Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DBNDD2 Gene 0 12.58 18.65 7.35 9.93 4.94 15.46 5.15 6.32 4.38 4.79 12.05 1.07 0.29 19.71 3.05 16.89 27.29 9.37 4.35 8.60 2.07 3.61 3.09 2 372723 Transcript 0 8.04 7.73 0.00 0.00 1.78 9.05 3.88 0.00 0.00 2.75 1.68 0.00 0.00 4.66 2.71 3.96 8.58 3.08 1.91 3.40 0.00 0.00 0.00 3 372722 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 357275 Transcript 0 1.06 5.71 0.06 0.68 2.91 9.17 0.66 0.08 0.00 0.00 5.58 0.00 0.00 8.19 0.79 1.49 10.59 1.84 1.59 4.79 0.00 0.00 1.47 5 372720 Transcript 0 0.17 0.47 0.84 2.09 0.20 2.17 0.48 1.23 0.70 1.31 1.19 0.00 0.00 1.92 0.63 2.29 3.45 2.92 0.49 1.46 0.26 0.39 0.63 6 372717 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 458369 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 360981 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 372712 Transcript 0 4.33 12.23 8.43 11.06 3.62 4.65 1.41 6.68 5.63 8.06 4.65 1.59 0.17 16.02 0.82 5.95 12.93 5.52 0.99 6.25 1.18 6.93 2.62 10 372710 Transcript 0 13.12 16.43 6.49 12.37 6.61 8.92 5.51 7.86 6.73 4.51 6.24 0.68 0.00 19.65 1.97 13.94 26.60 7.76 2.12 4.68 2.58 3.97 2.49 11 445844 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 426770 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 443296 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 449227 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 ER1a ExonRegion 0 8.04 7.73 0.00 0.00 1.78 9.05 3.88 0.00 0.00 2.75 1.68 0.00 0.00 4.66 2.71 3.96 8.58 3.08 1.91 3.40 0.00 0.00 0.00 16 ER1b ExonRegion 0 9.08 10.04 1.65 5.31 2.75 11.31 4.24 1.16 1.74 3.66 4.60 0.00 0.00 6.42 1.49 6.73 12.44 8.42 3.30 4.90 1.46 0.00 0.00 17 E1_Ac NovelBoundary 0 9.85 5.20 3.49 3.83 7.47 8.63 0.00 0.00 0.00 1.67 9.27 0.00 0.00 15.42 0.00 8.29 21.13 6.92 4.80 9.52 3.15 0.00 0.00 18 E1a_E3f KnownJunction 0 35.56 105.31 2.78 12.39 4.33 49.91 0.00 0.00 3.01 5.61 35.64 0.00 0.00 33.49 4.45 36.06 72.46 8.54 14.40 15.53 0.00 0.00 0.00 19 ER1c ExonRegion 0 17.50 56.63 1.51 10.69 5.35 43.73 0.46 0.00 1.95 3.31 25.95 0.00 0.00 25.99 3.01 23.55 57.89 10.16 12.01 18.58 2.20 0.00 1.81 20 E1_Ad KnownBoundary 0 3.19 6.71 5.32 4.13 3.48 20.22 2.03 0.00 1.79 1.42 7.74 0.00 0.00 16.01 0.00 4.36 13.74 2.45 8.47 3.26 2.47 0.00 4.35 21 ER1d ExonRegion 0 2.12 8.13 0.11 1.36 2.68 18.34 1.32 0.16 0.00 0.00 5.80 0.00 0.00 16.39 1.58 2.97 16.50 1.85 3.19 6.58 0.00 0.00 2.94 22 ER1e ExonRegion 0 2.12 6.28 2.78 6.21 2.68 13.16 1.32 2.95 0.00 0.00 7.62 0.00 0.00 17.15 2.56 6.21 15.73 4.67 3.19 8.89 1.43 1.78 2.07 23 E1_Db KnownBoundary 0 3.33 0.00 7.27 13.95 0.00 2.90 1.85 4.81 3.44 4.92 0.00 0.00 0.00 7.18 0.00 8.29 3.83 4.60 7.34 6.52 3.15 3.12 3.67 24 E1b_E3f KnownJunction 0 0.00 3.29 0.00 0.00 3.14 0.00 0.00 0.00 0.00 0.00 5.37 0.00 0.00 0.00 0.00 0.00 4.68 1.82 0.00 3.00 0.00 0.00 0.00 25 ER1f ExonRegion 0 0.33 0.94 1.67 4.17 0.41 4.34 0.95 2.46 1.41 2.62 2.39 0.00 0.00 3.83 1.25 4.59 6.90 5.85 0.98 2.93 0.53 0.78 1.25 26 E1_Af NovelBoundary 0 0.00 3.22 0.00 1.90 4.16 10.