Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP3-477O4.3 Gene 0 51.08 8.03 3.33 8.15 22.61 9.25 12.71 7.20 5.82 4.05 19.85 16.55 24.89 23.73 41.81 47.34 26.69 5.42 6.39 7.37 4.15 2.28 7.32 2 453914 Transcript 0 67.02 3.22 1.36 7.13 23.22 6.52 7.48 5.18 4.53 1.65 21.66 6.90 17.50 20.07 49.11 60.22 25.20 4.92 6.95 1.42 2.24 0.00 3.20 3 416260 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 444933 Transcript 0 20.23 19.43 1.85 4.67 13.82 13.38 22.87 5.75 2.69 3.72 10.51 12.17 7.84 10.59 18.56 27.59 18.94 5.18 9.75 15.56 9.52 5.98 17.97 5 416903 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 1 179.87 9.06 2.89 18.91 52.89 16.27 18.85 10.05 9.59 4.95 53.70 0.00 5.72 46.21 116.68 160.08 59.36 13.94 20.26 4.22 6.71 0.00 9.59 7 E1_Ab KnownBoundary 0 121.65 6.12 4.76 18.31 35.65 7.67 16.12 4.64 12.53 7.82 17.37 0.00 0.00 5.06 17.43 47.08 46.10 12.52 7.91 2.68 2.53 0.00 0.00 8 E1_Ac KnownBoundary 1 42.30 6.58 1.39 15.85 15.96 4.77 0.00 6.65 4.69 3.09 4.90 0.00 0.00 0.00 23.73 16.15 4.49 2.57 15.81 0.00 0.00 0.00 7.94 9 ER1b ExonRegion 1 213.77 13.22 4.90 31.35 74.92 12.84 18.54 17.28 14.82 8.03 65.72 0.00 0.00 22.74 72.53 156.04 72.62 17.55 28.67 8.51 2.20 0.00 16.15 10 ER1c ExonRegion 0 52.15 8.90 2.93 18.14 22.77 8.30 7.25 10.54 7.98 4.59 10.77 0.00 9.23 10.20 21.26 23.29 13.58 7.88 20.42 7.67 2.06 0.00 13.48 11 E1_Da NovelBoundary 0 16.82 12.04 10.91 26.97 0.00 9.37 0.00 10.02 3.59 9.05 7.84 0.00 6.01 0.00 13.35 20.68 12.16 17.41 16.38 5.82 6.30 0.00 7.68 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.32 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 Ix Intron 0 39.45 7.44 4.96 13.28 19.66 4.39 11.65 7.84 6.73 5.53 7.57 14.35 28.49 14.47 25.80 29.14 17.09 7.41 12.06 11.02 1.78 0.81 6.27 16 Ix_SR1 SilentIntronRegion 0 39.48 7.44 4.97 13.28 19.67 4.39 11.66 7.84 6.73 5.53 7.57 14.36 28.51 14.48 25.81 29.16 17.10 7.41 12.07 11.02 1.79 0.81 6.28 17 E2_Aa NovelBoundary 1 24.30 2.76 1.63 5.36 12.99 2.67 8.26 0.00 3.30 1.07 0.00 6.30 20.29 14.60 34.12 39.99 4.77 7.96 4.80 5.88 0.00 2.27 7.94 18 ER2a ExonRegion 0 60.70 58.29 5.54 14.01 41.45 40.15 68.62 17.26 8.06 11.15 26.20 36.50 23.52 31.76 51.24 82.76 52.05 15.55 29.26 46.68 28.55 17.95 53.90 19 E2_Ab KnownBoundary 0 1202.88 1438.16 1694.94 1964.88 1280.05 888.86 1863.05 1711.19 1541.36 1337.56 402.89 352.92 309.56 242.81 391.50 1213.27 860.78 2270.24 897.81 1445.74 624.26 400.04 916.46 20 ER2b ExonRegion 0 26.69 25.72 1.93 13.73 38.10 18.07 31.14 13.16 5.88 9.13 12.85 20.61 18.24 23.97 55.71 49.10 32.95 8.18 9.91 20.57 13.55 13.81 16.10 21 E2_Da NovelBoundary 0 63.05 6.71 0.00 3.06 34.55 7.61 11.13 10.47 2.72 0.00 2.16 6.30 6.82 9.18 8.90 15.04 7.85 0.00 4.33 2.68 9.14 0.00 4.35 22 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 24 Ix Intron 1 