Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARFGAP1 Gene 0 68.99 48.56 114.12 93.15 31.12 83.61 29.98 72.89 75.01 99.31 124.77 41.17 39.36 143.58 201.73 140.43 90.33 108.10 85.88 46.91 186.00 100.15 121.57 2 370283 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 353546 Transcript 0 6.99 35.52 62.69 75.28 24.67 86.09 24.04 27.92 55.51 77.91 0.00 0.00 0.00 0.71 0.00 0.00 1.59 79.96 45.33 40.76 2.00 1.02 0.00 4 370275 Transcript 0 0.00 0.00 1.39 2.03 0.00 0.00 0.91 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 5 395285 Transcript 0 24.04 17.44 43.34 29.51 11.06 25.36 12.17 27.85 28.90 36.57 49.00 13.20 12.80 55.05 58.14 58.28 32.46 43.73 37.48 13.52 77.45 48.96 63.21 6 468975 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 1 47.29 65.63 12.55 10.80 34.85 102.82 34.05 8.83 16.39 27.94 46.42 0.00 1.76 59.84 96.78 65.29 54.70 41.88 60.11 15.06 90.92 73.19 93.24 8 E1a_E2a KnownJunction 0 3.11 9.21 16.00 10.49 14.77 2.56 6.01 6.12 18.34 16.55 12.37 0.00 0.00 12.42 22.99 4.36 24.31 12.64 21.46 2.75 27.24 5.69 19.38 9 E2_Aa NovelBoundary 0 0.00 0.00 4.32 1.53 3.57 0.00 2.25 3.74 3.21 4.97 0.00 0.00 6.82 2.47 4.57 0.00 8.32 9.00 31.53 14.64 6.30 2.82 0.00 10 ER2a ExonRegion 1 12.80 7.40 34.46 12.33 13.84 20.43 8.71 19.74 29.87 38.06 88.67 18.26 24.33 54.43 66.00 27.91 69.42 32.02 33.35 19.08 136.70 21.78 34.69 11 E2a_E3a KnownJunction 1 14.00 19.80 69.66 31.50 6.96 26.18 9.23 31.83 56.54 77.66 221.90 37.66 34.41 107.07 98.65 86.22 187.19 38.76 42.92 49.15 284.92 64.42 30.05 12 E2a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 1.58 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 20.57 7.96 4.35 13 ER3a ExonRegion 0 13.49 26.64 84.52 55.11 10.75 33.98 11.88 53.72 79.44 108.57 158.97 64.75 43.06 173.99 235.34 199.16 109.77 144.68 132.08 61.84 224.98 164.79 168.56 14 E3a_E4a KnownJunction 0 17.48 39.47 104.93 85.60 51.61 98.41 23.58 50.73 97.89 126.73 191.68 98.73 96.42 134.79 163.55 130.99 135.30 174.64 140.62 60.72 290.35 93.01 163.73 15 ER4a ExonRegion 0 39.24 86.79 112.84 85.47 44.35 155.95 52.57 67.85 107.57 143.72 217.31 93.39 74.47 188.81 236.60 166.75 165.56 145.96 145.82 69.63 312.81 155.44 138.23 16 E4_Da NovelBoundary 0 10.22 2.50 8.87 0.00 0.00 0.00 0.00 10.64 4.17 7.20 13.48 17.41 6.49 38.20 41.29 31.96 36.47 19.61 30.97 18.28 39.41 26.33 37.99 17 E4a_E5a KnownJunction 0 30.67 59.79 109.37 102.38 17.06 53.09 26.37 81.90 101.21 125.53 130.77 99.33 60.55 189.54 242.54 128.68 100.70 147.95 99.01 59.44 258.79 126.14 86.13 18 E4a_E6a NovelJunction 0 3.41 0.00 1.83 5.09 0.00 0.00 0.00 2.55 1.10 2.69 0.00 0.00 0.00 0.00 0.00 4.36 3.65 0.00 4.05 0.00 9.33 0.00 4.35 19 I4 Intron 0 6.44 4.13 7.75 3.37 3.21 12.68 4.03 6.41 7.13 7.41 18.18 7.77 3.28 38.05 32.83 30.15 23.44 21.60 16.45 7.85 30.07 33.24 33.58 20 I4_AR1 ActiveIntronRegion 0 3.17 2.08 3.87 0.00 