 4.45 3.50 8.23 12.31 9.41 5.37 5.81 2.39 0.00 4 354216 Transcript 0 16.03 33.12 5.25 8.96 10.32 35.63 5.11 8.64 3.71 7.86 10.22 4.95 3.35 11.37 9.53 3.82 3.30 4.75 4.55 4.86 1.89 0.60 5.03 5 483710 Transcript 0 4.72 3.03 9.52 3.02 1.43 8.54 2.68 3.14 2.60 3.93 3.98 0.97 0.26 2.10 5.44 2.21 3.80 14.98 3.45 7.48 4.62 2.24 2.19 6 418992 Transcript 0 20.58 16.33 44.40 13.45 4.06 46.28 10.74 11.89 14.65 18.55 9.56 3.48 2.40 4.79 16.19 14.01 8.25 107.47 22.78 24.12 17.27 10.95 18.57 7 369892 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 492660 Transcript 0 50.20 30.02 163.26 85.19 8.55 93.15 12.94 107.65 116.39 135.22 45.27 17.09 12.00 49.45 48.42 29.53 30.44 174.49 105.44 49.16 84.64 33.92 39.69 9 430743 Transcript 0 40.41 42.97 101.01 69.61 19.31 96.17 18.78 74.29 66.15 75.64 47.45 10.05 12.79 41.02 69.59 41.87 31.40 132.17 37.04 40.68 52.10 36.62 41.51 10 ER1a ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 3.19 1.06 0.00 0.00 0.00 11 ER1b ExonRegion 1 183.79 75.82 50.32 18.86 27.23 183.40 43.92 27.73 32.98 47.63 87.24 0.47 1.14 53.62 99.58 82.34 73.11 132.04 218.89 96.95 64.56 36.57 133.97 12 E1_Ac KnownBoundary 0 167.07 54.99 130.10 58.80 42.61 133.05 33.34 80.18 89.44 124.16 54.22 0.00 0.00 44.50 62.06 67.76 71.15 321.47 185.13 88.14 46.64 39.19 94.50 13 ER1c ExonRegion 0 29.40 14.46 48.29 14.29 6.67 39.75 11.07 29.23 31.99 44.53 26.44 6.79 1.39 26.99 17.62 13.54 38.96 87.92 34.61 30.60 24.62 16.51 21.79 14 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E4a KnownJunction 1 17.48 16.25 42.19 9.46 4.16 23.51 12.81 34.46 41.46 31.99 69.44 11.55 0.00 45.50 26.95 11.79 37.03 38.80 0.00 38.48 62.58 29.70 0.00 16 I1 Intron 0 10.92 9.90 38.69 14.32 6.61 26.46 8.90 16.27 16.88 21.40 10.80 3.59 2.97 9.58 15.19 12.22 14.03 70.30 21.89 28.90 19.34 9.38 12.96 17 I1_SR1 SilentIntronRegion 0 10.74 9.73 37.23 13.70 6.67 26.16 9.01 16.07 16.59 21.33 10.95 3.36 2.88 9.57 15.50 12.19 13.34 69.30 21.33 28.17 18.78 9.23 12.60 18 I1_AR1 ActiveIntronRegion 0 8.16 20.48 41.14 26.48 6.88 27.51 5.20 17.78 20.56 21.71 16.15 18.55 9.38 8.12 15.34 14.65 15.09 80.11 18.20 39.82 20.78 9.23 18.25 19 I1_AR2 ActiveIntronRegion 0 12.54 11.00 51.20 19.17 6.18 29.09 8.14 18.02 19.29 22.16 9.42 4.98 3.54 9.73 12.65 12.48 19.91 78.76 26.93 34.82 24.16 10.75 15.91 20 E2_Aa NovelBoundary 0 9.71 25.46 55.35 10.35 0.00 18.57 8.17 21.32 22.92 18.94 11.00 12.60 0.00 17.89 4.45 20.42 8.04 102.43 17.69 34.07 28.17 0.00 8.37 21 ER2a ExonRegion 0 20.58 16.33 44.40 13.45 4.06 46.28 10.74 11.89 14.65 18.55 9.56 3.48 2.40 4.79 16.19 14.01 8.25 107.47 22.78 24.12 17.27 10.95 18.57 22 E2_Ab KnownBoundary 0 9.93 36.38 57.48 18.05 3.65 23.85 20.62 17.70 9.52 16.71 12.06 6.30 0.00 14.13 13.35 8.72 0.00 114.54 8.00 25.38 25.27 6.00 16.90 23 ER2b ExonRegion 0 12.54 9.89 22.64 7.34 4.43 21.21 12.03 8.23 3.45 6.73 7.13 1.94 0.00 7.78 5.85 4.04 2.71 40.24 12.36 17.08 17.20 3.33 8.20 24 E2_Da NovelBoundary 0 32.60 26.44 30.25 16.71 20.46 30.10 24.20 22.47 24.65 28.69 11.90 0.00 0.00 2.47 9.52 7.35 3.83 72.71 17.13 31.64 24.96 17.88 23.90 25 E2a_E4a KnownJunction 0 0.00 2.37 1.36 0.00 0.00 0.00 0.00 2.