Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 OGFR Gene 0 73.74 37.43 101.07 48.64 35.41 40.14 21.74 81.64 56.82 66.16 160.36 24.25 21.34 144.47 162.63 137.49 102.75 69.66 40.80 39.76 104.35 55.84 53.10 2 357163 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 446814 Transcript 0 0.00 0.00 3.46 6.56 3.74 0.00 0.00 4.19 6.57 7.23 20.01 0.00 0.00 2.47 0.00 0.00 8.60 0.00 0.00 0.00 5.25 0.00 0.00 4 290291 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 370468 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 370461 Transcript 0 29.62 9.27 31.21 24.41 15.18 8.29 8.14 32.44 19.76 21.54 48.17 8.57 7.82 39.57 39.06 42.77 26.33 31.03 18.49 18.23 35.22 23.19 24.20 7 450048 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 370469 Transcript 1 67.57 25.32 189.61 91.36 27.84 51.73 16.74 117.31 102.57 81.88 189.78 14.70 0.00 40.38 42.03 146.37 71.90 101.15 54.12 55.42 118.61 52.42 24.67 9 ER1a ExonRegion 0 56.78 33.38 74.03 23.21 48.33 49.77 31.63 51.02 40.38 52.60 167.10 10.34 15.60 83.32 175.60 151.05 96.01 58.51 52.69 22.35 80.00 33.58 66.43 10 E1a_E2c KnownJunction 0 12.59 18.15 140.89 54.64 3.74 2.78 4.02 94.31 104.63 77.63 343.51 50.27 33.44 212.49 230.67 104.59 189.71 57.29 73.04 35.15 140.61 87.50 47.63 11 E1a_E2d KnownJunction 0 0.00 0.00 3.46 6.56 3.74 0.00 0.00 4.19 6.57 7.23 20.01 0.00 0.00 2.47 0.00 0.00 8.60 0.00 0.00 0.00 5.25 0.00 0.00 12 I1 Intron 0 3.26 2.09 7.50 5.56 2.75 4.71 2.72 7.05 8.82 6.43 26.46 1.22 1.89 23.99 15.54 19.33 14.12 12.57 7.63 9.10 26.77 9.98 8.54 13 I1_AR1 ActiveIntronRegion 0 3.28 2.09 7.55 5.60 2.77 4.74 2.74 7.10 8.88 6.48 26.64 1.23 1.90 24.14 15.62 19.45 14.22 12.65 7.68 9.16 26.94 10.05 8.60 14 E2_Aa NovelBoundary 0 0.00 3.22 14.55 16.78 3.82 5.51 2.25 24.03 15.10 9.13 14.53 0.00 0.00 24.07 21.88 11.45 21.69 22.76 4.80 14.06 20.70 27.07 12.29 15 ER2a ExonRegion 0 24.18 10.21 22.21 19.06 13.13 8.41 8.72 29.92 19.56 20.40 50.68 7.72 7.16 40.22 36.32 41.26 27.09 31.93 18.14 23.41 31.77 21.97 20.99 16 E2_Ab KnownBoundary 0 50.68 3.22 39.62 26.10 23.77 41.91 10.60 26.08 20.80 27.91 93.71 31.51 0.00 45.21 47.47 73.48 51.05 60.56 17.79 43.72 54.80 28.17 44.22 17 ER2b ExonRegion 0 42.77 13.46 30.03 20.12 19.16 10.89 8.89 35.07 19.11 22.45 52.31 14.76 8.30 38.75 43.16 54.57 32.92 41.24 16.54 17.84 37.48 25.29 23.94 18 E2_Ac KnownBoundary 0 37.04 8.81 22.91 6.46 3.31 7.33 4.11 14.79 9.11 9.75 14.16 0.00 0.00 11.71 15.20 8.12 7.85 15.17 23.06 5.43 20.14 6.06 8.62 19 E2_Ad KnownBoundary 0 18.15 23.29 66.26 36.09 32.60 2.56 7.68 49.66 25.93 33.58 111.13 34.81 19.32 59.80 115.21 83.82 124.36 37.18 37.08 17.58 75.62 19.47 32.01 20 ER2c ExonRegion 