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 12.48 4.49 2.40 0.00 0.00 0.00 0.00 0.00 27 E1_Dc NovelBoundary 0 18.67 26.77 0.00 0.00 0.00 5.74 2.25 0.00 0.00 1.67 8.05 0.00 0.00 2.94 0.00 17.17 9.44 2.53 0.00 3.20 0.00 3.12 0.00 28 E1c_E3e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E1_Ag NovelBoundary 0 9.63 66.90 4.88 5.39 14.94 31.97 9.85 0.00 3.12 2.98 18.27 0.00 0.00 46.80 4.45 39.14 21.04 21.60 22.97 9.46 0.00 5.33 11.52 30 ER1g ExonRegion 0 2.12 4.07 0.00 0.00 2.38 0.82 2.80 0.00 0.00 0.00 4.30 0.00 0.00 15.34 0.00 0.00 6.24 2.26 1.06 0.47 0.00 0.23 2.94 31 ER1h ExonRegion 0 3.42 18.15 0.00 0.84 6.38 10.30 4.99 0.00 0.00 0.53 9.37 0.00 0.00 40.60 0.00 7.09 10.92 5.83 13.23 2.13 0.00 2.08 1.81 32 ER1i ExonRegion 0 10.11 34.12 0.00 1.36 11.30 19.97 8.97 0.00 0.00 1.15 15.03 0.00 0.00 60.81 2.90 33.35 19.44 7.60 17.70 7.09 0.73 5.79 6.53 33 ER1j ExonRegion 0 50.50 70.65 13.26 15.26 19.32 83.71 29.91 8.28 5.75 6.73 51.03 0.77 1.08 62.23 14.10 63.73 97.74 20.90 22.02 23.76 5.01 10.34 10.24 34 E1d_E3f KnownJunction 0 191.22 176.74 64.01 66.82 73.77 253.77 104.05 26.94 24.33 14.80 166.88 6.15 6.66 256.81 30.16 226.52 413.74 76.61 27.77 45.57 13.78 31.29 18.69 35 E2_Aa NovelBoundary 0 3.78 8.55 4.91 11.59 7.81 2.78 9.63 10.88 1.71 6.93 4.26 0.00 0.00 4.89 0.00 12.82 8.88 2.57 0.00 9.01 2.41 2.76 3.59 36 ER2a ExonRegion 0 8.67 15.72 8.31 13.33 4.02 9.30 2.83 10.90 6.67 6.98 9.30 3.17 0.34 19.69 1.64 11.90 17.44 8.47 1.98 12.50 2.35 5.11 5.23 37 E2_Da NovelBoundary 0 3.11 18.88 3.02 14.12 7.72 2.90 8.61 4.52 3.30 3.01 2.47 0.00 0.00 11.77 0.00 30.85 26.09 9.20 0.00 5.37 5.62 0.00 4.01 38 E2a_E3f KnownJunction 0 0.00 8.75 8.54 8.79 3.23 0.00 0.00 2.46 4.60 9.13 0.00 0.00 0.00 12.36 0.00 0.00 8.42 2.57 0.00 0.00 0.00 8.76 0.00 39 Ix Intron 0 7.38 7.09 1.59 5.31 5.83 15.99 2.31 2.25 4.81 1.49 5.90 1.55 0.00 11.37 0.89 9.07 14.39 5.61 2.78 3.71 0.96 1.82 2.56 40 Ix_AR1 ActiveIntronRegion 0 7.51 7.21 1.62 5.40 5.93 16.25 2.35 2.28 4.90 1.52 6.00 1.58 0.00 11.57 0.91 9.20 14.64 5.70 2.83 3.77 0.98 1.85 2.60 41 E3_Aa NovelBoundary 0 23.49 37.56 21.11 18.68 17.40 2.84 11.00 4.81 5.79 6.74 4.90 0.00 0.00 9.71 0.00 19.23 30.01 14.38 4.42 11.95 2.84 7.96 0.00 42 ER3a ExonRegion 0 