Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STK4 Gene 0 104.33 33.95 24.47 37.57 93.66 62.58 66.32 44.12 41.11 61.35 151.70 239.83 293.96 253.79 185.52 252.82 279.85 35.19 28.90 38.47 41.95 38.11 35.05 2 372806 Transcript 0 76.99 29.38 20.26 24.80 72.26 55.36 57.47 36.44 35.51 49.76 150.49 194.79 199.79 259.03 168.73 241.79 252.76 34.57 26.08 29.59 33.33 40.34 29.64 3 396731 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 396730 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.72 0.78 0.27 0.00 0.99 1.10 0.00 0.00 0.00 0.37 0.00 0.00 5 488618 Transcript 1 23.69 3.54 3.59 6.71 17.24 3.44 15.10 8.75 7.80 3.43 3.68 45.08 43.02 7.99 16.54 11.52 15.63 3.66 1.49 7.78 1.61 5.12 1.66 6 372801 Transcript 0 4.21 0.00 0.00 2.10 0.49 0.67 0.96 3.83 3.53 2.87 8.75 16.48 12.79 10.01 13.17 12.54 9.21 5.45 0.00 5.34 2.41 0.28 0.53 7 480745 Transcript 0 9.42 1.74 0.48 1.34 2.53 2.50 2.96 0.27 0.74 0.22 3.70 11.07 7.45 3.53 2.86 10.55 11.12 0.62 0.57 1.78 1.11 1.25 1.78 8 487587 Transcript 0 26.06 5.09 1.93 4.10 17.19 4.01 12.64 4.01 5.98 3.40 11.39 26.82 33.79 12.77 26.60 24.40 27.38 5.59 2.86 8.56 5.21 3.69 7.12 9 474717 Transcript 0 0.79 0.00 0.00 0.00 0.00 0.00 0.53 1.88 1.23 0.00 2.44 0.00 1.54 1.57 4.00 0.00 0.03 0.00 0.00 0.85 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 3.36 0.00 0.00 0.82 0.00 2.90 0.00 0.78 1.62 0.00 0.50 0.00 1.85 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 1.44 1.76 0.00 0.93 0.00 18.92 0.96 0.00 2.53 0.52 16.25 2.95 16.84 15.21 12.40 22.97 5.10 6.38 4.78 0.00 0.30 1.23 13.88 12 E1_Ad KnownBoundary 0 3.56 0.00 0.00 0.00 0.00 26.12 0.00 0.00 3.47 0.00 14.74 5.85 39.45 13.66 15.20 30.08 9.54 8.75 4.80 0.00 0.00 3.12 17.24 13 E1_Ae KnownBoundary 0 3.70 6.64 0.00 2.06 0.00 5.74 4.50 0.00 1.79 0.00 5.37 0.00 0.00 2.47 0.00 45.97 9.54 6.92 13.93 0.00 6.05 0.00 8.71 14 ER1c ExonRegion 1 10.43 8.86 2.80 2.53 7.07 47.55 13.81 1.85 7.41 6.14 57.43 4.33 23.45 55.10 51.19 108.91 45.98 17.16 27.99 4.26 14.32 4.02 44.68 15 E1_Af KnownBoundary 1 40.08 20.06 1.74 1.86 55.43 100.45 51.32 0.00 6.80 6.58 84.02 0.00 13.64 67.34 49.32 199.69 123.33 26.20 42.92 22.50 53.31 12.49 59.16 16 ER1d ExonRegion 1 25.10 18.01 7.53 4.09 26.38 84.62 33.10 5.68 11.12 16.22 95.54 4.33 30.15 103.94 89.94 185.97 105.16 24.81 48.24 12.16 37.78 10.42 67.54 17 E1_Ag KnownBoundary 1 183.74 40.19 14.58 20.81 108.06 185.46 131.96 40.66 35.73 88.43 401.42 82.83 245.76 182.24 102.97 906.09 916.41 105.46 65.60 96.71 118.61 93.93 138.72 18 ER1e ExonRegion 1 73.70 32.42 12.25 12.83 59.65 145.84 81.38 19.22 21.43 49.18 236.50 34.64 112.28 186.77 173.73 504.74 409.12 47.17 74.57 53.69 86.59 50.49 120.58 19 ER1f ExonRegion 1 124.57 39.36 12.25 16.35 89.64 178.53 106.77 30.25 31.67 72.34 307.19 68.96 229.14 252.43 211.79 702.70 720.07 49.63 74.40 73.40 122.94 68.01 130.68 20 ER1g ExonRegion 1 123.14 25.75 10.37 13.90 62.67 85.75 