3.03 5.32 4.59 2.90 1.85 2.33 15.51 10.10 6.98 26.08 14.05 26.42 22.12 15.32 8.71 4.44 14.86 26.32 22.19 21 I4_SR1 SilentIntronRegion 0 7.01 3.56 9.58 4.74 4.12 14.69 3.83 8.44 9.84 9.61 19.65 8.20 3.59 45.74 35.87 34.47 26.52 26.69 17.31 9.17 33.47 36.93 36.34 22 I4_SR2 SilentIntronRegion 0 8.39 7.54 6.17 4.81 0.96 14.77 6.26 6.56 10.69 9.66 21.13 7.59 2.21 32.70 39.05 28.55 23.33 24.29 19.97 8.20 43.11 32.19 45.17 23 I4_AR2 ActiveIntronRegion 0 5.42 4.48 7.56 1.11 2.93 12.15 1.72 3.62 0.84 3.72 13.34 4.33 0.00 32.97 36.69 22.66 16.19 10.23 18.12 7.25 22.32 29.48 25.92 24 E5_Aa NovelBoundary 0 3.48 6.58 15.82 6.36 18.85 27.54 2.25 8.26 11.60 10.72 25.74 6.30 0.00 49.62 30.41 48.19 17.39 33.08 34.73 11.12 56.96 43.78 30.13 25 ER5a ExonRegion 0 42.14 61.29 105.48 96.95 21.11 67.16 30.56 109.13 104.23 128.65 176.87 77.46 73.60 217.42 258.30 191.10 147.07 175.72 160.09 71.79 273.54 159.42 196.23 26 E5_Da NovelBoundary 0 11.19 0.00 24.16 4.66 0.00 7.67 1.90 10.47 6.68 8.52 21.74 5.85 0.00 63.45 75.41 28.45 21.51 19.03 4.61 11.95 55.66 53.09 35.08 27 E5a_E6a KnownJunction 0 25.04 58.67 120.60 66.46 28.01 53.32 20.98 88.97 87.99 124.18 116.08 43.36 41.56 139.21 163.42 88.78 101.08 105.46 43.30 77.15 163.65 100.30 90.23 28 I5 Intron 0 6.65 3.96 10.45 3.19 6.73 12.57 6.16 8.42 7.29 10.53 23.82 19.31 15.91 44.50 45.49 47.66 30.73 22.93 22.44 6.69 49.19 38.00 44.69 29 I5_AR1 ActiveIntronRegion 0 7.79 4.58 12.42 2.88 8.74 14.72 7.06 9.38 8.06 11.17 25.15 23.84 18.01 47.82 48.73 51.05 33.44 23.61 29.22 8.14 54.08 41.69 46.79 30 I5_AR2 ActiveIntronRegion 0 5.76 4.16 7.85 2.58 3.82 10.84 5.50 6.49 6.31 9.80 22.59 12.71 14.53 40.74 44.08 43.85 29.02 22.04 12.22 3.74 44.59 31.19 43.84 31 I5_SR1 SilentIntronRegion 0 2.90 1.08 5.26 5.42 1.70 5.56 3.13 6.80 5.25 8.82 19.98 8.12 8.72 35.33 33.66 38.39 21.47 21.44 5.95 4.20 34.31 30.99 37.28 32 E6_Aa NovelBoundary 0 12.59 0.00 2.93 2.00 0.00 7.72 11.66 7.85 8.19 10.74 26.32 23.86 20.62 46.91 41.16 43.66 43.67 11.23 3.67 16.81 51.77 30.68 49.94 33 ER6a ExonRegion 0 32.94 43.57 96.02 82.40 45.00 90.49 35.69 86.92 94.86 131.14 161.67 62.65 86.36 230.46 204.96 160.53 129.57 139.64 98.09 81.98 277.77 115.10 134.41 34 E6a_E7a KnownJunction 0 77.12 53.35 111.76 141.67 36.50 129.41 68.10 114.88 138.57 169.42 186.52 37.81 80.35 261.70 186.66 267.96 152.13 201.09 144.66 91.47 312.10 167.78 227.83 35 I6_AR1 ActiveIntronRegion 0 2.12 4.07 2.45 0.00 5.35 12.84 6.62 1.73 0.82 6.31 17.72 5.05 4.69 29.23 21.76 5.94 19.26 1.23 12.74 10.28 17.26 4.17 14.68 36 I6_SR3 SilentIntronRegion 1 8.64 6.30 6.43 4.58 9.42 10.86 9.89 6.89 8.55 13.24 27.50 15.89 8.86 23.77 30.37 17.17 12.09 5.96 16.16 3.30 20.78 18.20 17.38 37 E7_Aa NovelBoundary 0 48.45 18.55 17.68 10.79 21.48 7.33 23.32 7.27 6.57 14.24 36.54 12.60 0.00 34.38 22.99 22.73 7.85 12.15 13.65 5.62 16.99 21.68 34.49 38 