Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C20orf100 Gene 0 19.19 164.11 151.85 26.74 41.58 46.15 31.19 171.34 133.41 119.87 219.24 12.77 94.86 34.89 33.23 64.88 153.49 137.76 10.05 77.50 79.88 22.45 30.72 2 341197 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 442881 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 423191 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 372992 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 372999 Transcript 0 0.86 0.80 4.05 1.62 2.72 0.75 2.34 5.12 4.10 4.82 6.14 0.00 3.13 1.11 2.17 1.21 3.97 6.31 0.00 2.30 1.50 0.00 0.00 7 358131 Transcript 0 1.17 4.86 3.66 1.23 0.65 1.39 1.62 2.94 2.28 5.90 3.66 3.08 0.94 1.24 0.00 3.16 2.01 8.91 1.74 5.32 1.24 0.00 2.30 8 348077 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 421416 Transcript 0 1.15 0.92 2.90 0.37 1.22 0.00 0.60 4.71 3.82 4.48 11.25 0.39 4.26 1.77 2.64 1.35 4.50 4.37 0.87 1.16 2.20 0.95 0.53 10 435864 Transcript 0 0.00 0.00 1.77 3.02 0.00 0.00 0.00 3.97 6.16 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 11 413823 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1b ExonRegion 0 1.23 8.13 18.98 0.14 3.95 14.80 8.23 18.42 15.70 19.57 41.47 1.44 18.87 7.14 3.22 19.93 42.57 10.65 5.87 13.86 13.52 6.81 16.04 14 E1a_E5b KnownJunction 0 6.22 0.00 33.53 1.47 10.61 0.00 2.21 46.70 43.52 40.75 104.24 0.00 35.06 18.78 14.09 18.71 58.63 32.29 11.95 21.35 38.49 8.45 7.43 15 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.09 0.00 0.00 0.00 0.00 2.40 3.94 0.71 0.00 2.05 0.00 0.00 4.97 16 ER2b ExonRegion 0 0.00 0.35 0.27 0.00 0.00 0.00 0.00 0.34 0.00 0.17 4.71 0.00 0.23 0.00 0.00 2.17 9.10 3.74 0.00 1.50 0.00 0.05 4.15 17 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E2a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 4.02 2.40 0.00 0.00 0.00 0.00 0.00 19 ER3a ExonRegion 0 2.35 3.79 3.86 0.50 1.31 0.27 3.23 3.42 4.57 4.11 0.00 0.00 1.88 0.00 0.00 2.90 4.03 8.46 0.00 4.63 0.00 0.00 1.43 20 E3_Ab KnownBoundary 0 3.78 3.16 1.83 0.00 0.00 2.90 0.00 7.48 1.27 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 10.93 0.00 0.00 4.35 21 ER3b ExonRegion 0 0.39 2.51 1.77 0.00 0.00 0.29 2.69 3.75 3.65 4.31 0.06 0.00 0.11 0.00 0.00 2.43 4.04 4.30 1.30 4.43 0.00 0.00 1.20 22 E3a_E5b KnownJunction 0 0.00 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER4a ExonRegion 0 2.59 2.41 7.48 1.33 4.60 2.24 7.02 9.13 4.77 7.19 7.89 0.00 9.38 1.10 2.07 3.64 11.91 10.38 0.00 6.89 4.50 0.00 0.00 24 E4a_E5b KnownJunction 0 0.00 0.00 4.67 3.53 3.57 0.00 0.00 6.24 7.52 