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.59 0.00 0.00 3.15 0.00 0.00 26 I2 Intron 0 21.20 10.40 37.11 15.21 8.24 32.11 13.12 20.49 18.11 23.36 11.75 3.37 6.13 10.31 14.83 11.86 16.20 74.29 21.94 32.36 21.84 9.46 13.71 27 I2_AR1 ActiveIntronRegion 0 18.86 14.90 36.55 15.33 11.43 39.13 11.35 22.62 17.02 19.48 7.28 4.28 3.70 6.07 11.92 12.68 4.16 47.71 17.42 26.30 21.27 7.34 9.78 28 I2_SR1 SilentIntronRegion 0 17.58 11.95 27.73 8.77 8.14 31.55 12.86 17.33 13.13 15.85 10.73 0.09 2.98 6.31 5.55 10.15 9.81 40.44 17.64 21.70 15.49 7.14 13.03 29 I2_AR2 ActiveIntronRegion 0 21.34 8.49 34.36 14.46 8.36 30.48 14.27 18.51 19.68 21.16 13.23 1.91 3.51 10.50 14.62 11.41 16.49 74.49 20.31 33.53 20.99 8.37 14.67 30 I2_SR2 SilentIntronRegion 0 24.64 12.05 47.14 19.46 8.19 35.49 13.34 25.47 19.64 31.58 12.03 5.97 11.26 13.27 19.37 13.49 21.96 97.53 27.83 38.16 26.72 12.98 15.08 31 E3_Aa NovelBoundary 0 46.67 34.86 41.22 15.58 18.93 26.80 14.49 17.54 14.35 25.36 7.69 12.60 6.82 4.94 23.73 3.76 3.74 53.10 16.47 46.02 5.75 11.27 15.88 32 ER3a ExonRegion 0 14.17 9.09 28.55 9.06 4.29 22.56 8.05 9.42 6.44 11.79 9.68 2.90 0.78 6.31 16.33 6.64 11.40 42.48 10.36 22.44 13.85 6.72 6.56 33 E3_Da NovelBoundary 0 17.86 20.92 65.02 21.51 7.05 30.55 6.01 16.72 11.02 21.52 4.74 0.00 0.00 9.71 26.33 27.34 8.23 101.77 13.55 47.62 25.76 19.90 16.22 34 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 35 I3 Intron 0 13.33 15.54 51.42 15.43 8.16 28.62 10.44 14.97 16.16 26.18 12.41 4.01 6.49 10.59 20.54 12.80 13.01 67.22 22.14 26.20 18.00 10.41 13.49 36 I3_AR1 ActiveIntronRegion 0 13.12 14.89 35.16 12.46 4.71 26.19 9.88 13.90 13.49 19.20 11.94 4.19 0.47 11.44 11.63 11.13 12.04 51.27 11.38 19.94 15.74 9.33 8.67 37 I3_SR1 SilentIntronRegion 0 13.47 15.90 59.81 16.98 9.92 29.92 10.75 15.55 17.55 29.80 12.68 3.92 9.57 10.19 25.12 13.68 13.54 75.48 27.65 29.44 19.19 10.99 15.96 38 E4_Aa NovelBoundary 0 27.49 15.26 49.26 20.68 0.00 63.20 23.67 13.51 33.45 30.89 17.11 0.00 0.00 14.30 8.78 11.11 24.59 95.18 22.21 36.18 21.93 11.45 11.61 39 ER4a ExonRegion 0 39.12 40.16 191.80 71.20 20.05 85.54 20.40 84.19 99.22 136.49 124.57 23.43 40.97 127.43 152.98 123.08 104.39 209.94 172.10 128.80 109.46 80.90 105.29 40 E4_Ab KnownBoundary 1 76.01 76.89 328.99 141.64 38.54 174.22 45.75 185.86 186.95 205.60 102.24 63.47 51.62 261.29 366.53 218.32 59.37 437.71 284.90 191.88 123.93 188.35 169.96 41 ER4b ExonRegion 0 33.44 59.42 299.53 102.59 47.92 201.12 50.84 132.90 147.61 191.64 217.01 49.99 47.58 262.34 269.08 