Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C20orf199 Gene 0 186.66 700.47 499.45 1313.44 326.19 722.38 215.80 228.00 104.31 180.05 670.48 139.82 141.89 317.94 493.20 489.60 318.75 250.97 1242.95 202.39 376.38 363.93 340.52 2 450535 Transcript 0 4.28 16.87 10.39 15.61 14.86 32.25 13.71 3.05 6.00 3.63 32.81 27.60 16.68 11.82 16.87 28.87 14.23 6.98 15.31 8.24 11.38 12.60 9.12 3 441722 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 371743 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 417721 Transcript 1 0.00 3.22 299.37 768.53 0.00 0.00 3.80 121.13 66.67 126.30 541.66 18.91 19.80 51.86 128.81 29.14 353.62 82.28 543.64 144.20 380.61 75.50 45.58 6 458653 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 448459 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 428008 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 326677 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.99 0.72 0.00 0.00 0.93 0.00 0.00 0.00 0.00 1.05 0.00 0.04 0.00 1.73 0.00 0.00 0.00 3.16 11 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 4.60 2.53 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 0.00 0.00 3.03 0.00 3.16 12 ER1b ExonRegion 0 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.03 4.00 1.69 2.85 1.34 0.00 0.00 0.00 1.94 2.63 13 E1_Ac KnownBoundary 0 3.78 0.00 1.30 0.00 0.00 0.00 0.00 0.00 3.27 1.40 2.68 0.00 0.00 0.00 0.00 7.95 0.00 2.45 0.00 0.00 2.78 0.00 0.00 14 ER1c ExonRegion 0 0.59 0.03 0.02 0.06 0.00 3.40 0.00 0.00 1.22 0.52 0.74 0.00 1.59 4.11 0.00 0.87 1.31 6.90 3.61 0.03 0.91 2.27 2.33 15 E1_Da KnownBoundary 0 0.00 0.00 2.60 0.00 0.00 18.06 0.00 3.61 3.44 0.00 0.00 0.00 0.00 2.24 0.00 7.26 0.00 18.65 8.85 3.07 2.53 0.00 0.00 16 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 6.66 4.71 0.00 0.00 4.77 2.16 9.60 0.00 0.00 3.12 0.00 17 ER1d ExonRegion 0 0.75 3.74 3.10 1.50 1.93 6.15 5.11 2.84 2.29 1.32 1.53 0.00 0.33 2.59 1.29 1.52 1.21 4.77 5.95 3.43 1.31 1.43 4.15 18 E1_Ad KnownBoundary 0 3.56 72.42 20.96 14.18 36.59 30.04 77.73 13.35 12.33 8.35 15.48 0.00 6.82 4.94 0.00 16.58 18.51 36.81 82.54 49.79 9.14 2.76 11.69 19 ER1e ExonRegion 1 1183.93 4324.16 1109.18 3473.20 1593.55 4311.63 1366.27 485.65 227.13 383.07 2029.39 100.16 267.71 1277.13 1804.93 1933.93 1028.63 1068.15 5598.28 810.23 1462.79 1399.39 1640.87 20 E1_Db NovelBoundary 0 13.19 82.95 137.01 416.86 42.87 9.14 43.15 48.59 31.08 45.21 4.63 0.00 14.77 0.00 4.45 42.30 32.45 188.16 81.32 7.48 23.97 25.41 48.32 21 E1b_E2a KnownJunction 1 241.38 938.19 1927.73 5952.92 416.98 791.36 294.83 785.79 367.18 615.51 306.97 53.57 41.07 114.19 440.20 319.83 398.78 1237.88 1188.93 