ER7a ExonRegion 0 57.65 61.32 126.98 114.07 58.84 108.12 56.40 107.02 119.16 146.53 183.25 76.50 65.37 241.74 264.16 190.86 151.30 146.77 126.43 73.81 268.08 141.10 169.57 39 E7a_E8a KnownJunction 0 71.86 73.08 92.90 57.60 61.55 142.70 62.27 92.54 108.85 164.02 221.48 133.84 84.57 249.57 221.77 227.29 98.64 165.27 94.87 62.57 350.52 131.47 159.97 40 ER8a ExonRegion 0 40.81 65.29 85.88 62.72 49.52 121.45 38.37 84.57 85.92 133.46 183.86 88.64 76.60 244.30 231.34 162.58 103.08 110.48 87.18 54.39 272.14 110.68 149.92 41 E8_Da NovelBoundary 0 9.56 18.62 25.69 9.02 12.31 5.62 16.47 13.18 10.47 19.77 29.74 12.75 33.60 24.02 29.30 50.41 25.71 28.27 24.47 20.39 26.63 42.80 41.74 42 E8a_E9a KnownJunction 0 40.60 59.73 92.52 72.42 32.60 163.60 48.05 94.92 81.28 112.07 134.09 69.62 30.68 228.74 233.27 169.96 100.61 88.17 80.00 72.29 193.18 106.61 189.85 43 I8 Intron 0 10.97 14.21 17.49 14.03 7.46 13.53 6.86 11.53 10.98 18.92 31.19 11.30 10.03 45.62 37.54 42.01 22.94 36.10 31.64 12.28 42.81 20.70 31.59 44 I8_SR1 SilentIntronRegion 1 11.32 14.76 18.89 13.38 7.21 13.25 6.77 11.11 10.95 19.29 31.52 11.96 10.78 45.24 37.65 42.52 22.62 36.69 33.26 12.85 42.70 21.38 31.64 45 I8_AR1 ActiveIntronRegion 1 17.14 10.78 12.13 14.31 7.22 26.22 5.43 10.37 12.72 12.85 34.60 0.00 9.38 57.17 39.46 65.09 24.10 44.35 10.19 12.77 55.97 20.63 26.72 46 I8_SR2 SilentIntronRegion 1 8.06 10.49 7.55 19.09 9.46 14.99 7.73 14.96 11.24 16.79 28.94 7.23 4.53 48.27 37.06 37.14 25.51 31.62 21.28 8.13 43.32 15.80 31.95 47 E9_Aa NovelBoundary 0 13.93 15.59 29.18 14.45 24.28 13.17 22.88 12.28 14.58 18.56 33.22 18.91 15.10 41.32 54.14 46.65 17.20 35.86 9.41 22.69 60.54 25.84 51.99 48 ER9a ExonRegion 0 28.93 47.14 78.28 53.11 34.62 116.70 28.81 59.19 61.46 94.88 106.95 43.03 32.40 171.57 188.93 140.14 92.23 76.37 70.56 41.78 152.66 85.61 141.40 49 E9_Da NovelBoundary 0 49.27 30.59 57.15 74.68 43.04 58.32 41.60 28.59 66.69 60.47 100.45 49.22 49.19 149.80 129.18 159.19 80.69 82.58 86.68 30.81 144.56 125.90 135.56 50 E9a_E10b KnownJunction 0 3.41 18.88 26.05 27.04 27.93 80.35 8.66 4.89 26.30 26.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.83 17.04 24.74 2.84 0.00 0.00 51 E9a_E10d KnownJunction 0 33.78 24.86 32.55 10.45 23.77 15.39 10.25 23.86 10.13 30.38 83.28 25.81 23.05 132.32 129.67 95.96 89.67 13.76 30.02 0.00 123.37 71.64 99.19 52 I9 Intron 1 18.42 23.55 63.43 54.87 18.90 51.05 17.07 39.56 53.21 69.19 91.76 28.67 18.22 99.22 100.02 98.85 49.89 87.18 64.36 31.98 141.84 73.92 100.07 53 I9_AR1 ActiveIntronRegion 1 18.48 23.62 63.63 55.05 18.96 51.22 17.12 39.68 53.38 69.41 92.05 28.75 18.27 99.54 100.33 99.17 50.04 87.47 64.56 32.08 142.28 74.16 100.39 54 E10_Aa NovelBoundary 0 26.97 25.26 69.22 53.84 19.27 28.90 24.29 56.52 67.74 71.05 117.87 64.07 21.26 99.54 58.97 112.71 61.71 77.68 73.41 59.44 155.18 99.38 94.41 55 ER10a ExonRegion 0 23.32 42.30 67.83 57.29 23.16 62.85 20.09 48.06 55.60 69.75 83.77 33.71 22.76 104.78 111.18 111.40 60.17 104.13 81.70 32.58 139.18 81.82 108.31 56 E10a_E10d KnownJunction 0 0.00 21.97 54.26 66.06 12.22 72.40 31.27 10.56 53.70 60.