153.46 7.24 2.53 18.46 46.00 7.61 15.17 9.16 8.73 4.39 12.61 37.66 151.79 33.07 54.18 84.61 27.39 7.81 12.59 15.14 3.05 2.06 9.29 25 Ix_SR1 SilentIntronRegion 0 154.06 7.26 2.54 18.53 46.17 7.64 15.23 9.20 8.77 4.41 12.66 37.80 152.38 33.20 54.39 84.92 27.50 7.84 12.64 15.20 3.06 2.07 9.32 26 Ix Intron 0 39.01 0.51 3.69 4.10 14.86 2.31 5.35 8.45 5.58 1.73 15.62 16.07 31.90 33.87 41.24 51.76 22.50 3.71 0.00 1.07 2.78 0.00 1.48 27 Ix_SR1 SilentIntronRegion 0 39.39 0.52 3.73 4.14 15.01 2.34 5.40 8.54 5.63 1.74 15.77 16.21 32.17 34.20 41.60 52.28 22.71 3.75 0.00 1.09 2.81 0.00 1.50 28 Ix Intron 0 21.49 1.88 1.69 5.16 11.73 2.54 7.94 4.76 2.97 3.94 4.01 6.58 18.02 25.49 29.62 50.75 25.14 4.67 4.41 5.89 0.51 0.00 5.42 29 Ix_SR1 SilentIntronRegion 0 21.68 1.89 1.70 5.20 11.84 2.56 8.02 4.79 3.00 3.98 4.05 6.64 18.18 25.70 29.86 51.20 25.37 4.71 4.45 5.95 0.51 0.00 5.47 30 Ix Intron 0 22.48 1.22 0.91 4.27 16.09 3.67 6.10 3.36 2.03 2.57 8.33 7.22 10.24 29.38 31.58 28.89 12.90 0.83 0.00 4.90 0.66 0.00 0.29 31 Ix_SR1 SilentIntronRegion 0 22.57 1.23 0.92 4.29 16.15 3.69 6.13 3.37 2.04 2.58 8.36 7.25 10.28 29.49 31.71 29.00 12.95 0.83 0.00 4.92 0.67 0.00 0.30 32 E3_Aa NovelBoundary 0 35.34 43.68 63.30 93.03 44.14 66.55 36.74 51.18 44.85 56.71 34.32 24.46 39.77 58.21 67.00 108.01 34.03 134.18 88.57 87.18 33.42 25.17 81.27 33 ER3a ExonRegion 0 46.85 0.00 2.33 2.59 8.07 2.34 0.58 0.00 1.56 2.91 8.15 8.37 19.58 16.58 20.57 15.70 8.28 0.00 1.35 2.62 0.00 0.00 0.00 34 E3_Da NovelBoundary 1 27.34 0.00 1.83 16.88 14.60 0.00 4.24 2.30 5.06 0.00 10.06 12.00 45.78 4.94 10.26 7.35 12.25 4.23 8.38 5.62 2.97 0.00 4.35 35 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 0.00 6.49 5.77 6.30 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 Ix Intron 0 12.74 1.62 2.49 4.38 9.73 2.29 4.96 0.88 1.25 1.36 6.14 8.22 11.53 12.28 16.85 22.96 12.37 5.01 3.26 4.83 1.50 0.47 0.33 37 Ix_AR1 ActiveIntronRegion 0 9.40 1.96 3.52 4.71 7.75 0.71 5.37 1.00 0.36 1.65 4.47 9.84 15.70 12.66 19.19 21.24 12.12 3.20 3.69 4.52 1.28 0.81 0.00 38 Ix_SR1 SilentIntronRegion 0 17.70 1.13 1.02 3.96 12.68 4.60 4.43 0.72 2.56 0.95 8.62 5.96 5.61 11.87 13.65 25.68 12.88 7.68 2.66 5.34 1.84 0.00 0.82 39 E4_Aa NovelBoundary 0 17.86 3.03 0.00 8.79 15.79 2.50 10.07 2.46 1.22 3.01 7.90 11.70 24.84 14.24 14.09 24.95 25.90 4.64 0.00 15.34 3.15 0.00 0.00 40 ER4a ExonRegion 0 43.39 1.03 4.88 6.85 18.07 5.84 7.13 6.47 6.76 4.04 23.60 19.40 23.47 28.28 47.92 47.37 28.76 5.12 0.20 3.19 1.12 0.00 0.99 41 E4_Da KnownBoundary 0 44.75 0.00 5.41 2.93 12.22 5.56 12.32 1.68 6.13 0.00 14.42 30.91 29.71 12.36 4.45 37.94 11.78 5.14 4.71 0.00 0.00 0.00 0.00 42 ER4b ExonRegion 1 21.20 0.61 1.19 2.49 16.76 3.27 3.60 5.48 3.99 0.00 11.28 20.69 46.79 14.01 16.92 20.58 16.23 0.81 0.60 0.05 0.00 0.00 0.00