Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SGK2 Gene 0 2.55 1.74 3.06 13.00 8.47 7.23 4.27 6.67 20.21 14.16 1.02 0.52 0.17 0.35 0.64 0.61 0.53 1.76 11.86 0.63 6.71 3.59 6.61 2 373100 Transcript 0 0.79 0.37 0.24 4.70 1.60 1.55 1.80 1.98 8.99 6.42 0.18 0.00 0.00 0.45 0.00 0.66 0.00 0.91 6.58 0.23 4.34 1.29 4.16 3 373092 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 496343 Transcript 0 0.45 0.31 0.24 2.27 2.13 0.51 1.37 1.49 2.45 1.10 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.24 1.58 0.09 0.09 0.22 0.13 5 423407 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 373077 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 412111 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 341458 Transcript 0 2.95 0.97 1.83 14.49 6.13 7.97 3.97 7.27 18.83 14.28 1.58 1.24 0.45 0.52 0.90 0.74 1.09 0.85 15.69 0.49 9.13 5.99 13.73 9 426287 Transcript 0 0.00 3.16 0.00 2.06 0.00 2.78 0.00 0.00 1.79 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.60 0.00 0.00 0.00 0.00 10 485914 Transcript 0 0.00 0.00 0.35 0.00 0.00 0.00 0.02 0.98 1.41 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 11 IG13_AR1 ActiveIntergenicRegion 0 1.71 0.00 1.48 13.97 19.49 5.20 10.72 4.17 8.94 4.15 0.78 4.33 1.56 0.00 2.83 1.20 2.67 0.00 7.74 0.86 0.89 2.53 7.11 12 ER1a ExonRegion 0 0.00 0.00 0.00 7.65 2.18 1.25 0.46 2.24 6.98 5.75 0.00 0.00 0.00 0.91 0.00 1.98 0.00 1.97 3.95 0.00 6.52 1.03 4.50 13 E1_Ab KnownBoundary 0 0.00 0.00 0.00 5.49 3.65 0.00 0.00 2.55 6.51 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 2.82 7.17 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ad KnownBoundary 0 0.00 0.00 0.00 10.75 0.00 0.00 0.00 2.55 12.47 7.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 13.08 0.00 9.27 2.39 7.51 16 ER1b ExonRegion 0 0.00 0.00 0.00 14.99 5.35 0.00 1.32 5.19 20.38 12.04 0.00 0.00 0.00 0.00 0.00 0.74 0.00 3.70 12.74 0.00 9.37 2.60 12.48 17 ER1c ExonRegion 0 0.00 0.00 0.00 13.63 6.35 1.83 2.32 5.19 21.46 14.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.54 12.74 0.00 8.26 4.17 14.68 18 ER1d ExonRegion 0 3.12 0.00 0.00 9.77 1.66 6.99 2.02 2.72 14.00 11.77 0.00 1.73 0.00 0.53 0.00 1.44 0.00 2.27 9.65 0.00 8.14 2.90 9.43 19 E1_Da NovelBoundary 0 3.26 0.00 5.17 4.99 7.72 0.00 0.00 5.79 17.77 17.16 0.00 0.00 0.00 2.30 0.00 0.00 4.11 2.20 13.18 0.00 8.46 5.88 19.80 20 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E1a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 I1 Intron 0 4.89 1.46 1.41 14.07 11.01 6.82 4.04 8.14 20.67 15.25 0.51 0.73 1.26 0.28 0.81 0.55 0.61 1.83 14.12 1.24 6.08 4.04 11.23 23 I1_SR1 SilentIntronRegion 0 5.07 1.57 1.46 13.35 11.01 6.62 3.96 8.46 20.59 15.28 0.51 0.60 1.08 0.27 0.78 0.53 0.68 2.04 14.33 1.20 6.33 3.95 10.95 24 I1_AR1 ActiveIntronRegion 0 3.30 0.53 0.95 20.61 11.14 8.59 4.82 5.36 21.55 15.11 0.50 1.86 2.87 0.35 1.07 0.77 0.00 0.00 12.43 1.66 4.01 4.88 13.75 25 E2_Aa NovelBoundary 0 14.45 0.00 0.00 12.02 3.74 4.83 12.28 4.64 15.74 18.56 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 12.14 0.00 10.69 0.00 12.12 26 ER2a ExonRegion 0 2.38 1.11 0.73 6.46 2.63 3.41 4.94 3.71 19.99 13.52 0.53 0.00 0.00 0.44 0.00 0.00 0.00 0.75 15.79 0.69 6.49 2.84 7.98 27 E2_Ab KnownBoundary 0 2.82 0.00 2.84 7.56 4.33 13.46 9.94 3.53 28.18 20.