Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NCOA6 Gene 0 51.00 120.01 82.33 94.49 92.08 209.10 103.01 139.40 114.71 138.00 117.31 100.07 147.15 116.49 65.84 98.56 102.13 210.05 126.08 148.09 100.68 91.21 98.27 2 359003 Transcript 0 0.00 0.10 0.00 0.00 1.47 9.17 1.39 1.64 0.00 0.46 0.48 0.00 0.00 0.00 0.00 0.00 0.66 5.17 0.00 0.85 6.50 0.00 9.10 3 397669 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 2.49 0.00 0.00 0.00 6.66 1.30 2.60 2.09 1.82 0.95 0.00 0.00 0.00 0.00 2.18 4 374796 Transcript 0 3.80 6.67 1.73 3.44 5.46 9.01 7.32 6.88 5.35 6.31 2.17 2.51 3.95 4.58 4.82 6.00 6.02 18.34 7.18 7.10 3.56 2.53 5.15 5 397675 Transcript 0 0.53 6.78 2.50 4.43 3.01 9.93 7.50 8.79 6.95 7.50 8.86 13.71 12.31 6.02 3.51 3.34 5.36 10.86 4.65 8.78 5.05 3.39 3.55 6 471897 Transcript 0 3.60 2.95 4.12 3.55 2.64 4.68 7.45 3.38 2.61 2.34 0.67 0.54 2.26 0.29 0.90 1.62 0.31 1.25 2.00 1.55 0.89 0.73 2.98 7 ER1a ExonRegion 0 0.00 0.10 0.00 0.00 1.47 9.17 1.39 1.64 0.00 0.46 0.48 0.00 0.00 0.00 0.00 0.00 0.66 5.17 0.00 0.85 6.50 0.00 9.10 8 ER1b ExonRegion 0 1.37 5.20 2.07 2.82 4.96 18.84 10.23 8.60 8.09 5.04 12.80 2.16 10.36 14.25 4.35 6.60 10.13 23.37 13.23 12.04 18.19 5.75 19.70 9 E1a_E3a NovelJunction 0 0.00 0.00 0.00 1.40 0.00 0.00 0.00 1.81 2.81 4.49 0.00 0.00 0.00 12.36 4.82 3.67 0.00 7.25 4.71 2.94 3.03 0.00 0.00 10 E1a_E4a KnownJunction 0 0.00 14.41 7.51 7.49 20.37 2.50 9.54 14.33 20.89 17.14 40.69 17.41 58.11 19.19 9.39 15.12 29.08 16.08 23.53 23.14 21.25 13.66 38.41 11 I1_AR1 ActiveIntronRegion 0 3.09 11.07 13.73 7.74 3.48 1.95 29.74 4.28 6.86 2.80 3.25 6.94 2.75 2.06 5.43 3.54 8.75 7.71 11.22 10.10 5.95 0.00 4.29 12 E2_Aa NovelBoundary 0 405.11 475.90 378.02 471.57 463.84 316.47 515.03 392.42 420.71 335.51 243.54 193.86 182.29 179.82 133.63 551.14 402.80 603.93 473.14 535.18 242.35 221.18 401.55 13 ER2a ExonRegion 0 12.10 9.80 5.54 12.36 14.71 7.68 22.50 8.09 6.83 6.18 1.73 9.93 12.86 6.05 13.48 10.96 11.24 8.32 10.15 13.88 5.15 3.14 13.20 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 I2_AR1 ActiveIntronRegion 0 8.21 9.53 8.28 18.00 16.49 4.42 21.71 11.83 10.58 6.17 1.01 9.59 6.34 1.02 7.78 8.51 4.21 5.84 10.54 9.19 5.27 2.82 10.32 16 I2_AR2 ActiveIntronRegion 0 16.82 22.69 10.32 23.03 8.17 1.83 27.18 21.74 10.86 10.32 0.00 8.89 12.59 0.00 5.80 14.55 9.03 3.70 4.53 10.64 3.83 2.08 15.61 17 I2_AR3 ActiveIntronRegion 0 13.76 13.73 10.42 19.59 13.38 0.46 20.52 23.77 9.42 13.33 0.00 4.33 19.35 