0 63.07 39.04 162.73 71.42 37.46 21.64 14.56 103.71 87.20 99.78 346.38 64.94 47.84 210.49 255.89 152.77 222.48 73.17 95.56 46.81 185.99 84.17 59.91 21 ER2d ExonRegion 0 73.81 76.69 234.59 102.91 63.67 33.36 32.47 152.65 121.18 135.74 382.44 86.38 73.70 256.61 442.97 411.90 249.51 143.83 119.58 76.19 207.32 147.17 147.95 22 E2_Da KnownBoundary 0 64.83 0.00 33.12 38.72 25.47 5.22 2.08 64.45 14.41 28.53 52.80 18.16 6.17 55.45 40.05 53.75 50.40 41.74 39.15 28.83 22.18 34.11 43.36 23 E2a_E2e KnownJunction 1 51.12 96.56 326.13 130.32 50.76 55.25 41.29 179.95 165.19 169.39 389.47 91.83 83.11 302.20 398.17 649.23 214.87 193.59 166.88 81.24 186.88 227.60 211.96 24 ER2e ExonRegion 0 35.06 8.33 40.22 29.76 17.23 8.17 7.57 34.95 19.95 22.67 45.65 9.43 8.47 38.92 41.81 44.29 25.56 30.13 18.84 13.04 38.67 24.41 27.41 25 E2_Ae KnownBoundary 0 62.75 15.39 39.41 42.35 20.20 20.05 12.67 48.67 29.80 24.90 58.86 17.56 13.15 48.56 38.57 64.51 40.39 32.46 20.42 17.45 29.53 34.54 15.79 26 ER2f ExonRegion 0 70.44 86.69 328.15 152.91 134.82 167.28 75.11 209.39 182.42 197.93 486.52 101.08 111.00 317.54 356.44 354.45 258.74 155.28 146.36 89.06 257.38 160.56 111.59 27 E2_Db NovelBoundary 0 7.41 15.79 27.20 26.14 40.07 23.51 4.06 17.91 10.24 7.09 14.90 24.76 8.28 11.42 27.94 28.62 13.37 25.87 14.21 5.88 5.99 8.70 0.00 28 E2b_E3a KnownJunction 0 56.75 61.11 315.19 147.10 265.11 324.02 182.35 201.51 143.60 188.06 378.25 75.32 54.54 187.48 196.30 164.83 298.64 71.30 87.91 114.54 222.27 93.01 56.17 29 I2 Intron 0 17.15 10.46 21.35 22.75 11.50 10.46 6.99 22.14 14.39 12.76 20.56 9.42 8.18 18.55 23.00 23.45 16.51 16.69 9.87 4.80 20.33 7.34 13.24 30 I2_SR1 SilentIntronRegion 0 5.54 7.53 14.73 13.28 7.00 7.19 3.46 17.96 10.03 5.59 11.37 7.16 4.21 16.06 16.48 26.56 12.23 6.01 9.72 5.10 14.39 5.00 9.60 31 I2_AR1 ActiveIntronRegion 0 22.78 11.90 24.62 27.38 13.70 12.07 8.72 24.23 16.54 16.25 25.05 10.54 10.12 19.82 26.22 22.05 18.63 21.89 9.99 4.67 23.26 8.49 15.04 32 E3_Aa NovelBoundary 0 62.31 17.69 30.93 49.18 20.46 24.59 13.82 54.83 34.32 20.25 29.11 24.61 13.64 28.84 61.19 27.26 18.05 38.34 16.09 8.95 22.80 25.23 38.24 33 ER3a ExonRegion 0 68.18 86.54 308.13 158.92 118.82 133.57 85.60 209.62 166.47 193.29 455.63 86.81 82.64 344.29 328.10 258.80 259.85 93.44 81.49 105.39 223.80 153.89 93.53 34 E3_Da NovelBoundary 0 3.63 0.00 15.05 18.15 11.63 2.56 5.96 7.19 5.73 14.02 14.90 0.00 5.84 4.59 8.90 23.24 3.93 11.77 27.11 2.49 25.88 2.33 0.00 35 E3a_E4a KnownJunction 1 91.42 63.74 397.56 203.54 21.99 28.73 13.82 217.65 202.40 202.97 254.43 105.48 74.18 187.42 184.93 171.49 116.88 86.64 50.07 96.51 154.69 167.72 51.56 36 I3 Intron 