188.88 300.79 179.35 239.02 22 E1c_E2a KnownJunction 1 39.64 41.44 55.56 134.25 24.70 31.12 14.97 19.59 8.10 13.38 38.69 12.30 31.33 11.89 56.00 12.39 4.30 26.45 87.16 9.27 47.01 3.12 36.54 23 ER1f ExonRegion 0 35.21 89.20 103.21 315.38 35.64 38.09 31.71 39.75 21.61 34.56 41.65 7.87 12.58 8.56 38.11 48.90 26.71 134.72 119.16 9.57 47.38 21.97 52.73 24 ER2a ExonRegion 1 129.43 516.41 905.76 2185.33 186.74 351.22 105.68 428.20 201.88 338.59 1237.06 144.07 116.85 234.24 461.41 299.08 711.11 412.49 1105.56 270.07 930.07 212.94 233.25 25 E2a_E3a KnownJunction 1 23.93 368.29 1440.49 3155.58 158.40 236.51 70.75 598.70 266.69 475.24 2958.06 201.82 203.88 600.63 842.95 519.09 2026.46 496.49 2112.72 635.53 1974.90 410.20 383.11 26 E2a_E6a KnownJunction 1 0.00 3.22 299.37 768.53 0.00 0.00 3.80 121.13 66.67 126.30 541.66 18.91 19.80 51.86 128.81 29.14 353.62 82.28 543.64 144.20 380.61 75.50 45.58 27 I2 Intron 0 18.08 21.87 38.71 15.81 18.12 10.44 31.75 19.23 15.14 7.46 54.91 62.32 30.14 41.85 45.92 64.31 65.79 40.19 28.02 21.14 28.86 23.33 23.04 28 I2_SR1 SilentIntronRegion 0 19.92 24.23 42.82 17.88 17.87 11.83 34.66 21.50 17.32 8.30 60.14 70.64 34.04 44.41 46.85 62.93 71.64 40.32 29.25 22.28 30.10 26.72 20.73 29 E3_Aa NovelBoundary 0 14.52 5.85 28.09 17.28 23.17 9.09 25.08 13.02 8.25 8.30 50.85 69.62 26.62 38.32 45.86 56.40 45.91 39.13 18.07 18.98 25.02 9.06 23.22 30 ER3a ExonRegion 0 15.04 252.52 1478.30 4247.64 251.71 225.83 83.64 676.49 285.11 471.59 1829.08 454.29 433.12 1392.70 1863.41 2555.44 964.28 883.37 5142.44 652.62 981.85 1394.04 1621.54 31 E3a_E4a KnownJunction 1 2.74 194.24 756.63 2726.29 249.66 137.70 36.35 444.96 180.38 337.20 743.61 242.03 504.84 267.82 546.64 1328.88 269.10 457.06 1681.46 326.17 324.27 276.90 854.74 32 E3a_E6a KnownJunction 1 3.78 42.76 418.97 1040.83 149.83 30.95 27.47 187.91 56.02 80.91 443.01 243.53 466.85 257.29 416.10 1086.13 143.71 199.68 1611.15 63.15 166.00 226.75 866.09 33 I3 Intron 0 11.64 15.16 8.60 8.76 17.85 17.99 31.68 10.10 7.94 5.36 55.36 34.57 7.90 46.74 34.95 57.13 50.50 18.05 16.25 25.04 40.60 21.25 39.17 34 I3_AR1 ActiveIntronRegion 1 12.40 16.53 9.56 9.59 19.22 18.83 34.81 11.21 8.76 5.74 60.86 37.27 8.93 51.94 38.47 63.19 54.65 20.05 18.36 27.33 45.01 23.41 43.39 35 E4_Aa NovelBoundary 0 7.19 19.21 26.34 34.26 30.65 41.45 40.06 18.32 16.12 14.64 79.39 60.62 27.76 80.94 52.91 70.58 43.57 75.90 8.38 18.28 26.13 23.70 56.08 36 ER4a ExonRegion 0 7.07 243.01 784.57 2379.77 807.39 1571.18 305.43 400.97 156.08 320.17 789.53 229.11 279.66 313.74 623.39 613.12 300.75 334.47 1326.60 267.16 359.31 278.55 356.71 37 E4_Da NovelBoundary 0 20.97 