13.12 16.43 6.49 12.37 6.61 8.92 5.51 7.86 6.73 4.51 6.24 0.68 0.00 19.65 1.97 13.94 26.60 7.76 2.12 4.68 2.58 3.97 2.49 43 E3_Ab KnownBoundary 0 0.00 6.71 0.00 5.13 6.71 16.24 0.00 0.00 7.73 2.87 0.00 0.00 0.00 11.48 0.00 3.59 18.14 8.83 4.80 5.94 2.47 0.00 4.35 44 E3_Ac KnownBoundary 0 0.00 0.00 1.83 0.00 4.33 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E3_Ad KnownBoundary 0 3.41 5.85 3.46 3.86 0.00 2.27 1.77 2.22 1.50 0.00 4.63 0.00 0.00 5.00 0.00 6.75 0.00 2.49 0.00 2.94 0.00 7.84 0.00 46 ER3b ExonRegion 0 11.79 11.77 4.03 7.79 7.45 10.09 1.42 3.46 7.50 4.51 3.18 0.00 0.00 16.13 6.84 5.94 14.15 8.18 3.19 7.90 2.20 4.46 2.94 47 ER3c ExonRegion 0 12.70 14.24 5.51 8.18 8.03 1.83 3.97 5.19 7.41 4.01 3.87 0.00 0.00 16.24 8.70 5.94 9.90 10.16 3.19 6.38 2.20 6.25 2.94 48 ER3d ExonRegion 0 16.88 15.16 8.52 12.59 6.56 5.24 5.96 6.54 4.94 4.56 7.55 0.00 0.00 19.61 4.14 10.05 6.52 8.23 0.68 5.67 3.52 5.90 0.77 49 E3_Ae KnownBoundary 0 18.08 23.61 15.32 17.81 0.00 7.50 4.50 7.15 3.39 4.30 9.74 0.00 0.00 22.37 0.00 11.19 16.74 7.13 0.00 5.94 2.59 0.00 0.00 50 ER3e ExonRegion 0 8.68 19.25 11.55 11.16 6.38 11.25 6.15 8.17 5.52 4.11 4.98 0.03 0.04 13.71 1.39 15.40 18.71 5.91 0.35 7.32 2.92 2.89 4.58 51 E3_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER3f ExonRegion 0 35.01 43.37 33.63 34.59 14.50 43.76 15.67 18.71 17.69 19.13 94.99 0.89 1.77 67.66 11.78 69.15 179.40 39.52 16.95 29.95 8.17 15.13 9.59 53 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER4a ExonRegion 0 10.84 34.06 23.15 31.05 17.57 54.08 14.67 12.75 7.68 8.78 16.19 1.32 0.07 67.53 8.09 74.24 55.95 34.97 14.82 22.08 2.57 11.08 6.89 55 E4_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER4b ExonRegion 0 5.33 7.51 7.37 5.96 3.80 10.50 1.37 7.83 1.04 7.18 4.21 1.19 0.00 24.62 4.07 13.85 24.22 6.94 12.90 11.77 3.23 0.00 0.38 58 E4_Db KnownBoundary 0 12.82 9.27 16.68 9.32 0.00 14.14 1.72 7.35 0.00 5.83 4.42 6.30 0.00 43.20 8.90 16.41 23.47 12.31 3.58 11.51 7.54 0.00 0.00 59 ER4c ExonRegion 0 3.35 3.50 9.97 4.73 0.00 5.40 0.00 3.74 0.72 3.89 7.14 8.06 0.00 31.17 4.92 17.17 28.79 4.57 5.04 7.68 5.45 0.00 0.00 60 E4_Dc NovelBoundary 0 3.26 2.63 0.00 7.19 0.00 4.77 5.87 4.97 1.77 1.67 4.58 0.00 0.00 0.00 0.00 12.05 25.43 0.00 0.00 2.56 3.15 0.00 0.00 61 E4c_E5a KnownJunction 0 0.00 0.00 5.20 3.93 0.00 0.00 0.00 0.00 1.33 1.10 7.00 0.00 0.00 17.31 0.00 20.42 26.93 1.78 8.85 3.07 3.03 0.00 0.00 62 ER5a ExonRegion 0 14.15 16.79 0.90 0.44 0.68 6.08 1.80 0.95 0.52 0.70 0.43 0.27 0.30 2.20 1.19 1.52 2.19 0.93 1.01 0.61 0.25 0.00 0.00 63 ER5b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00