69.32 33.43 35.57 79.18 172.61 45.29 162.09 167.25 119.53 525.00 625.52 30.67 22.23 42.13 65.85 36.54 66.13 21 E1a_E3a KnownJunction 0 72.98 8.16 1.83 0.00 50.00 13.57 52.24 17.95 26.13 45.75 65.33 17.26 66.72 166.34 125.72 285.22 256.76 2.32 3.86 3.26 14.46 2.57 28.26 22 ER2a ExonRegion 0 1.59 0.00 0.00 0.00 0.00 0.00 1.06 1.22 0.66 0.00 0.66 0.00 3.08 0.66 2.31 0.00 0.05 0.00 0.00 1.70 0.00 0.00 0.00 23 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.79 0.00 4.21 0.00 0.00 2.47 5.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER3a ExonRegion 1 46.09 5.55 13.68 11.79 33.86 22.39 22.38 26.37 36.17 57.05 196.70 202.84 225.58 120.65 69.63 143.98 405.60 9.76 11.17 24.06 56.94 9.18 24.91 25 E3_Da KnownBoundary 0 38.67 0.00 14.55 3.70 15.03 0.00 3.97 5.75 8.77 3.33 9.79 12.45 0.00 9.42 0.00 12.13 87.89 8.54 0.00 3.07 19.83 9.12 4.35 26 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 7.69 0.00 0.00 0.00 0.00 8.03 4.30 0.00 0.00 0.00 0.00 0.00 0.00 28 E3a_E6a KnownJunction 1 13.19 8.88 14.78 20.58 24.62 58.89 19.92 38.32 53.41 110.35 393.05 208.12 198.36 138.62 88.51 236.09 1034.13 18.57 52.90 63.60 108.79 13.35 76.14 29 ER3b ExonRegion 0 23.69 3.54 3.59 6.71 17.24 3.44 15.10 8.75 7.80 3.43 3.68 45.08 43.02 7.99 16.54 11.52 15.63 3.66 1.49 7.78 1.61 5.12 1.66 30 E3_Db NovelBoundary 0 60.31 2.50 1.83 8.49 26.83 0.00 11.92 0.00 1.71 2.63 2.42 19.51 37.34 2.47 10.01 0.00 9.54 4.35 0.00 5.62 8.59 0.00 0.00 31 ER4a ExonRegion 0 28.27 5.22 1.43 4.02 7.60 7.51 8.89 0.82 2.22 0.66 11.11 33.22 22.36 10.60 8.58 31.66 33.36 1.85 1.71 5.33 3.34 3.75 5.35 32 E4_Ab KnownBoundary 0 81.13 6.05 4.46 6.96 11.29 10.51 6.36 2.55 6.68 2.90 12.42 30.46 27.27 26.66 14.09 14.36 33.75 4.15 0.00 23.59 14.83 17.64 4.27 33 ER4b ExonRegion 0 37.42 1.76 4.55 6.31 14.57 1.68 15.58 4.45 5.94 3.49 16.50 35.85 31.44 22.84 27.50 25.69 44.31 6.23 0.00 8.01 7.26 10.89 6.21 34 E4a_E5a KnownJunction 0 7.56 0.00 1.09 3.53 6.96 0.00 4.46 5.09 4.40 0.00 4.74 6.00 29.38 9.42 25.22 26.92 27.21 4.27 0.00 3.26 2.84 0.00 3.24 35 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E5_Aa NovelBoundary 0 82.09 96.63 39.15 50.11 62.99 47.64 149.40 64.20 62.59 64.98 21.53 51.32 48.86 12.01 19.53 59.39 80.32 61.19 18.73 82.96 38.67 31.23 45.67 37 ER5a ExonRegion 1 54.07 13.66 3.46 5.05 41.93 10.45 27.12 4.11 13.18 7.66 20.00 54.35 62.05 24.27 55.15 38.84 39.94 9.48 7.50 17.36 10.37 8.77 15.84 38 E5_Ab KnownBoundary 0 70.68 7.89 1.54 7.03 42.28 4.32 16.65 6.45 12.64 2.82 22.64 69.92 77.75 22.60 40.55 20.93 39.83 5.43 0.00 14.57 11.80 4.90 6.91 39 ER5b ExonRegion 1 35.26 1.12 2.43 13.68 31.77 9.62 26.60 10.64 14.17 4.53 16.77 59.97 47.60 16.02 36.09 32.03 32.33 7.40 1.57 11.66 8.02 9.12 7.70 40 E5_Da KnownBoundary 0 12.82 0.00 1.60 15.72 11.46 8.69 17.75 12.61 16.98 5.56 9.74 49.37 52.76 19.60 37.09 58.79 36.19 6.51 4.24 15.34 2.47 5.69 10.93 41 ER5c ExonRegion 0 42.62 