0 7.80 4.21 18.66 20.87 8.65 8.07 3.43 23.01 5.24 10.15 14.01 3.00 0.50 11.23 17.04 20.39 17.52 17.76 9.24 8.95 20.96 7.00 10.83 37 I3_SR1 SilentIntronRegion 0 7.99 3.65 17.35 19.89 8.84 7.67 3.50 23.15 5.11 10.58 14.07 2.53 0.55 11.51 16.89 21.08 18.05 17.90 8.76 8.89 20.69 7.25 11.17 38 I3_AR1 ActiveIntronRegion 0 6.85 7.60 26.70 26.98 7.68 10.58 3.07 22.56 6.12 7.80 13.90 5.85 0.21 9.77 18.20 16.69 14.71 17.25 12.24 9.46 22.95 5.67 9.07 39 E4_Aa NovelBoundary 0 6.96 11.71 29.54 48.94 8.23 10.96 11.00 30.60 17.30 5.75 17.43 12.75 0.00 12.71 15.45 26.57 8.79 31.30 0.00 9.59 27.74 4.96 10.84 40 ER4a ExonRegion 0 148.10 74.28 343.17 157.56 51.36 37.59 17.84 192.82 182.11 183.47 412.57 89.48 107.87 306.60 374.83 376.63 198.60 115.02 120.42 107.33 217.07 187.40 131.01 41 E4_Ab KnownBoundary 0 230.49 102.81 378.17 159.69 89.81 68.37 22.39 210.26 176.97 195.13 479.02 97.83 124.83 410.91 520.06 479.19 273.21 155.57 175.06 113.77 266.82 213.03 174.99 42 E4_Da NovelBoundary 0 7.93 20.26 22.35 9.26 9.34 15.62 3.36 24.64 11.17 10.29 66.07 39.76 17.86 75.87 61.31 45.29 59.37 11.40 18.26 9.52 45.72 38.39 16.30 43 E4b_E5a KnownJunction 0 90.24 70.91 268.15 118.03 89.39 87.17 30.52 235.89 161.77 191.63 410.84 99.03 90.25 385.25 300.88 286.25 301.54 141.89 94.31 95.17 209.80 150.76 91.77 44 ER4b ExonRegion 0 115.84 73.60 290.18 115.85 74.92 60.09 18.89 188.07 161.71 174.29 452.22 100.24 109.31 380.29 381.18 373.46 296.95 128.99 122.02 99.92 258.60 171.65 121.42 45 ER4c ExonRegion 1 81.27 67.11 245.32 86.13 66.89 68.22 23.83 171.81 140.31 167.68 402.43 116.03 113.50 360.55 322.04 301.37 295.76 103.84 93.01 88.51 234.47 155.43 92.80 46 E5_Aa NovelBoundary 0 6.59 13.75 21.11 6.69 23.09 0.00 8.21 24.36 7.15 6.47 7.32 6.30 0.00 13.77 10.75 11.62 17.30 9.78 0.00 0.00 5.31 5.45 11.87 47 ER5a ExonRegion 0 106.94 67.83 197.56 86.76 52.02 59.34 31.43 144.62 117.02 134.88 358.61 102.61 70.02 331.27 292.03 218.15 211.73 103.16 85.32 74.26 219.90 91.91 74.05 48 E5_Da KnownBoundary 1 40.45 32.89 64.01 29.07 18.17 8.63 5.26 47.73 43.72 37.31 145.83 41.86 19.48 107.19 83.32 106.98 80.13 33.83 40.85 43.98 95.57 31.84 44.22 49 E5a_E5b KnownJunction 1 67.57 25.32 189.61 91.36 27.84 51.73 16.74 117.31 102.57 81.88 189.78 14.70 0.00 40.38 42.03 146.37 71.90 101.15 54.12 55.42 118.61 52.42 24.67 50 E5_Ab KnownBoundary 1 48.38 56.57 131.96 59.33 28.95 53.78 20.49 48.18 59.29 58.94 122.56 0.00 19.64 72.40 54.02 137.74 64.89 68.73 37.74 32.28 50.41 31.54 43.54 51 ER5b ExonRegion 0 140.40 87.44 210.76 96.76 47.27 72.74 29.13 134.82 112.81 114.31 376.27 76.49 73.48 403.86 290.13 270.46 184.85 131.19 102.99 83.69 196.86 97.23 100.82 