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.91 39.34 38.03 3.15 0.00 0.00 57 ER10b ExonRegion 0 29.05 49.93 116.75 118.90 33.68 135.32 36.07 60.08 98.38 119.40 97.71 58.07 80.38 79.81 128.36 145.63 86.73 147.37 132.36 63.17 112.85 93.26 104.00 58 ER10c ExonRegion 0 33.50 25.28 70.47 49.96 20.32 33.42 17.64 44.74 41.62 52.00 92.09 24.83 26.77 101.92 100.40 105.74 58.74 66.55 75.34 17.55 136.18 77.41 105.42 59 E10_Ac KnownBoundary 1 30.52 20.92 92.31 49.51 15.53 27.77 13.96 30.19 38.31 52.41 69.65 6.30 0.00 57.74 95.19 61.61 44.23 44.40 52.99 13.55 127.94 69.93 52.93 60 ER10d ExonRegion 0 29.17 21.35 77.34 38.59 16.41 26.53 7.92 41.22 40.43 49.72 89.04 25.33 34.47 77.28 110.34 87.97 63.65 51.52 78.15 19.96 126.42 67.61 71.61 61 E10_Ad KnownBoundary 0 54.23 31.90 79.74 47.55 15.70 45.71 14.18 50.32 49.28 58.56 100.92 37.66 44.32 80.29 63.29 114.07 73.96 59.40 112.85 14.83 115.83 53.03 74.69 62 ER10e ExonRegion 0 63.72 74.04 164.44 110.39 54.09 161.93 66.86 103.00 123.09 149.63 209.37 59.61 71.44 256.00 299.76 225.40 169.52 150.20 156.48 79.52 328.04 131.15 160.99 63 E10_Db KnownBoundary 0 0.00 8.81 28.77 23.47 4.16 10.56 7.91 31.38 22.02 22.62 11.53 5.40 0.00 21.54 35.35 22.64 0.00 31.79 33.22 3.26 5.68 2.82 31.67 64 E10b_E10e KnownJunction 0 106.61 72.03 152.24 112.87 80.22 194.09 96.23 92.25 108.16 108.20 234.22 47.27 86.03 327.98 377.65 235.92 158.77 156.15 181.56 86.67 353.98 161.04 213.66 65 ER10f ExonRegion 0 4.94 6.51 19.71 15.12 3.65 9.08 2.09 10.41 13.75 16.93 9.16 3.35 5.82 13.37 16.51 14.57 6.05 19.58 19.97 3.28 13.11 6.85 10.49 66 E10_Ae KnownBoundary 0 14.08 19.21 42.93 21.31 9.93 11.02 9.01 18.11 14.61 14.56 6.42 0.00 0.00 17.25 4.45 8.72 4.77 23.71 12.14 2.43 14.09 6.25 13.06 67 ER10g ExonRegion 0 72.86 67.94 179.09 142.80 101.36 195.63 71.20 130.28 118.76 145.11 247.77 77.05 84.82 316.84 265.78 301.49 172.15 198.74 194.47 73.28 359.84 162.13 236.92 68 E10_Dc KnownBoundary 0 7.26 6.71 46.15 22.44 14.86 22.71 9.98 44.03 15.89 20.39 36.90 6.30 13.64 61.98 70.59 63.32 40.49 51.07 21.46 7.99 69.62 43.97 60.27 69 E10c_E10f KnownJunction 0 0.00 0.00 1.45 4.06 0.00 0.00 1.81 2.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 70 E10c_E10g KnownJunction 0 54.68 0.00 33.06 13.52 26.32 21.58 7.82 32.00 21.53 15.02 160.94 73.22 52.59 258.46 208.67 242.16 151.00 8.00 0.00 0.00 202.32 100.30 156.21 71 E10c_E10h KnownJunction 0 17.56 65.71 107.77 132.75 33.87 105.51 32.19 68.31 86.52 147.15 0.00 0.00 0.00 2.12 0.00 0.00 4.77 133.15 79.63 59.51 0.00 3.06 0.00 72 ER10h ExonRegion 0 22.04 9.77 42.21 21.57 7.55 15.76 9.62 23.77 16.76 