6.70 3.17 7.80 19.87 5.57 18.98 6.83 4.55 5.94 13.14 46.95 43.72 17.40 26.05 23.82 38.07 8.61 3.96 13.61 7.63 5.98 9.38 42 E6_Aa NovelBoundary 0 24.60 2.43 0.00 8.52 35.14 4.94 16.83 8.71 1.79 7.60 11.90 25.51 26.62 4.89 4.45 16.32 29.55 2.11 0.00 21.35 5.75 0.00 11.35 43 ER6a ExonRegion 0 31.17 19.15 15.01 35.61 56.71 55.07 55.60 52.89 57.73 100.00 269.17 416.33 651.73 351.04 216.92 610.00 629.65 60.82 40.40 64.89 47.29 60.60 99.85 44 E6a_E7a KnownJunction 1 48.68 20.00 30.69 32.16 82.43 139.41 124.10 54.01 64.21 101.30 257.33 751.29 1147.98 302.73 208.30 221.74 501.45 25.74 26.92 86.10 38.43 75.93 14.77 45 E6a_E8a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 2.68 0.00 21.59 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER7a ExonRegion 1 64.71 44.83 21.84 46.67 86.95 93.67 102.37 56.26 68.10 101.78 185.49 650.62 820.02 279.76 176.12 175.36 409.86 18.98 12.71 61.83 16.90 47.43 25.26 47 E7a_E8a KnownJunction 1 87.57 85.12 23.92 43.12 69.44 49.91 130.85 81.08 78.01 92.57 190.79 739.89 817.80 375.95 292.48 257.28 373.35 27.23 22.31 82.90 11.68 65.83 24.84 48 ER8a ExonRegion 1 119.59 60.32 40.37 57.69 119.19 93.56 116.89 84.92 94.66 123.21 296.76 1206.56 1443.65 533.22 274.95 450.50 549.61 53.64 33.94 85.16 54.33 94.81 52.17 49 E8a_E9a KnownJunction 0 92.16 40.06 31.28 59.87 63.16 72.23 64.04 90.12 108.07 134.39 332.40 797.06 947.50 545.53 336.86 770.91 585.23 93.85 36.14 76.25 91.00 89.89 86.13 50 E9_Aa NovelBoundary 0 9.71 3.35 2.96 9.52 45.67 2.61 14.00 2.55 0.00 5.26 0.00 6.15 6.49 0.00 17.80 15.64 4.49 0.00 0.00 0.00 0.00 0.00 0.00 51 ER9a ExonRegion 0 61.70 49.58 37.95 53.52 76.18 52.65 80.70 69.74 69.05 124.32 365.82 961.47 866.80 567.24 253.73 553.22 725.20 80.66 19.50 86.04 95.96 66.58 77.11 52 E9_Da KnownBoundary 1 73.12 71.83 59.84 51.61 121.14 76.43 126.75 66.83 60.33 121.82 377.99 1136.02 1032.89 515.39 233.88 472.01 703.97 50.57 21.46 91.15 105.95 61.72 68.97 53 ER9b ExonRegion 0 82.46 54.87 45.23 51.34 111.70 93.15 103.72 73.17 83.78 98.95 305.97 727.18 761.99 461.79 220.24 469.36 621.02 71.88 23.48 62.33 79.66 72.49 64.23 54 E9b_E11a KnownJunction 0 228.48 98.01 53.75 60.23 215.79 111.64 156.87 77.51 85.88 103.53 423.21 830.22 1049.12 723.77 372.83 1072.03 822.63 98.58 39.91 97.28 109.72 98.59 158.35 55 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.72 0.78 0.27 0.00 0.99 1.10 0.00 0.00 0.00 0.37 0.00 0.00 56 ER11a ExonRegion 0 71.49 47.10 30.94 48.16 122.66 77.03 86.45 58.47 64.41 91.10 291.18 515.61 712.44 577.03 257.62 544.42 560.32 60.39 19.85 56.17 96.45 56.99 68.27 57 E11a_E12a KnownJunction 0 55.05 11.97 15.70 28.23 67.32 71.44 48.23 66.95 53.67 99.31 227.69 379.02 308.75 440.70 209.16 373.24 382.51 63.22 9.04 50.49 84.33 51.01 57.71 58 ER12a ExonRegion 0 62.99 40.70 24.20 41.47 104.04 87.84 62.06 44.36 56.53 87.95 255.47 486.91 643.37 604.02 293.59 478.03 553.91 74.41 27.56 69.95 