26.38 23.62 15.48 46.35 54.68 58.07 20.62 34.20 22.59 119.29 99.63 46.10 95.59 70.59 109.54 108.93 74.08 42.92 40.01 97.92 55.91 39.01 38 E4a_E5a KnownJunction 0 0.00 5.92 12.03 17.61 7.81 45.66 6.49 6.00 5.21 4.92 25.43 6.00 0.00 4.89 5.32 11.19 4.58 3.94 0.00 3.26 2.59 5.45 0.00 39 E4a_E6a KnownJunction 0 0.00 540.36 964.96 2389.11 2273.01 4652.72 1034.56 404.50 175.32 332.74 633.53 157.10 270.76 293.13 677.55 364.09 265.54 186.54 1396.09 216.93 324.08 304.15 230.57 40 I4 Intron 1 14.49 23.67 9.38 11.82 18.32 26.36 28.55 7.05 15.75 9.94 74.10 63.11 20.40 95.49 43.87 80.37 87.00 46.86 17.44 38.60 49.03 32.09 47.24 41 I4_SR1 SilentIntronRegion 1 14.99 24.49 9.70 12.22 18.93 27.28 29.50 7.30 16.29 10.29 76.64 65.27 21.11 98.79 45.37 83.14 90.00 48.49 18.05 39.92 50.72 33.21 48.88 42 E5_Aa NovelBoundary 1 17.11 64.26 32.76 39.36 75.55 134.87 75.96 36.27 39.76 37.93 150.83 310.45 130.84 79.29 53.77 90.57 100.79 27.03 31.72 74.40 45.90 84.20 12.29 43 ER5a ExonRegion 0 12.83 31.32 11.34 15.46 24.04 48.88 34.64 3.15 7.28 4.30 60.21 70.95 50.05 30.57 39.97 67.38 28.57 12.77 32.76 21.47 25.92 32.34 24.02 44 E5_Da NovelBoundary 0 27.34 61.44 53.96 51.48 20.71 46.00 30.38 27.07 34.46 56.14 172.46 210.37 141.87 91.18 98.77 154.49 133.15 83.78 54.87 97.54 57.89 70.23 71.79 45 E5a_E6a KnownJunction 0 0.00 13.35 7.81 13.75 12.73 2.21 0.00 0.00 5.50 1.67 12.79 5.85 0.00 0.00 5.32 8.03 9.54 4.23 13.18 0.00 5.62 0.00 3.33 46 I5 Intron 1 116.58 117.73 100.84 112.38 116.28 92.00 65.04 62.76 42.05 51.38 163.73 156.15 60.85 109.36 151.85 114.69 75.07 74.35 40.69 68.04 49.53 98.58 58.61 47 I5_SR3 SilentIntronRegion 0 43.71 66.00 18.47 20.56 28.19 31.69 30.13 21.71 11.64 21.60 78.24 43.15 13.02 105.30 47.12 77.67 66.78 55.39 18.80 46.63 64.09 37.76 37.13 48 I5_AR3 ActiveIntronRegion 1 123.50 122.67 108.63 121.07 124.62 97.73 68.36 66.65 44.93 54.21 171.87 166.86 65.38 109.82 161.78 118.25 75.90 76.18 42.77 70.10 48.21 104.36 60.67 49 E6_Aa NovelBoundary 0 68.46 57.29 134.29 155.23 48.64 41.17 56.88 92.62 67.10 65.30 155.46 114.64 105.67 107.42 180.85 112.79 83.68 39.17 50.35 59.76 78.77 72.19 43.62 50 ER6a ExonRegion 0 470.43 1659.06 901.10 2041.97 686.93 1479.01 443.08 397.87 191.50 338.02 1148.58 341.58 306.62 410.99 734.19 465.21 444.13 239.00 1423.41 275.72 457.63 626.34 290.84 51 ER6b ExonRegion 0 44.45 179.46 26.96 69.51 22.74 45.39 32.77 13.83 6.18 13.76 70.07 57.37 42.21 42.63 78.33 12.63 23.93 12.01 54.95 18.09 23.14 27.09 3.67 52 IG20_AR3 ActiveIntergenicRegion 0 4.49 14.55 11.59 40.15 5.67 15.30 6.02 8.05 6.16 11.62 6.82 0.40 1.02 0.82 5.79 2.73 0.44 11.33 19.12 9.39 2.63 2.15 2.30