7.28 10.53 0.00 0.00 2.24 4.45 0.00 0.00 8.54 0.00 0.00 0.00 0.00 0.00 25 ER5a ExonRegion 0 1.15 0.92 2.90 0.37 1.22 0.00 0.60 4.71 3.82 4.48 11.25 0.39 4.26 1.77 2.64 1.35 4.50 4.37 0.87 1.16 2.20 0.95 0.53 26 ER5b ExonRegion 0 7.55 12.58 63.78 8.30 9.30 5.87 4.11 87.17 72.87 74.28 153.71 13.06 55.49 24.04 20.00 37.22 112.13 79.48 11.81 46.68 45.40 18.14 22.59 27 E5a_E6a KnownJunction 0 3.63 21.38 128.00 13.48 0.00 17.72 10.69 139.86 127.75 123.54 185.20 0.00 114.93 23.13 13.35 80.92 173.54 153.25 25.60 91.91 89.33 17.21 48.49 28 ER6a ExonRegion 0 4.34 41.58 129.18 16.38 21.01 40.00 18.15 141.45 136.51 134.24 254.52 13.60 98.97 42.41 31.01 70.50 204.19 175.51 18.21 89.55 111.91 23.25 46.72 29 E6a_E8a KnownJunction 0 9.85 59.13 115.70 7.29 31.15 36.46 6.05 151.40 154.66 118.46 213.42 6.00 82.62 49.80 46.36 75.71 238.43 214.65 16.38 71.84 105.33 26.09 30.90 30 ER7a ExonRegion 0 0.00 0.00 1.06 1.91 0.00 0.00 0.00 0.38 2.74 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 31 E7a_E8a KnownJunction 0 0.00 0.00 2.48 4.13 0.00 0.00 0.00 7.56 9.58 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 32 ER8a ExonRegion 0 12.51 83.68 149.42 21.47 26.88 50.61 24.71 150.81 138.44 117.35 246.44 10.32 88.25 49.94 30.38 62.64 196.95 155.96 9.01 78.39 117.83 24.03 28.53 33 E8a_E9a KnownJunction 0 22.67 196.81 263.06 52.71 120.12 117.26 61.17 271.42 242.50 164.82 457.38 19.51 138.79 84.23 42.52 129.20 305.38 275.71 17.32 142.41 165.75 50.70 58.13 34 ER9a ExonRegion 0 25.40 145.91 268.20 47.19 93.32 123.09 60.90 265.53 245.63 176.05 436.11 15.69 120.18 76.74 40.25 125.57 325.55 279.47 11.95 147.07 175.19 40.11 59.83 35 ER9b ExonRegion 0 39.23 173.49 287.25 50.70 128.97 129.18 84.23 289.54 259.65 205.07 475.19 38.58 137.57 81.93 60.54 137.58 333.90 264.43 16.28 157.92 188.05 35.79 70.74 36 E9_Ab KnownBoundary 0 62.60 242.46 346.59 57.37 174.96 182.28 110.19 332.45 271.12 241.84 490.23 52.22 162.00 96.89 50.68 131.85 341.56 249.13 21.55 165.23 173.84 47.82 63.60 37 ER9c ExonRegion 0 12.30 145.37 337.87 48.00 61.11 91.21 52.63 366.07 292.36 253.46 463.62 35.08 217.03 69.06 49.40 131.27 327.00 309.47 18.11 175.06 187.14 50.90 71.00 38 E9b_E10a KnownJunction 0 7.56 131.69 362.94 38.22 111.88 150.88 55.29 396.28 332.87 252.72 632.69 24.61 225.80 67.46 79.24 146.63 362.97 322.92 20.99 172.38 200.59 42.37 90.57 39 E9b_E11a KnownJunction 0 0.00 5.92 3.46 1.96 0.00 2.50 0.00 2.46 0.00 7.68 7.32 6.15 0.00 2.47 0.00 3.42 0.00 9.37 3.48 6.01 2.47 0.00 3.16 40 E9b_E12a KnownJunction 0 0.00 32.23 26.79 13.75 