1.22 4.35 12.63 0.83 5.54 0.00 9.04 0.00 3.39 8.08 18 I2_AR4 ActiveIntronRegion 0 8.33 11.92 7.51 13.56 10.77 2.72 22.57 12.29 6.49 7.39 0.58 6.30 8.13 0.45 1.93 7.22 4.47 1.78 2.40 7.34 1.65 0.89 4.57 19 ER3a ExonRegion 0 3.08 7.87 1.37 1.40 3.40 14.49 6.77 7.16 5.75 5.08 6.96 0.12 2.95 5.45 5.80 5.10 9.29 20.17 8.96 6.02 3.02 4.17 3.65 20 E3a_E4a KnownJunction 0 0.00 9.01 0.00 0.00 3.74 13.86 0.00 12.28 8.83 12.44 0.00 0.00 0.00 6.83 0.00 7.95 3.55 44.85 9.60 8.50 6.05 2.82 3.76 21 ER4a ExonRegion 0 11.25 64.22 13.15 19.81 18.94 41.86 53.31 43.12 51.53 55.74 63.14 63.38 51.22 52.87 17.61 33.27 34.37 79.87 44.76 71.02 32.61 32.57 50.39 22 E4a_E5a KnownJunction 1 14.89 136.03 15.85 32.76 59.68 142.76 136.15 47.40 66.03 92.22 100.13 186.81 151.45 89.94 40.92 66.91 60.68 64.87 54.68 101.63 18.84 80.40 61.03 23 ER5a ExonRegion 1 16.79 138.35 40.45 71.62 64.37 154.14 144.09 121.22 144.76 148.49 163.03 257.12 261.21 123.42 43.28 67.04 124.20 115.78 87.20 176.95 51.66 121.19 83.15 24 E5a_E8b KnownJunction 0 21.19 162.73 59.73 55.04 76.83 281.03 186.59 154.27 170.02 172.88 196.94 279.09 305.01 148.16 80.47 85.79 126.88 196.28 90.83 186.89 106.32 87.38 79.47 25 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER7a ExonRegion 0 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.86 0.46 0.57 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 27 ER8a ExonRegion 0 1.59 20.34 7.51 12.78 9.03 29.80 22.51 25.49 20.38 21.93 26.58 40.59 36.93 18.07 10.52 10.03 16.09 32.10 13.94 26.33 15.15 10.16 10.65 28 ER8b ExonRegion 1 30.42 131.62 52.08 69.44 51.03 145.30 108.45 132.03 149.97 144.27 164.80 272.37 256.74 193.85 53.96 90.87 144.86 276.88 167.45 214.06 170.08 134.78 110.66 29 E8a_E9a KnownJunction 1 29.49 108.20 50.23 53.31 52.12 194.43 72.25 136.16 157.90 160.66 193.84 274.44 305.66 208.72 47.84 139.28 160.64 324.33 138.73 253.30 165.63 111.02 85.70 30 ER9a ExonRegion 0 35.38 89.86 43.87 50.95 60.91 202.05 124.33 121.60 162.00 139.55 173.62 196.48 234.84 193.98 62.95 118.57 173.98 364.44 214.66 201.21 175.94 133.33 124.20 31 E9_Da NovelBoundary 0 22.82 20.92 5.62 16.58 0.00 7.95 26.45 8.83 1.74 5.91 0.00 6.30 13.64 0.00 4.45 14.87 4.49 3.98 9.60 12.46 14.21 3.12 17.07 32 E9a_E10a KnownJunction 0 24.00 109.13 29.89 61.16 90.75 222.66 170.25 117.96 133.85 128.53 112.13 157.10 208.75 191.18 62.55 136.89 157.46 353.64 279.26 127.71 131.46 254.92 127.02 33 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.98 