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 2.56 5.56 0.00 4.10 28 ER2b ExonRegion 0 1.57 0.00 2.45 3.97 7.38 2.37 5.00 1.73 10.16 7.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.31 1.50 6.46 0.00 0.15 29 E2_Da NovelBoundary 0 0.00 0.00 0.00 8.22 3.99 0.00 2.25 10.15 19.10 20.31 2.47 5.40 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 8.22 2.33 12.04 30 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 3.90 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 I2 Intron 0 1.36 0.29 0.91 6.68 3.45 4.59 1.33 2.76 16.19 14.55 1.11 0.98 0.55 0.00 0.21 0.85 0.47 0.72 10.03 0.46 8.20 2.38 6.30 32 I2_SR1 SilentIntronRegion 0 1.63 0.19 1.03 7.29 3.98 5.32 1.10 2.90 17.53 15.64 1.09 0.29 0.72 0.00 0.00 1.11 0.05 0.46 9.85 0.33 8.33 2.32 6.17 33 I2_AR1 ActiveIntronRegion 0 2.12 0.16 0.00 4.72 0.62 0.71 2.39 0.00 18.00 17.25 0.00 0.00 0.00 0.00 1.12 0.00 3.30 1.35 7.11 3.52 8.56 4.09 15.59 34 I2_AR2 ActiveIntronRegion 0 0.20 0.69 0.66 4.77 1.94 2.55 2.03 2.79 10.81 9.95 1.40 3.87 0.00 0.00 0.82 0.00 1.57 1.61 11.30 0.36 7.66 2.33 5.12 35 E3_Aa NovelBoundary 0 3.41 0.00 8.99 19.74 0.00 16.75 5.96 4.89 28.07 24.04 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 22.78 0.00 4.70 11.63 24.16 36 ER3a ExonRegion 0 3.80 0.94 1.27 15.49 5.58 6.58 4.19 7.68 17.38 16.16 0.90 2.48 0.90 0.62 0.78 0.00 0.77 1.70 14.49 0.99 6.87 6.22 11.24 37 E3_Ab KnownBoundary 0 13.19 0.00 0.00 17.65 0.00 2.90 4.11 7.27 19.01 11.66 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 7.81 0.00 10.50 2.33 11.69 38 ER3b ExonRegion 0 2.51 0.64 0.07 14.39 0.00 2.21 1.67 5.31 16.47 13.21 1.15 0.00 0.00 0.45 0.70 0.00 0.43 0.00 5.90 0.00 3.75 0.23 9.90 39 E3_Da KnownBoundary 0 0.00 0.00 0.00 9.39 0.00 0.00 0.00 9.65 13.60 16.33 2.63 0.00 0.00 2.47 0.00 0.00 3.55 2.40 8.75 0.00 2.72 0.00 12.04 40 E3a_E3c KnownJunction 0 0.00 3.16 0.00 2.06 0.00 2.78 0.00 0.00 1.79 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.60 0.00 0.00 0.00 0.00 41 ER3c ExonRegion 0 2.10 1.01 2.39 13.50 6.68 9.35 3.75 6.86 20.29 12.40 2.27 0.00 0.00 0.43 1.01 1.47 1.41 0.00 16.89 0.00 11.38 5.77 16.22 42 E3_Ac KnownBoundary 0 0.00 0.00 2.60 17.45 0.00 2.90 5.96 6.70 19.59 14.