Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NCRNA00176 Gene 0 2.80 14.02 16.82 26.58 9.11 10.14 4.65 20.57 19.36 26.40 4.77 0.60 0.64 1.63 1.65 1.60 1.54 31.14 11.44 18.32 0.88 1.20 2.21 2 444463 Transcript 0 4.25 19.14 19.71 39.03 14.44 10.86 4.84 22.28 19.12 32.52 4.75 0.55 0.60 1.52 1.68 2.24 1.91 29.61 11.21 20.85 0.73 0.85 1.76 3 431158 Transcript 0 0.01 0.04 0.38 0.51 0.01 0.03 0.00 0.57 0.80 1.54 0.01 0.00 0.00 0.00 0.49 0.14 0.00 0.02 0.00 0.83 0.00 0.43 0.00 4 463337 Transcript 0 0.40 0.56 1.44 1.69 0.53 2.50 0.64 6.31 4.43 2.03 0.55 0.00 0.00 0.00 0.33 0.00 0.00 1.76 1.86 2.62 0.00 0.29 0.00 5 358393 Transcript 0 7.54 13.46 8.79 14.82 6.58 13.17 1.17 14.09 10.00 17.62 4.32 3.55 1.30 1.57 0.00 0.00 0.00 39.18 13.52 5.07 0.00 0.02 1.59 6 ER1a ExonRegion 0 4.72 28.34 22.92 51.76 20.82 16.89 9.68 35.80 30.03 46.89 4.76 1.10 1.20 3.04 3.36 4.48 3.81 44.41 22.42 28.98 1.45 1.71 3.53 7 E1_Ab KnownBoundary 0 3.19 29.47 15.70 52.11 39.13 43.50 8.61 22.55 43.84 32.15 2.37 0.00 0.00 2.12 8.90 0.00 0.00 50.70 17.32 17.96 0.00 2.45 11.35 8 ER1b ExonRegion 0 2.04 12.24 14.88 21.25 6.62 11.39 2.42 17.87 22.58 19.85 4.23 0.95 0.44 1.54 0.80 0.79 1.80 37.17 10.49 16.51 1.44 1.33 2.70 9 E1_Da NovelBoundary 0 0.00 3.35 4.44 25.04 10.78 2.33 5.79 18.89 19.10 32.80 5.37 0.00 0.00 5.18 5.93 3.59 4.58 32.58 8.38 23.46 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 1.27 1.93 0.00 0.00 0.00 5.09 1.79 1.67 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E2_Aa NovelBoundary 0 0.00 9.34 10.94 16.08 4.33 7.38 2.25 30.27 26.13 26.03 6.26 0.00 0.00 2.47 4.45 0.00 0.00 52.73 18.64 16.36 0.00 0.00 0.00 12 ER2a ExonRegion 0 2.65 13.91 22.43 28.13 8.12 10.95 4.92 22.59 20.99 27.42 6.90 0.55 0.67 1.73 1.62 1.14 1.35 41.02 12.34 22.31 1.13 1.28 2.55 13 E2_Ab KnownBoundary 0 2.74 18.22 21.58 38.29 24.53 24.13 0.00 21.48 33.74 26.30 6.95 0.00 0.00 0.00 0.00 0.00 0.00 20.69 8.09 12.08 0.00 0.00 0.00 14 E2_Ac KnownBoundary 0 0.00 0.00 1.83 13.05 11.80 2.33 3.97 7.43 13.19 14.72 4.79 0.00 0.00 2.24 4.45 0.00 4.30 9.24 0.00 6.26 0.00 0.00 0.00 15 ER2b ExonRegion 0 0.00 11.18 19.61 44.29 21.41 18.34 2.98 24.41 36.44 36.13 11.11 0.00 3.52 1.62 2.90 0.00 0.00 21.71 6.37 18.62 0.00 0.00 0.00 16 ER2c ExonRegion 0 5.97 9.15 14.33 27.15 10.31 8.49 2.35 16.75 18.98 33.87 5.58 0.49 1.21 0.89 1.31 0.00 0.00 23.31 0.77 12.29 0.00 0.07 0.00 17 E2_Da KnownBoundary 0 6.45 9.87 13.01 16.41 4.16 6.87 0.00 18.89 15.62 27.37 0.00 0.00 6.82 0.00 0.00 0.00 0.00 45.06 3.76 13.68 0.00 0.00 0.00 18 E2a_E2d KnownJunction 0 3.78 9.93 16.50 26.30 8.06 4.83 0.00 8.75 8.22 18.16 4.74 0.00 0.00 0.00 0.00 0.00 0.00 14.80 0.00 12.72 0.00 0.00 0.00 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.27 0.00 5.09 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER2d ExonRegion 0 7.54 13.46 8.79 14.82 6.58 13.17 1.17 14.09 10.00 17.62 4.32 3.55 1.30 1.57 0.00 0.00 0.00 39.18 13.52 5.07 0.00 0.02 1.59 22 E2_Ad KnownBoundary 0 3.63 8.42 6.59 7.69 0.00 2.90 2.25 3.41 9.23 6.88 5.26 0.00 0.00 0.00 0.00 0.00 0.00 4.73 0.00 9.72 0.00 0.00 0.00 23 ER2e ExonRegion 0 1.31 10.54 10.61 12.15 2.73 6.82 1.11 10.23 13.84 16.92 2.67 0.00 0.00 1.08 0.69 0.00 0.00 7.31 2.14 8.50 0.00 2.06 0.00 24 E2b_E3b KnownJunction 0 0.00 12.63 15.49 22.71 3.74 5.39 0.00 11.25 12.96 14.29 5.21 0.00 0.00 0.00 0.00 0.00 0.00 8.58 0.00 12.14 0.00 0.00 0.00 25 ER3a ExonRegion 0 0.02 0.08 0.75 1.01 0.02 0.06 0.00 1.14 1.60 3.09 0.02 0.00 0.00 0.00 0.98 0.29 0.00 0.04 0.00 1.66 0.00 0.86 0.00 26 E3_Ab KnownBoundary 0 0.00 0.00 1.12 1.76 0.00 0.00 0.00 0.00 1.71 4.70 0.00 0.00 0.00 0.00 0.00 3.59 0.00 4.19 0.00 2.43 0.00 0.00 0.00 27 ER3b ExonRegion 0 1.46 3.47 8.98 9.08 1.34 3.37 0.59 7.78 11.92 15.09 5.03 0.00 0.00 1.27 0.71 0.71 0.00 12.50 2.57 8.64 0.30 1.96 1.19 28 E3_Da KnownBoundary 0 0.00 3.29 0.00 1.40 0.00 0.00 2.03 0.00 4.22 3.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 29 ER3c ExonRegion 0 1.34 2.49 5.07 4.54 1.50 2.97 1.32 6.33 6.80 8.99 1.39 0.00 0.25 0.00 0.48 0.00 0.00 5.22 1.42 5.32 0.00 0.00 0.96 30 E3_Db KnownBoundary 0 5.56 0.00 1.60 0.00 7.47 8.69 9.01 13.06 11.02 3.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 11.95 8.37 0.00 0.00 0.00 31 ER3d ExonRegion 0 0.79 1.13 2.88 3.38 1.06 2.72 1.29 7.52 7.39 4.06 1.10 0.00 0.00 0.00 0.66 0.00 0.00 3.51 3.72 5.24 0.00 0.58 0.00