52 ER5c ExonRegion 0 117.58 83.30 198.64 92.34 62.00 97.51 34.13 136.75 112.31 123.25 349.35 47.00 65.91 343.31 332.54 293.65 202.01 119.81 81.60 61.98 210.08 120.38 117.27 53 E5b_E6a KnownJunction 0 86.53 78.08 201.74 92.76 75.81 75.01 40.23 138.67 105.53 124.40 210.16 46.07 20.94 191.24 312.88 193.80 179.99 96.50 70.50 34.13 195.90 125.90 83.66 54 ER6a ExonRegion 0 109.73 58.15 153.36 61.83 44.43 68.79 35.17 111.80 83.41 113.97 238.23 36.14 25.66 274.75 273.95 198.84 172.72 115.46 48.91 61.10 166.07 75.81 77.29 55 E6_Da KnownBoundary 0 189.59 72.36 292.09 89.70 41.34 89.49 48.40 215.27 139.26 191.85 252.85 44.71 39.93 232.03 319.92 220.97 178.77 157.19 37.55 85.65 198.92 110.22 70.94 56 E6a_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER6b ExonRegion 0 204.52 94.65 280.64 121.11 78.15 98.44 45.73 214.39 145.72 150.17 354.51 31.79 38.62 277.93 362.47 324.46 213.91 171.03 85.08 79.15 213.71 113.24 110.95 58 E6_Db KnownBoundary 1 296.35 84.59 315.84 117.13 49.49 91.25 41.42 169.84 108.77 153.41 226.43 6.00 6.82 83.58 169.73 224.39 181.30 160.26 77.18 43.21 173.59 88.73 57.62 59 E6b_E6b KnownJunction 1 1204.88 437.62 895.59 442.20 307.81 425.89 167.38 715.88 402.05 464.79 1015.20 61.52 38.96 446.70 741.70 1200.28 855.82 706.57 307.02 201.85 813.30 335.50 355.79 60 ER6c ExonRegion 0 212.07 65.57 146.68 42.27 62.51 53.72 34.86 70.07 68.36 84.72 273.39 33.50 15.76 221.89 271.15 230.90 147.73 95.39 67.57 61.88 176.51 78.70 64.17 61 E6_Ab KnownBoundary 0 393.48 195.75 314.98 127.72 127.33 177.51 74.11 227.43 125.58 144.17 442.80 37.36 39.77 326.27 311.39 455.27 356.90 170.37 104.47 78.87 348.86 128.28 157.24 62 ER6d ExonRegion 0 134.90 69.30 118.39 46.16 49.19 68.23 28.78 97.06 50.85 62.37 199.91 23.68 18.13 226.68 260.48 209.66 162.50 76.44 49.07 44.25 164.01 61.75 71.78 63 E6_Dc KnownBoundary 1 182.62 59.00 147.66 73.55 64.60 69.39 46.06 173.91 99.07 112.18 293.65 65.27 6.17 249.57 371.47 260.53 177.09 115.70 80.38 79.39 200.59 87.69 71.11 64 E6_Ac KnownBoundary 0 99.72 31.70 118.03 68.46 52.12 42.36 27.47 147.37 80.47 93.67 246.59 61.67 25.16 261.82 469.99 207.72 151.57 63.92 62.68 51.71 205.53 102.26 91.85 65 ER6e ExonRegion 1 115.35 44.16 150.85 78.95 46.54 63.99 37.40 201.55 107.81 131.98 285.72 77.78 15.08 274.53 389.60 257.51 176.01 115.55 78.84 66.19 215.96 111.99 86.63 66 ER6f ExonRegion 0 79.53 39.94 113.19 62.75 28.84 36.56 13.63 122.20 77.30 83.91 188.28 18.80 16.27 162.62 211.19 150.14 126.80 66.46 33.17 38.53 129.99 77.45 51.38 67 ER6g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.46 0.00 0.00 3.87 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 2.20 2.08 2.94