Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TCFL5 Gene 0 32.04 37.38 22.46 18.73 46.52 7.88 19.89 33.45 20.41 17.16 63.31 66.29 46.03 51.34 27.04 21.33 58.86 16.62 26.57 14.38 40.49 51.14 34.41 2 217162 Transcript 0 2.31 3.82 3.23 2.28 6.97 0.07 4.38 3.64 2.45 4.72 13.67 8.18 4.90 6.28 3.01 6.90 18.51 3.62 1.47 1.85 2.49 15.45 10.04 3 335351 Transcript 0 61.37 30.76 25.62 30.59 87.87 14.09 30.27 39.06 26.69 17.74 79.45 69.11 40.76 52.97 40.32 27.52 67.64 5.91 19.86 12.44 56.75 67.17 43.12 4 ER1a ExonRegion 0 0.30 1.28 0.54 0.52 1.27 0.28 0.49 2.01 1.40 1.36 16.19 2.18 1.36 7.97 2.65 5.59 13.12 7.16 6.48 2.77 22.78 2.28 7.00 5 E1a_E2a KnownJunction 0 7.56 22.76 4.02 4.73 12.39 10.68 4.42 9.45 4.46 3.95 25.11 30.16 13.64 24.78 15.20 12.30 40.95 8.79 26.82 5.31 34.47 24.25 24.24 6 I1 Intron 0 4.30 13.02 11.84 6.98 6.27 0.72 3.83 8.45 6.76 3.74 18.27 3.06 2.71 13.86 7.65 8.12 17.53 18.29 6.97 12.30 8.26 5.20 12.61 7 I1_SR1 SilentIntronRegion 0 3.41 12.58 9.30 4.87 2.68 0.73 2.55 5.50 4.33 3.04 10.88 2.83 2.05 12.16 5.64 6.31 14.93 14.17 4.18 9.26 7.81 3.96 8.35 8 I1_AR3 ActiveIntronRegion 1 6.12 15.01 16.99 11.00 12.56 0.76 6.21 13.91 11.24 5.20 31.72 3.73 4.04 17.90 11.57 11.75 23.35 26.58 12.05 18.30 9.79 7.68 20.58 9 E2_Aa NovelBoundary 0 9.71 33.48 33.14 13.98 11.38 0.00 8.74 12.90 15.19 4.57 26.74 6.30 13.31 2.47 8.90 4.36 12.90 11.11 0.00 26.72 5.00 0.00 32.44 10 ER2a ExonRegion 0 23.97 82.86 39.47 33.52 66.94 11.35 32.31 58.26 31.76 32.34 142.49 93.20 79.63 87.17 40.68 44.97 129.43 40.11 59.54 32.32 61.84 67.11 48.09 11 E2_Da NovelBoundary 0 2.96 3.22 14.69 16.05 0.00 0.00 4.20 9.53 6.05 0.00 13.37 0.00 0.00 0.00 5.32 3.59 18.98 19.23 0.00 8.05 0.00 5.51 11.52 12 E2a_E3a KnownJunction 0 29.93 49.73 28.44 47.25 56.37 2.90 24.73 61.69 28.67 40.27 147.98 146.75 100.64 114.31 37.95 34.86 160.73 27.90 68.05 16.23 36.33 100.97 78.11 13 E2a_E5a NovelJunction 0 3.04 12.30 2.72 5.76 0.00 0.00 1.81 9.61 1.39 2.82 12.11 0.00 6.33 9.42 0.00 4.02 4.39 5.93 0.00 0.00 3.15 9.19 0.00 14 E3_Aa NovelBoundary 0 10.59 16.05 14.67 15.82 28.86 5.22 1.72 6.20 7.99 1.24 0.00 13.20 13.31 0.00 5.44 8.72 12.90 13.18 3.48 20.26 0.00 8.70 0.00 15 ER3a ExonRegion 0 25.53 56.70 48.80 37.39 76.35 13.94 34.27 62.12 30.59 40.00 158.78 193.58 123.55 104.16 44.11 45.18 140.72 29.87 65.94 37.25 73.94 79.26 60.14 16 E3_Da NovelBoundary 0 10.52 36.44 21.08 9.89 17.06 0.00 14.13 16.84 15.51 10.45 7.11 13.80 21.75 4.89 0.00 3.33 11.97 15.25 8.00 20.39 9.20 14.08 15.37 17 E3a_E4a KnownJunction 0 41.93 74.79 39.50 23.64 