154.82 162.94 263.89 225.81 193.00 186.75 185.02 138.66 42 E4a_E5a KnownJunction 1 21.04 33.42 386.56 130.72 58.32 286.26 101.31 177.36 183.94 256.88 186.21 36.61 26.62 95.06 178.75 65.54 237.87 234.25 167.06 126.24 211.03 158.72 70.17 43 ER5a ExonRegion 0 37.88 100.27 326.02 112.48 52.86 303.43 85.70 155.35 183.32 240.12 245.59 55.76 105.72 245.20 176.43 99.55 226.37 328.69 160.67 170.67 201.67 131.18 88.18 44 E5_Da KnownBoundary 0 55.12 24.67 172.64 88.17 15.87 106.36 22.79 117.76 132.78 137.77 36.48 5.70 21.26 41.73 74.66 33.67 45.72 268.08 71.44 26.72 80.37 29.33 46.61 45 E5a_E5b KnownJunction 0 69.12 129.85 348.95 146.14 31.66 62.75 75.74 166.27 141.35 186.15 296.34 73.97 161.52 243.51 230.92 110.83 197.10 333.20 124.33 194.12 114.04 121.67 90.48 46 ER5b ExonRegion 0 50.20 30.02 163.26 85.19 8.55 93.15 12.94 107.65 116.39 135.22 45.27 17.09 12.00 49.45 48.42 29.53 30.44 174.49 105.44 49.16 84.64 33.92 39.69 47 E5_Ab KnownBoundary 0 86.68 42.69 228.76 98.76 19.69 190.69 27.12 157.03 155.99 148.92 34.32 5.85 13.64 41.85 59.46 18.80 47.97 197.03 104.00 54.20 92.36 32.15 51.90 48 ER5c ExonRegion 0 165.51 155.98 559.79 262.74 86.52 388.39 104.74 323.78 283.97 346.57 480.61 138.24 210.14 383.59 290.18 243.00 313.43 668.87 396.50 292.01 322.32 217.90 217.43 49 E5b_E6a KnownJunction 0 125.28 181.81 658.55 348.77 67.57 348.10 118.05 313.60 306.28 337.76 409.68 169.11 301.44 418.15 362.45 215.50 231.42 719.80 418.74 294.21 306.79 290.98 237.31 50 ER6a ExonRegion 0 82.38 141.72 600.76 329.82 43.12 301.10 91.35 319.03 309.02 329.38 390.59 133.21 219.35 320.33 243.04 198.22 242.49 718.56 344.02 243.62 281.23 222.54 211.21 51 ER6b ExonRegion 0 72.79 128.91 627.10 357.25 49.91 327.09 95.27 334.53 332.22 349.53 411.96 74.92 168.94 260.57 195.71 201.33 257.25 656.27 270.41 194.91 280.97 156.45 185.71 52 E6b_E7a KnownJunction 0 90.09 198.12 624.67 369.58 110.61 464.90 128.65 331.34 308.50 365.38 504.23 130.99 188.30 310.79 317.70 212.59 315.66 596.64 286.13 213.93 330.45 182.48 160.48 53 ER7a ExonRegion 0 57.95 123.59 383.45 209.87 45.56 280.62 92.39 193.37 186.51 226.45 226.93 92.10 124.26 193.87 178.79 118.27 167.20 438.53 179.02 154.62 179.57 130.37 127.53 54 E7a_E8a KnownJunction 0 141.88 230.09 538.54 326.10 94.74 390.46 140.92 228.95 205.15 235.28 225.79 81.18 127.59 271.24 260.46 176.62 190.74 562.52 222.88 196.03 219.93 163.00 160.91 55 ER8a ExonRegion 0 64.28 151.47 372.63 217.58 56.06 280.31 88.24 154.36 150.56 182.84 183.00 49.93 92.59 166.00 188.39 120.32 130.65 380.96 120.22 146.19 148.50 109.28 98.76 56 E8_Da NovelBoundary 0 53.19 22.30 29.24 52.41 15.20 41.40 21.46 47.15 42.51 74.94 76.23 18.91 32.79 38.38 68.85 43.41 40.39 105.79 22.21 18.73 67.21 25.84 55.40 57 E8a_E9a KnownJunction 0 43.56 160.76 213.45 116.90 41.43 273.25 69.95 115.87 119.39 133.69 147.56 