112.90 51.46 61.03 59 E12_Da NovelBoundary 0 13.48 3.35 1.57 19.05 10.78 0.00 17.22 4.60 4.77 10.56 13.58 42.76 40.58 63.22 39.06 75.36 47.22 20.85 4.33 5.56 20.51 14.27 16.56 60 E12a_E13a KnownJunction 0 76.53 62.29 23.71 44.08 60.44 46.17 28.13 52.86 61.23 98.31 278.18 329.66 440.23 470.42 214.72 581.47 597.57 70.01 12.99 52.60 96.19 48.99 76.74 61 I12 Intron 0 19.22 6.58 3.89 8.82 19.43 5.36 22.05 10.37 8.28 9.18 25.03 59.94 67.58 51.89 30.33 42.00 44.83 6.39 1.01 7.73 6.61 11.84 10.66 62 I12_AR1 ActiveIntronRegion 0 16.21 5.37 2.90 7.82 17.03 4.83 19.57 8.00 7.63 8.84 22.95 54.51 57.24 51.65 28.19 42.79 49.67 7.92 1.38 7.39 8.13 10.52 9.57 63 I12_SR1 SilentIntronRegion 0 27.55 9.92 6.63 11.62 26.11 6.83 29.03 16.89 10.15 10.18 30.92 75.29 96.28 53.11 36.45 40.36 32.23 2.34 0.00 8.73 2.57 15.55 13.75 64 E13_Aa NovelBoundary 0 17.19 0.00 9.93 11.25 7.30 10.28 15.55 9.49 12.99 9.64 32.22 75.77 87.98 81.94 27.44 36.57 35.16 15.96 4.80 18.02 6.24 17.88 15.45 65 ER13a ExonRegion 0 60.22 33.06 26.32 42.24 79.69 50.53 60.73 48.55 59.51 80.44 290.62 372.87 400.03 491.27 231.34 453.54 566.48 89.05 21.57 82.28 102.95 48.23 57.05 66 E13a_E14a KnownJunction 0 116.09 39.40 36.69 52.07 77.42 68.20 93.76 69.87 86.75 88.97 388.99 361.47 362.31 531.17 295.57 727.59 639.55 103.84 7.91 69.03 76.91 94.36 73.07 67 ER14a ExonRegion 0 63.19 36.28 22.76 46.99 94.62 91.54 73.04 53.64 66.32 94.43 322.90 419.82 270.75 542.63 235.70 509.61 545.73 89.79 40.22 87.42 74.94 57.61 60.74 68 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 1.16 0.00 9.21 31.06 0.00 12.77 17.80 25.12 23.00 4.27 0.00 3.26 3.03 0.00 0.00 69 E14a_E16a KnownJunction 0 63.72 36.90 22.12 17.35 71.99 70.70 79.01 44.15 50.09 64.09 253.49 320.35 252.58 456.59 230.55 399.30 416.83 59.49 34.35 43.59 47.75 70.42 44.64 70 ER15a ExonRegion 0 8.54 1.23 0.00 1.90 4.84 2.05 3.03 2.67 4.57 1.71 10.26 18.04 10.16 14.44 13.50 25.16 16.35 2.11 0.00 8.46 0.87 0.00 0.00 71 E15_Da NovelBoundary 0 13.04 0.00 0.00 2.80 0.00 2.21 3.89 1.73 2.86 1.13 2.21 13.20 6.01 2.30 13.85 7.60 0.00 0.00 0.00 22.43 2.97 0.00 4.35 72 E15b_E16a KnownJunction 0 3.04 0.00 0.00 1.47 0.00 0.00 0.00 3.57 3.24 2.61 7.84 18.01 13.64 11.30 10.51 12.65 8.51 7.21 0.00 2.36 2.41 0.00 0.00 73 ER15b ExonRegion 0 5.39 0.00 0.00 2.73 0.97 1.33 1.93 4.09 3.82 3.13 9.66 14.96 11.94 8.71 15.83 12.43 9.90 3.70 0.00 8.32 2.40 0.57 1.07 74 ER16a ExonRegion 0 49.96 30.72 15.88 26.69 78.01 83.32 73.17 39.12 44.92 78.13 213.72 258.42 286.81 451.24 194.14 342.15 373.50 55.84 44.24 49.27 62.05 54.22 39.80 75 E16_Da KnownBoundary 1 63.05 57.16 25.78 33.20 80.73 102.67 127.32 50.15 40.65 104.65 199.79 355.62 554.35 343.64 126.09 294.54 306.12 39.80 39.44 38.93 88.65 59.58 25.27 76 ER16b ExonRegion 0 167.24 51.24 38.67 57.04 144.80 92.02 93.41 65.16 55.61 85.19 195.09 264.01 346.02 318.88 275.65 325.59 341.45 42.38 43.89 45.17 52.24 50.60 44.27