0.00 0.00 0.00 13.31 2.30 5.19 4.19 3.65 1.91 0.00 0.00 0.00 0.00 4.35 34 I9_AR1 ActiveIntronRegion 0 11.59 16.59 5.95 17.43 14.23 5.81 17.30 6.72 7.49 5.38 0.64 7.33 11.37 0.49 3.23 2.82 8.34 1.22 3.63 8.61 1.52 1.53 4.51 35 E10_Aa NovelBoundary 0 78.75 8.16 8.22 17.41 48.22 21.75 41.56 6.74 9.69 5.08 6.53 12.00 26.78 9.06 10.75 7.78 16.74 8.42 3.86 8.56 13.10 13.23 12.29 36 ER10a ExonRegion 0 20.66 86.07 30.83 47.65 61.02 232.57 112.22 115.12 154.15 165.45 195.27 171.57 302.45 196.44 65.87 132.92 182.50 400.93 197.67 201.53 175.75 125.95 136.06 37 E10a_E11a KnownJunction 1 6.89 65.98 30.45 60.10 34.47 204.31 58.21 138.75 149.71 159.77 149.93 267.99 402.08 212.96 85.54 199.78 168.96 537.53 197.28 210.03 123.62 63.38 166.63 38 I10 Intron 0 13.49 10.90 6.07 16.14 8.41 4.57 23.76 9.53 5.79 5.37 3.04 12.46 23.83 1.77 6.33 5.50 8.87 5.43 6.18 11.83 3.27 3.66 7.33 39 I10_SR1 SilentIntronRegion 0 13.54 10.94 6.10 16.20 8.43 4.59 23.85 9.56 5.81 5.39 3.05 12.51 23.92 1.78 6.35 5.52 8.90 5.45 6.20 11.87 3.28 3.67 7.35 40 ER11a ExonRegion 0 30.74 58.64 35.98 62.28 40.26 141.68 71.70 105.08 126.76 144.01 155.56 161.55 283.33 170.78 71.66 110.24 158.30 319.31 157.46 229.02 162.54 113.74 123.54 41 E11_Da KnownBoundary 1 24.08 68.15 44.29 43.78 40.41 108.35 78.92 90.73 98.12 108.87 120.71 30.31 151.78 131.91 22.25 80.92 95.75 195.95 148.24 142.66 134.18 57.19 77.42 42 ER11b ExonRegion 0 20.35 68.12 43.86 55.46 48.37 142.96 75.38 98.05 97.32 116.84 114.77 68.61 113.56 145.09 45.40 103.87 104.09 237.70 117.13 154.85 125.94 81.17 88.97 43 E11b_E13a KnownJunction 0 9.56 56.44 26.64 27.97 24.11 120.50 54.01 79.60 66.98 89.32 85.28 41.86 64.12 111.72 49.08 59.98 71.44 88.25 57.98 105.78 80.99 48.19 55.14 44 I11 Intron 0 6.78 9.98 3.11 24.35 7.05 6.63 22.16 10.65 9.32 5.92 3.10 12.76 16.80 1.53 3.68 4.61 4.95 3.85 6.09 10.99 1.25 3.66 3.49 45 I11_SR1 SilentIntronRegion 0 7.85 13.58 2.32 22.89 4.08 4.58 17.23 6.36 8.26 4.59 2.00 8.63 14.22 0.83 3.62 2.33 5.83 2.64 4.26 9.50 1.26 2.52 3.87 46 I11_AR1 ActiveIntronRegion 0 10.16 6.30 4.60 29.10 7.09 13.30 29.59 13.40 7.10 4.36 1.74 3.90 28.84 3.98 2.47 1.78 10.23 0.00 3.19 4.36 0.22 5.73 2.94 47 I11_AR2 ActiveIntronRegion 0 6.92 9.45 4.99 30.37 10.73 8.88 26.37 18.40 9.96 7.84 3.98 20.68 19.64 2.38 3.93 7.69 4.22 6.77 7.47 14.87 0.79 6.46 2.98 48 I11_SR2 SilentIntronRegion 0 3.70 2.90 1.50 16.68 7.58 6.77 25.65 6.71 11.05 5.86 4.27 9.50 16.62 1.41 3.54 4.83 3.62 1.96 8.37 