69.78 13.17 53.92 65.92 24.94 32.69 101.66 84.78 76.78 82.94 37.70 53.06 75.64 27.73 63.91 39.63 95.57 55.72 68.03 18 I3 Intron 0 5.13 26.36 10.89 14.14 16.16 1.27 11.25 9.71 9.77 5.00 9.59 8.99 9.41 6.58 5.24 3.77 10.79 11.52 5.27 10.56 6.18 5.93 6.89 19 I3_AR1 ActiveIntronRegion 0 9.34 44.07 8.27 15.68 18.47 2.53 12.80 12.27 8.59 4.33 11.49 10.55 2.21 8.70 4.25 5.59 12.15 15.11 8.11 11.78 10.85 5.83 7.14 20 I3_AR2 ActiveIntronRegion 0 11.01 38.23 12.17 17.63 36.93 0.00 16.24 15.56 13.26 6.65 7.73 12.99 8.13 5.20 12.38 2.97 13.42 15.89 5.95 25.53 6.61 9.58 12.53 21 I3_AR3 ActiveIntronRegion 0 13.23 40.16 13.48 18.06 41.81 0.00 12.58 12.32 12.35 8.03 5.56 16.78 17.59 6.50 11.61 5.94 14.44 12.93 6.37 25.80 6.61 9.90 11.75 22 I3_SR1 SilentIntronRegion 0 3.64 24.64 12.30 15.79 13.15 0.58 8.36 9.23 11.47 4.71 9.32 10.20 11.75 6.78 5.14 3.14 10.11 13.58 6.68 8.75 6.32 7.45 7.88 23 I3_AR4 ActiveIntronRegion 0 4.78 22.07 10.55 12.33 16.94 1.48 12.90 9.18 8.72 5.34 9.37 7.41 9.68 5.87 5.36 3.72 10.82 8.80 3.34 11.01 4.71 4.66 5.87 24 E4_Aa NovelBoundary 0 18.97 10.92 15.17 14.52 30.39 5.34 13.56 14.62 18.43 7.36 11.95 6.00 13.31 0.00 14.59 3.50 17.11 17.04 0.00 23.84 14.76 5.27 14.94 25 ER4a ExonRegion 0 30.59 73.63 37.78 25.55 69.82 12.41 32.25 53.95 33.22 25.91 100.55 82.24 48.05 118.07 47.80 43.62 115.15 47.48 54.96 28.29 88.02 59.41 67.04 26 E4_Da NovelBoundary 0 2.82 21.25 18.24 12.32 3.40 5.79 8.92 11.34 23.81 7.90 35.59 5.55 0.00 0.00 0.00 3.33 31.42 20.52 25.60 9.40 5.56 8.51 15.62 27 E4a_E5a KnownJunction 1 63.57 88.73 33.50 29.70 83.87 2.33 38.02 42.18 24.31 13.51 148.72 34.06 6.82 120.55 39.06 43.92 140.16 37.18 61.27 36.82 98.78 77.34 69.74 28 E4a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 2.67 1.99 0.00 3.41 0.00 10.58 0.00 0.00 4.77 0.00 0.00 0.00 2.24 0.00 0.00 7.72 0.00 4.18 29 I4 Intron 0 4.91 22.97 10.14 13.36 12.21 3.34 12.34 10.48 11.62 5.07 10.44 12.60 7.74 7.60 5.49 5.88 11.30 13.32 11.39 8.17 4.44 4.20 6.70 30 I4_AR2 ActiveIntronRegion 0 6.51 30.76 13.98 18.42 15.33 4.30 17.05 13.91 15.34 6.98 12.56 20.15 12.58 9.87 6.93 8.23 16.01 20.04 16.64 10.72 7.05 6.05 8.09 31 I4_SR2 SilentIntronRegion 1 3.53 26.44 17.77 13.17 8.92 0.00 5.30 25.64 23.06 5.73 19.01 0.00 0.00 11.37 9.67 11.39 6.60 14.78 7.96 6.38 6.61 4.17 16.64 32 I4_AR3 ActiveIntronRegion 0 5.26 21.89 13.39 7.44 6.10 2.53 10.02 14.98 13.52 7.59 12.43 3.63 2.15 4.71 5.46 8.51 7.94 11.02 6.83 8.74 4.59 1.78 8.60 33 E5_Aa NovelBoundary 0 10.08 43.81 23.65 10.75 15.79 0.00 14.79 9.08 18.06 6.69 25.37 0.00 