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.05 0.00 15.07 5.51 28.00 43 ER3d ExonRegion 0 1.75 1.19 0.68 13.32 9.27 2.66 2.74 6.65 19.53 17.38 0.00 0.00 0.00 0.00 0.00 0.26 2.16 1.05 13.35 0.00 11.74 4.81 16.15 44 E3b_E4a KnownJunction 0 0.00 0.00 0.00 10.82 3.74 0.00 4.46 8.87 24.83 21.97 0.00 0.00 0.00 0.00 0.00 0.00 4.11 2.07 7.53 0.00 17.61 2.57 4.35 45 ER4a ExonRegion 0 0.13 0.16 2.94 9.76 0.75 6.71 2.33 12.24 29.52 20.83 0.00 0.00 0.00 0.00 0.00 3.57 0.86 5.25 20.58 2.43 12.74 3.08 15.45 46 E4a_E5a KnownJunction 0 0.00 0.00 5.56 10.06 0.00 18.17 4.24 12.69 33.01 16.41 0.00 0.00 0.00 0.00 0.00 3.85 0.00 2.57 41.98 6.26 13.84 5.82 15.62 47 ER5a ExonRegion 0 2.26 1.65 8.81 21.12 1.48 14.42 3.97 10.97 31.05 21.59 1.87 0.00 0.00 0.00 0.60 1.90 0.00 3.79 19.83 1.83 12.54 5.35 11.80 48 E5a_E6a KnownJunction 0 10.45 0.00 8.22 30.73 14.35 18.80 1.81 1.73 31.86 36.61 0.00 0.00 0.00 0.00 5.32 0.00 0.00 1.70 8.09 0.00 14.46 5.08 15.45 49 ER6a ExonRegion 0 4.54 2.15 2.36 20.15 7.10 8.91 4.05 8.58 28.16 25.35 3.08 0.00 0.00 0.00 1.35 1.38 0.31 1.89 5.04 1.49 11.91 4.94 12.52 50 E6a_E7a KnownJunction 0 3.56 2.63 1.60 18.41 0.00 5.22 6.09 10.06 32.90 13.75 2.37 0.00 0.00 0.00 0.00 3.67 3.65 0.00 0.00 0.00 7.72 7.78 7.68 51 E6a_E7b KnownJunction 0 0.00 0.00 0.00 1.86 0.00 2.90 5.03 0.00 1.79 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 0.00 0.00 0.00 52 ER7a ExonRegion 0 3.17 4.07 2.14 21.12 0.00 5.04 4.96 7.35 34.58 15.20 1.93 0.00 0.00 0.00 0.00 2.97 3.30 0.00 9.56 0.53 15.43 6.25 7.34 53 ER7b ExonRegion 0 3.24 0.13 8.47 24.73 4.89 12.61 4.56 7.08 34.55 26.55 0.91 0.00 0.00 0.84 0.97 0.29 1.59 5.41 20.17 3.55 16.21 5.14 1.70 54 E7_Ac KnownBoundary 0 3.33 0.00 15.49 21.44 7.13 11.24 0.00 8.05 27.20 22.13 4.63 0.00 0.00 0.00 4.45 0.00 0.00 5.14 17.32 0.00 7.78 3.06 4.35 55 ER7c ExonRegion 0 2.07 0.00 9.41 18.94 7.91 6.63 1.24 5.00 21.13 17.72 3.04 0.00 0.00 0.00 0.56 0.00 2.32 6.05 10.57 0.63 11.53 6.96 1.87 56 E7a_E8a KnownJunction 0 3.04 0.00 1.83 19.78 4.16 4.32 1.68 4.07 19.65 14.94 0.00 0.00 0.00 0.00 0.00 0.00 4.58 4.89 15.62 2.62 19.34 14.51 0.00 57 ER8a ExonRegion 0 1.48 0.92 5.55 12.11 0.45 7.85 1.79 6.45 30.30 22.18 1.33 0.00 0.00 0.00 1.44 1.34 0.53 2.58 11.81 0.77 10.65 5.27 5.74 58 E8_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E8a_E9a KnownJunction 0 6.67 0.00 1.77 14.58 0.00 8.69 4.15 11.17 25.12 24.93 2.68 0.00 0.00 0.00 4.45 0.00 0.00 7.67 32.57 0.00 18.66 2.94 8.19 60 ER8b ExonRegion 0 0.00 0.00 0.35 0.00 0.00 0.00 0.02 0.98 1.41 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 61 ER9a ExonRegion 0 2.17 0.00 6.39 13.30 1.95 9.02 5.30 7.43 25.97 28.39 2.19 0.00 0.00 1.27 1.25 0.00 0.00 5.54 26.52 0.00 12.75 3.89 4.21 62 E9a_E10a KnownJunction 0 3.78 0.00 8.49 7.56 8.49 7.95 8.17 9.04 19.04 17.57 2.37 0.00 0.00 3.00 0.00 0.00 0.00 0.00 27.48 0.00 11.12 5.51 4.27 63 ER10a ExonRegion 0 1.87 3.18 4.87 18.55 20.14 12.48 5.11 9.14 32.99 20.08 1.87 0.00 0.00 0.41 1.20 0.00 0.00 1.78 21.27 1.25 10.33 6.95 6.14 64 E10a_E11a KnownJunction 0 0.00 3.16 1.74 7.59 30.56 9.71 7.33 8.21 54.66 17.