8.46 2.20 1.14 3.60 49 ER12a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 I12 Intron 0 6.55 8.38 5.65 16.25 9.46 4.59 22.16 6.95 10.12 5.54 2.56 8.53 11.25 2.18 3.21 5.84 9.56 5.91 8.29 9.92 3.78 3.27 5.19 51 I12_SR1 SilentIntronRegion 0 6.56 8.41 5.66 16.30 9.48 4.60 22.22 6.97 10.15 5.55 2.57 8.55 11.29 2.18 3.22 5.85 9.58 5.92 8.31 9.95 3.79 3.28 5.20 52 ER13a ExonRegion 0 20.01 88.38 39.35 53.55 49.09 183.90 92.42 108.92 119.85 119.85 121.77 81.52 70.89 129.64 59.23 110.80 109.00 212.33 136.67 168.32 139.04 78.62 95.49 53 E13a_E14a KnownJunction 0 13.85 75.64 53.31 50.81 79.63 263.77 164.51 147.29 117.56 136.59 163.30 82.23 91.39 149.98 53.77 122.02 126.13 284.41 142.40 185.49 147.83 88.42 71.11 54 ER14a ExonRegion 0 40.30 114.66 62.16 91.45 81.48 230.71 123.48 164.39 150.20 170.54 162.97 123.67 153.68 166.75 66.71 143.76 134.91 346.04 198.82 215.32 146.80 121.15 141.53 55 E14a_E15a KnownJunction 1 39.34 256.86 116.20 144.24 107.89 401.25 136.02 225.83 224.10 273.99 155.04 364.02 416.86 230.09 65.52 254.80 148.95 472.82 335.35 286.03 128.99 223.44 230.82 56 ER15a ExonRegion 0 44.29 167.77 88.99 113.63 67.29 225.18 116.43 225.21 196.63 260.85 227.46 284.22 309.70 208.87 98.74 143.86 180.52 373.17 219.58 258.68 179.11 163.66 186.77 57 E15a_E16a KnownJunction 0 24.00 108.93 59.37 69.55 63.41 207.61 46.68 153.08 175.46 218.20 168.99 236.63 386.01 165.99 84.18 117.58 161.29 280.68 133.27 241.48 183.85 124.12 112.00 58 E15a_E17a NovelJunction 0 3.56 21.38 12.65 4.83 15.87 37.99 29.06 12.49 16.15 18.64 0.00 12.00 0.00 4.89 10.38 4.02 3.55 2.57 9.22 3.00 0.00 0.00 0.00 59 ER16a ExonRegion 0 83.20 207.39 154.16 162.42 150.85 400.16 158.34 244.09 187.87 243.08 193.92 145.73 248.06 186.24 106.21 173.80 164.84 352.63 210.63 233.56 168.29 154.03 167.37 60 E16a_E17a KnownJunction 0 118.10 204.17 181.31 124.29 182.00 430.60 107.05 155.01 114.21 152.66 119.71 29.26 54.22 106.19 84.68 70.32 105.56 192.92 179.30 116.46 74.50 56.52 88.44 61 I16 Intron 0 9.06 13.69 4.30 16.23 13.50 17.40 23.24 10.11 10.86 8.86 6.76 13.58 17.11 7.55 5.96 9.05 10.75 8.31 9.17 15.79 7.91 10.11 9.99 62 I16_SR1 SilentIntronRegion 0 7.56 13.20 3.08 13.64 12.61 18.39 22.88 9.22 9.49 7.59 7.88 13.02 18.12 8.89 6.25 9.47 13.47 9.56 10.74 16.39 8.71 10.11 10.24 63 I16_AR1 ActiveIntronRegion 0 8.39 12.63 5.13 23.34 16.28 18.11 23.15 11.51 16.82 10.62 6.29 17.44 17.24 6.27 5.59 10.67 6.90 6.59 5.41 16.86 5.30 10.59 11.32 64 I16_SR2 