18.91 65.90 138.68 200.14 66.73 111.92 228.16 108.33 103.67 85.19 60.13 86.99 58 E8a_E10b KnownJunction 0 10.00 3.22 22.44 5.83 7.72 0.00 0.00 0.00 1.62 1.53 9.48 0.00 0.00 7.12 0.00 3.42 8.04 1.74 0.00 2.56 14.58 0.00 0.00 59 E9a_E10b KnownJunction 0 41.04 63.41 143.84 75.15 12.82 151.22 40.41 35.57 34.64 83.86 118.24 12.30 60.87 83.64 80.97 57.85 114.73 123.70 70.03 81.37 27.74 50.58 59.16 60 ER9a ExonRegion 1 36.60 105.51 225.54 113.20 27.07 227.28 60.82 71.88 68.88 129.33 169.98 24.96 85.52 153.34 156.67 72.90 149.51 171.84 99.31 105.88 75.32 74.52 74.28 61 I9 Intron 0 15.25 15.03 15.52 11.63 9.39 42.02 8.32 20.47 14.62 13.58 17.14 8.85 16.52 20.09 38.66 14.28 17.69 34.31 20.01 19.66 24.84 15.01 18.45 62 I9_SR1 SilentIntronRegion 0 37.87 39.70 39.62 31.87 18.87 96.47 20.11 53.05 40.90 36.15 37.75 17.82 34.13 37.39 59.23 29.03 44.74 93.17 46.59 50.75 51.37 37.28 52.58 63 E10_Aa NovelBoundary 0 19.41 49.14 66.47 54.61 27.93 61.16 21.90 85.97 64.15 53.64 38.80 6.30 12.66 65.69 65.02 51.10 38.80 167.64 63.81 48.39 64.37 13.04 56.85 64 ER10a ExonRegion 0 40.41 42.97 101.01 69.61 19.31 96.17 18.78 74.29 66.15 75.64 47.45 10.05 12.79 41.02 69.59 41.87 31.40 132.17 37.04 40.68 52.10 36.62 41.51 65 E10_Ab KnownBoundary 0 64.23 106.95 86.07 84.74 44.74 134.35 20.98 96.28 97.39 85.18 92.39 29.41 12.01 52.68 68.98 69.04 29.92 168.38 30.78 25.57 74.13 30.98 38.33 66 ER10b ExonRegion 0 93.17 138.08 296.53 188.75 65.15 339.96 80.06 116.12 98.96 170.44 178.71 61.50 117.83 208.37 221.35 106.18 130.22 261.61 121.08 144.75 136.07 86.66 117.14 67 E10_Da KnownBoundary 0 6.89 16.51 26.64 25.01 0.00 30.38 4.11 23.82 18.61 20.68 24.80 0.00 13.96 26.90 30.41 4.36 18.05 54.80 4.80 15.28 17.24 11.57 3.24 68 E10a_E10c KnownJunction 0 78.90 136.55 352.74 237.70 69.44 302.67 91.20 152.10 128.07 173.15 197.79 60.92 156.00 220.20 245.26 168.42 106.12 401.43 151.63 148.80 102.80 101.77 169.10 69 ER10c ExonRegion 0 9.92 10.35 30.07 27.81 1.92 50.50 13.42 21.95 23.61 24.92 25.68 5.23 6.93 22.96 34.73 15.61 28.28 42.25 9.13 9.15 16.35 11.82 17.27 70 E10_Ac KnownBoundary 0 30.15 6.58 40.57 27.07 8.06 66.72 21.51 31.34 23.26 30.60 7.21 6.30 19.97 21.37 22.25 38.96 30.11 38.63 12.42 5.82 9.02 8.57 19.80 71 ER10d ExonRegion 0 91.85 171.32 442.54 310.14 80.01 332.84 96.17 207.79 199.66 215.75 227.65 63.69 117.10 273.90 306.82 228.60 183.32 484.79 250.62 186.32 142.86 168.65 187.98 72 E10b_E11a KnownJunction 1 85.27 196.54 557.55 328.00 54.58 348.61 112.75 235.64 225.66 231.39 317.08 30.91 143.33 231.62 287.78 163.38 256.19 432.73 211.21 179.22 196.58 102.02 165.86 73 ER11a ExonRegion 1 76.83 123.95 418.56 241.88 51.24 294.32 103.30 196.96 179.28 218.94 281.48 24.89 115.96 248.90 257.92 134.49 234.94 356.57 152.58 188.88 157.84 88.65 131.64 74 E11_Da NovelBoundary 0 97.20 112.02 345.08 194.35 58.57 