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 12.52 0.00 26.13 3.06 12.29 65 ER11a ExonRegion 0 1.12 1.44 5.57 14.42 8.00 4.81 3.89 9.15 37.75 20.08 0.04 0.41 0.00 0.64 0.00 0.00 0.69 4.23 9.99 0.00 13.45 4.02 7.62 66 E11a_E12a KnownJunction 0 0.00 0.00 9.85 26.24 0.00 5.79 0.00 0.00 35.88 22.32 0.00 6.00 0.00 2.71 0.00 0.00 4.77 2.57 21.08 0.00 8.83 0.00 12.98 67 ER12a ExonRegion 0 0.34 2.82 2.56 16.89 11.68 2.95 5.37 6.88 32.26 23.45 3.38 1.00 0.00 1.38 1.84 0.00 1.12 1.43 21.71 1.39 10.75 2.72 5.16 68 E12a_E13a KnownJunction 0 6.96 12.76 1.69 32.40 38.12 5.05 6.45 17.74 38.17 23.56 2.68 0.00 0.00 0.00 4.45 0.00 4.77 0.00 26.17 0.00 18.90 0.00 14.94 69 E12b_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 0.00 0.00 0.00 0.00 70 ER12b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.30 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 ER13a ExonRegion 0 2.28 6.46 1.69 25.62 20.28 16.99 16.68 11.31 41.53 23.44 0.67 1.88 0.00 2.04 0.77 0.00 1.06 1.50 43.29 1.21 13.49 5.49 7.99 72 E13a_E14a KnownJunction 0 3.78 2.57 0.00 15.52 12.14 5.56 12.90 10.39 32.15 18.13 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 13.46 0.00 6.12 8.27 0.00 73 ER14a ExonRegion 0 4.56 3.80 6.43 18.13 15.77 14.02 7.46 10.23 26.13 18.89 1.17 0.98 0.55 0.29 1.35 1.42 0.94 2.44 14.09 0.45 7.10 5.63 9.99 74 E14_Da KnownBoundary 0 20.45 6.51 4.41 4.13 15.53 19.93 3.75 6.82 18.37 13.94 2.68 0.00 0.00 0.00 0.00 3.85 0.00 0.00 22.68 0.00 3.03 2.88 12.55 75 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER14b ExonRegion 0 8.80 1.36 2.06 8.44 12.61 13.19 6.37 9.11 20.62 11.96 1.26 0.34 0.00 0.00 0.00 0.66 0.00 0.00 15.72 0.00 3.74 2.32 5.41 77 E14_Db KnownBoundary 0 10.89 0.00 3.13 24.51 27.59 28.39 8.48 13.88 27.08 14.56 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.73 0.00 3.09 8.82 8.28 78 ER14c ExonRegion 0 3.06 0.00 0.00 8.72 13.56 13.69 3.24 4.99 9.41 3.24 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.02 0.00 1.13 4.58 2.81 79 E14_Dc NovelBoundary 0 3.78 0.00 4.52 29.53 8.15 10.62 4.24 10.23 14.41 11.44 0.00 0.00 0.00 0.00 0.00 0.00 4.11 1.58 4.80 0.00 3.15 2.63 12.89 80 I14 Intron 0 3.20 0.77 3.04 10.45 5.26 6.52 3.01 5.07 14.21 7.76 1.32 0.27 0.00 0.19 0.15 0.45 0.00 0.35 13.50 0.48 3.00 1.73 5.78 81 I14_SR1 SilentIntronRegion 0 1.51 1.15 2.57 12.83 6.03 5.31 4.18 6.14 19.63 9.36 1.09 0.36 0.00 0.38 0.00 0.00 0.00 0.13 17.37 0.83 4.14 1.76 5.45 82 I14_AR1 ActiveIntronRegion 0 12.36 0.00 0.00 10.90 4.01 14.77 1.99 6.91 14.78 5.67 1.35 2.09 0.00 0.00 1.40 0.00 0.00 1.25 18.54 3.12 8.19 1.12 17.93 83 I14_AR5 ActiveIntronRegion 0 3.99 0.96 4.84 15.61 6.78 8.48 3.54 7.57 20.92 11.19 2.63 0.00 0.00 0.01 0.00 0.93 0.00 0.86 13.03 0.00 2.47 3.83 3.84 84 I14_AR6 ActiveIntronRegion 0 2.96 1.40 6.70 10.23 7.64 3.63 0.90 1.91 7.93 5.00 1.48 0.00 0.00 0.54 0.00 0.00 0.00 0.00 13.79 0.00 1.09 1.07 1.14 85 ER15a ExonRegion 0 1.80 1.22 0.94 9.08 8.51 2.06 1.92 4.65 9.17 4.41 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.95 2.47 0.37 0.38 0.90 0.51