18.75 40.96 9.79 13.51 45.91 52.61 44.03 25.29 29.03 22.61 6.32 77.65 50.75 55.02 73 E10_Af KnownBoundary 0 67.94 2.43 53.84 25.90 20.46 9.88 15.59 10.31 6.86 23.32 36.06 17.11 6.82 40.56 69.84 91.17 26.74 24.58 20.99 2.68 91.31 45.62 84.94 74 ER10i ExonRegion 0 31.53 11.59 33.95 20.04 9.11 10.55 6.40 12.14 10.20 14.85 33.94 9.00 14.76 37.76 55.06 34.92 20.82 10.31 4.71 4.25 63.10 47.16 55.12 75 E10_Dd KnownBoundary 0 21.93 9.14 24.75 19.48 7.56 11.24 12.76 10.64 7.75 9.19 20.95 6.30 0.00 33.85 59.46 54.43 21.51 6.05 0.00 5.62 49.67 32.70 84.17 76 E10d_E10g KnownJunction 0 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77 ER10j ExonRegion 0 27.69 6.24 25.87 13.42 5.42 3.99 5.62 14.26 7.13 12.28 32.98 2.14 7.95 36.19 46.24 35.99 23.95 4.73 7.88 2.60 48.59 34.27 52.90 78 E10_Ag KnownBoundary 0 9.71 2.83 19.84 0.00 0.00 5.79 6.09 4.56 1.65 10.83 19.27 6.30 0.00 9.59 25.59 22.73 7.95 3.98 13.65 0.00 36.08 22.60 20.74 79 E10_Ah KnownBoundary 0 40.97 0.00 34.77 20.41 6.54 16.92 4.95 11.50 16.61 15.47 57.65 12.00 18.67 55.57 85.42 70.15 69.57 6.51 16.85 7.29 55.17 59.03 66.41 80 ER10k ExonRegion 0 67.38 12.20 87.41 39.75 37.91 44.32 17.21 49.55 42.20 56.58 174.93 66.39 65.66 283.68 291.58 242.23 138.09 28.02 39.29 10.99 232.12 145.15 171.30 81 ER10l ExonRegion 0 82.09 51.30 185.94 155.21 61.92 121.69 43.77 124.50 124.20 184.11 182.96 75.70 70.55 262.25 289.88 230.17 181.64 83.65 124.68 57.60 272.60 147.51 177.04 82 E10e_E11a KnownJunction 0 82.98 60.84 231.66 213.49 47.79 170.70 46.37 160.93 130.03 201.68 206.42 98.13 88.14 297.55 440.94 237.80 174.38 119.14 194.74 59.70 335.33 182.97 223.65 83 ER11a ExonRegion 0 91.02 59.20 130.21 111.17 46.02 132.26 48.71 86.94 103.60 143.96 169.42 56.27 46.72 219.66 260.29 189.78 133.19 119.97 127.02 67.97 252.47 126.60 166.37 84 E11_Da KnownBoundary 1 218.26 53.61 119.90 79.61 34.47 116.92 56.26 75.37 92.79 125.15 142.93 25.21 13.15 145.15 241.55 136.29 91.54 133.15 71.81 42.19 149.62 137.65 135.47 85 E11a_E11b KnownJunction 0 32.75 14.54 33.94 19.71 6.28 27.09 17.97 25.84 38.54 49.69 35.06 5.40 0.00 28.14 21.88 37.94 20.57 38.34 17.41 18.79 49.98 42.68 47.12 86 ER11b ExonRegion 0 147.64 86.25 218.36 186.46 49.77 149.31 49.50 135.10 132.17 176.46 200.01 63.63 59.70 224.34 381.49 229.21 141.63 189.65 119.89 87.90 291.40 154.69 181.18 87 E11_Ab KnownBoundary 1 73.05 35.13 64.22 74.65 7.39 35.21 12.41 38.65 44.56 43.41 28.43 19.66 19.80 25.90 123.74 31.27 31.42 53.43 3.58 13.93 39.41 13.59 28.34 88 ER11c ExonRegion 0 101.09 38.67 25.93 35.61 14.45 48.38 20.65 17.22 15.74 19.83 56.44 22.04 25.33 71.08 193.38 61.66 57.98 36.12 31.85 15.82 75.73 28.87 56.60 89 ER11d ExonRegion 0 9.52 5.08 1.84 4.09 0.00 0.92 0.00 1.73 0.00 1.15 5.80 0.00 2.35 3.25 14.51 4.46 0.00 3.70 0.00 0.00 4.41 0.00 1.47 90 ER11e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00