274.10 104.93 147.37 127.63 178.47 217.48 41.71 91.88 197.60 206.19 105.27 195.79 241.59 126.78 189.32 133.62 90.07 113.53 75 E11a_E12a KnownJunction 0 0.00 2.43 9.96 6.19 3.40 23.40 3.44 6.94 14.61 7.52 5.26 0.00 6.33 7.36 4.45 3.50 8.23 12.31 9.41 5.37 5.81 2.39 0.00 76 E11b_E12a KnownJunction 1 108.24 213.78 272.28 196.11 46.86 253.32 104.00 142.03 147.28 200.98 236.85 41.41 33.60 163.34 237.84 117.75 134.46 270.98 116.33 147.07 131.65 97.73 87.58 77 ER11b ExonRegion 0 78.04 145.98 299.04 193.17 43.28 257.37 96.42 145.72 135.70 191.03 245.14 40.85 77.08 192.21 226.55 117.08 174.37 269.05 118.00 172.71 140.94 94.85 95.63 78 ER12a ExonRegion 0 153.73 213.71 439.16 298.84 81.60 414.17 90.38 194.04 195.28 212.20 259.50 49.95 84.15 251.58 291.47 189.49 182.22 470.73 210.54 193.50 162.72 153.93 176.60 79 E12_Da NovelBoundary 0 13.85 9.08 22.68 17.65 28.61 64.57 12.85 22.10 15.19 22.16 9.74 0.00 6.17 9.83 21.88 7.60 0.00 28.60 9.41 3.07 5.13 2.69 16.56 80 E12a_E13a KnownJunction 0 143.06 236.27 386.53 299.43 77.50 399.54 63.82 206.23 196.18 176.24 218.32 25.06 60.22 232.15 275.54 145.94 195.51 470.25 181.37 186.96 186.20 105.69 138.63 81 I12_SR2 SilentIntronRegion 0 12.43 22.44 15.12 5.40 6.93 18.80 10.19 5.06 3.37 10.06 5.04 2.78 3.43 5.83 18.44 5.63 7.37 18.21 6.09 10.26 3.82 4.76 2.31 82 ER13a ExonRegion 0 106.65 207.03 350.67 258.80 58.27 278.01 84.59 183.02 174.15 177.08 195.24 30.83 51.03 189.32 313.47 125.74 107.19 336.94 137.62 207.07 127.88 106.72 114.15 83 E13a_E14a KnownJunction 0 127.95 271.99 432.07 272.03 76.40 346.56 120.03 203.56 179.08 200.23 214.16 37.81 41.88 180.53 378.39 145.35 136.04 324.58 164.52 220.39 131.96 147.51 94.75 84 E14_Aa NovelBoundary 0 43.42 26.31 64.04 45.91 15.28 24.36 8.17 39.43 25.90 25.71 22.06 6.00 0.00 11.54 75.41 0.00 12.06 55.42 13.93 27.87 10.13 5.57 14.77 85 ER14a ExonRegion 1 88.91 154.59 456.21 345.01 64.47 278.14 75.42 257.39 202.62 243.38 234.67 46.85 32.26 184.93 318.51 123.69 138.68 295.46 172.33 237.70 147.45 96.68 121.34 86 E14_Da NovelBoundary 0 10.82 19.21 44.14 20.88 7.81 13.29 12.98 30.07 35.18 30.86 12.42 0.00 0.00 24.19 33.62 8.20 4.77 34.78 15.62 8.50 2.41 9.00 15.62 87 E14a_E15a KnownJunction 0 88.46 134.78 527.39 396.52 23.43 215.05 41.07 211.16 167.62 237.84 233.48 53.27 102.10 166.87 263.43 94.68 149.32 176.72 138.92 230.42 159.51 110.04 107.05 88 ER15a ExonRegion 0 65.78 117.91 198.23 153.05 44.87 138.34 36.27 131.76 104.30 129.61 120.49 37.54 32.61 107.76 166.49 56.47 80.63 90.48 84.06 102.17 78.64 84.05 51.62 89 ER15b ExonRegion 0 16.03 33.12 5.25 8.96 10.32 35.63 5.11 8.64 3.71 7.86 10.22 4.95 3.35 11.37 9.53 3.82 3.30 4.75 4.55 4.86 1.89 0.60 5.03 90 IG50_AR1 ActiveIntergenicRegion 0 14.75 5.67 5.09 8.48 3.73 11.75 10.70 7.90 3.08 5.23 0.54 0.00 0.00 1.49 8.80 7.45 3.68 4.10 5.33 1.78 3.67 1.16 4.91