0.00 12.66 16.44 21.45 21.88 13.31 16.66 7.80 8.28 7.47 7.17 34 ER5a ExonRegion 0 54.85 113.49 61.73 46.88 82.12 20.13 40.05 55.70 36.98 21.19 146.72 52.87 52.15 123.52 49.26 48.54 139.40 52.65 45.72 36.72 96.58 90.43 92.57 35 E5_Da NovelBoundary 0 7.26 59.40 38.67 49.61 49.83 0.00 20.31 17.66 28.76 11.31 22.06 0.00 13.47 9.71 10.88 11.79 21.79 24.66 23.25 24.42 2.29 3.00 7.94 36 E5a_E6a KnownJunction 0 3.11 5.85 3.46 2.93 12.65 0.00 5.56 4.85 3.56 6.72 21.22 12.45 8.12 7.59 4.45 8.29 24.31 4.68 0.00 2.75 3.09 26.02 14.26 37 E5a_E7a KnownJunction 0 60.46 20.85 25.04 36.63 104.92 17.43 33.08 31.87 23.84 12.63 99.50 38.11 12.66 54.21 43.39 36.23 84.24 4.44 15.34 12.66 80.62 51.62 48.23 38 I5 Intron 0 5.00 19.71 12.20 9.30 11.29 1.88 7.32 10.05 9.09 4.47 12.72 9.81 10.81 9.69 8.44 4.11 10.54 10.40 5.55 8.00 6.03 4.47 7.15 39 I5_AR1 ActiveIntronRegion 0 9.02 75.55 31.95 29.98 26.69 4.68 19.79 19.12 26.14 7.71 12.90 29.32 23.05 14.49 11.47 7.95 13.30 13.58 14.91 18.32 9.05 4.24 4.80 40 I5_AR2 ActiveIntronRegion 1 5.93 24.69 22.82 15.90 13.26 2.63 8.37 18.32 13.88 8.10 39.57 10.43 7.07 26.36 23.94 8.75 27.03 20.26 9.61 16.35 13.45 13.32 14.14 41 E6_Aa NovelBoundary 0 107.06 39.66 86.48 75.81 96.69 29.98 78.74 102.44 80.79 59.02 133.88 153.95 105.67 101.60 120.28 47.59 113.04 25.33 44.24 73.50 28.60 175.50 28.00 42 ER6a ExonRegion 0 1.50 1.78 3.00 1.63 1.30 0.14 3.20 2.43 1.33 2.73 6.13 3.91 1.69 4.96 1.57 5.52 12.71 2.55 2.95 0.96 1.89 4.88 5.82 43 E6_Da NovelBoundary 0 11.34 33.22 17.30 16.15 69.86 0.00 11.57 27.03 12.04 5.56 29.90 25.66 29.38 0.00 11.00 14.27 13.84 15.59 11.29 5.82 14.95 27.13 23.65 44 I6_AR1 ActiveIntronRegion 0 5.40 18.67 0.00 2.07 51.86 9.35 16.21 1.31 0.94 1.74 11.83 16.76 8.44 14.18 3.13 4.55 10.10 3.75 3.25 1.06 11.24 8.50 7.49 45 I6_AR2 ActiveIntronRegion 0 10.08 11.36 0.50 8.26 5.04 0.00 0.00 7.83 0.58 1.55 8.30 0.00 5.24 9.46 2.73 7.87 12.23 7.61 0.00 0.00 6.09 1.96 4.49 46 I6_SR1 SilentIntronRegion 1 9.93 23.66 16.73 14.55 17.06 1.35 6.40 9.33 7.52 8.55 22.71 15.39 8.91 15.82 11.70 7.28 18.96 10.93 3.86 3.09 13.90 13.95 13.83 47 I6_AR4 ActiveIntronRegion 0 11.07 8.12 2.37 3.73 12.07 2.55 3.35 4.38 4.05 2.10 2.85 6.06 7.21 2.86 1.31 0.46 5.32 1.71 1.63 2.31 0.41 3.13 2.07 48 E7_Aa NovelBoundary 0 10.08 6.18 4.26 6.76 22.92 0.00 6.62 6.82 5.79 4.54 0.00 12.60 15.10 0.00 0.00 0.00 8.23 1.87 0.00 3.00 5.00 3.12 0.00 49 ER7a ExonRegion 0 62.29 40.67 26.21 24.56 70.82 10.74 27.47 46.24 29.53 22.85 59.40 100.11 68.87 51.72 37.26 18.81 51.03 7.39 24.38 12.23 32.88 82.72 38.02