0.00 16.47 4.50 10.19 1.27 16.87 11.74 0.00 0.00 7.30 0.00 19.91 11.69 21.64 0.00 19.81 47.26 6.12 4.18 41 E10_Aa NovelBoundary 0 12.89 27.82 11.83 11.15 8.23 7.55 0.00 20.58 17.01 8.65 20.16 0.00 20.45 4.94 0.00 4.10 17.02 18.70 0.00 12.78 11.92 0.00 11.87 42 ER10a ExonRegion 0 15.78 109.61 292.44 43.51 62.93 105.36 50.93 360.82 310.72 247.19 553.81 16.94 257.14 54.80 61.89 144.24 350.22 400.23 17.62 190.28 161.66 44.17 65.19 43 E10_Da NovelBoundary 0 0.00 6.12 33.03 7.19 20.54 13.00 7.95 33.97 19.85 20.01 17.16 0.00 6.66 12.18 4.82 15.72 21.41 41.95 4.05 28.19 21.25 6.06 0.00 44 E10a_E11a KnownJunction 1 0.00 112.28 327.43 45.45 55.43 69.28 55.69 457.28 370.63 292.98 500.28 12.60 305.17 35.67 97.78 131.16 334.92 505.98 18.07 174.24 121.08 30.13 101.84 45 I10 Intron 0 6.50 11.00 20.82 6.23 7.04 9.65 5.71 28.79 21.11 17.86 22.18 2.46 10.26 4.44 4.39 9.77 18.09 28.12 2.09 17.10 18.51 4.72 11.80 46 I10_AR1 ActiveIntronRegion 0 5.35 13.38 14.30 5.09 5.99 4.60 5.16 17.81 13.81 11.32 14.07 2.54 5.40 1.48 3.39 5.23 13.16 16.38 0.00 13.87 13.60 3.65 10.41 47 I10_SR1 SilentIntronRegion 0 11.05 14.48 24.46 9.71 17.72 20.48 6.61 35.72 23.23 25.15 29.34 5.84 5.25 4.94 6.53 16.01 25.67 36.98 3.61 20.52 18.20 4.66 12.27 48 I10_AR2 ActiveIntronRegion 0 5.50 6.88 25.96 5.75 2.94 9.65 5.88 37.03 27.82 21.20 27.25 0.72 17.86 7.30 4.41 11.51 19.63 36.19 3.54 18.90 23.90 5.89 13.10 49 E11_Aa NovelBoundary 0 13.41 11.84 37.17 2.73 16.04 15.79 1.77 70.73 51.01 20.04 41.17 0.00 20.13 9.89 5.19 15.81 17.77 70.64 0.00 14.25 13.96 7.10 15.37 50 ER11a ExonRegion 0 18.94 80.09 167.00 17.31 27.97 51.98 31.51 183.84 159.99 149.79 281.81 19.76 184.06 35.35 43.80 74.03 205.16 208.61 12.12 91.88 97.30 24.20 38.87 51 E11a_E12a KnownJunction 0 14.74 104.59 137.99 19.15 35.40 73.71 27.20 138.17 116.43 83.59 228.16 0.00 45.29 26.72 8.90 54.17 123.80 108.11 0.00 63.41 64.06 14.45 4.35 52 ER12a ExonRegion 0 13.15 77.72 162.17 29.59 26.57 51.05 32.18 167.73 128.15 128.92 236.16 9.17 67.38 34.66 46.87 81.29 149.91 179.98 9.93 79.11 94.95 20.22 27.51 53 E12a_E13a KnownJunction 0 19.26 87.55 277.93 51.34 30.14 46.85 16.34 338.29 263.97 207.19 339.93 12.15 115.41 55.86 58.22 164.91 214.03 313.64 30.78 121.12 114.10 47.46 59.50 54 ER13a ExonRegion 0 40.25 400.36 213.33 48.60 80.28 61.01 49.84 251.52 170.68 152.15 251.67 14.53 94.22 44.51 46.83 81.93 160.27 130.68 11.47 92.49 80.94 29.95 32.71 55 ER13b ExonRegion 0 0.00 13.22 7.05 0.68 2.68 1.83 1.65 11.67 5.25 5.16 13.53 0.00 14.07 1.62 3.63 0.00 4.95 0.92 0.00 6.38 0.00 0.00 0.00