SilentIntronRegion 0 15.12 16.61 7.76 18.01 13.78 13.27 24.73 11.82 9.47 11.55 3.34 11.58 13.48 4.23 5.37 5.92 5.26 5.74 7.62 12.66 7.90 9.65 7.74 65 E17_Aa NovelBoundary 0 36.75 26.31 6.62 26.94 29.97 20.44 21.55 20.50 11.75 11.47 14.79 0.00 14.93 2.12 8.90 15.89 3.83 15.88 18.26 33.36 18.59 13.90 15.79 66 ER17a ExonRegion 1 155.06 268.79 176.40 164.85 180.05 387.76 145.98 193.96 123.51 152.74 133.15 38.15 77.08 125.76 119.46 86.62 107.54 208.15 136.19 128.95 101.02 79.32 101.68 67 E17a_E18b KnownJunction 0 158.32 306.46 176.28 169.11 210.44 400.28 175.37 196.50 132.26 152.50 131.82 55.82 68.50 109.07 131.65 75.88 96.68 171.62 75.39 143.94 100.57 80.83 71.71 68 ER18a ExonRegion 0 3.60 2.95 4.12 3.55 2.64 4.68 7.45 3.38 2.61 2.34 0.67 0.54 2.26 0.29 0.90 1.62 0.31 1.25 2.00 1.55 0.89 0.73 2.98 69 E18_Ab KnownBoundary 0 13.26 0.00 3.34 0.00 3.65 9.09 7.73 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 9.27 0.00 2.27 0.00 70 ER18b ExonRegion 1 130.11 270.18 258.25 184.07 177.71 385.05 184.55 211.16 154.39 188.98 129.13 29.83 79.47 82.33 123.38 84.79 82.80 185.19 106.71 128.49 101.06 71.24 58.08 71 E18_Da NovelBoundary 0 48.75 10.06 10.53 27.67 12.65 5.22 27.16 21.85 8.28 14.85 7.69 13.95 0.00 12.77 13.35 21.45 8.70 18.65 16.57 27.55 36.88 2.94 28.60 72 E18a_E19a KnownJunction 1 134.02 315.86 281.86 192.08 248.81 534.29 294.87 207.47 157.67 181.02 118.56 75.92 107.79 74.28 171.83 105.02 92.75 180.78 153.32 131.54 92.73 73.60 77.42 73 E18a_E20a NovelJunction 0 0.00 3.35 5.26 3.40 0.00 5.62 4.24 2.55 2.69 4.51 0.00 5.40 0.00 2.35 4.45 0.00 0.00 1.95 0.00 0.00 8.71 8.57 10.59 74 I18 Intron 0 25.61 29.93 10.51 30.29 23.33 19.25 22.89 15.84 15.41 13.08 3.96 10.18 11.66 7.16 7.76 12.70 7.83 11.53 10.46 16.13 6.69 10.24 9.93 75 I18_SR1 SilentIntronRegion 0 18.81 19.17 8.35 24.29 20.44 18.83 23.39 13.35 14.08 10.81 4.19 9.63 12.38 6.90 7.33 13.25 9.12 12.65 12.04 16.62 7.24 8.60 8.71 76 I18_AR1 ActiveIntronRegion 0 45.73 59.34 17.05 52.91 32.60 20.69 22.85 22.19 19.82 21.72 2.64 11.27 10.61 8.27 9.18 12.11 4.50 5.41 6.97 16.20 4.02 16.58 13.31 77 I18_SR2 SilentIntronRegion 0 53.95 77.10 22.10 28.91 31.26 19.24 26.15 31.29 22.73 15.75 6.95 10.86 8.80 11.25 8.30 9.80 2.37 25.22 2.18 11.87 12.84 11.19 8.81 78 I18_AR2 ActiveIntronRegion 0 22.98 40.22 6.28 18.15 21.24 19.79 8.83 17.50 10.29 5.30 5.03 15.19 4.76 2.17 7.97 6.79 5.34 15.34 4.96 8.48 6.72 4.80 16.97 79 E19_Aa NovelBoundary 0 39.71 57.56 34.98 57.57 34.55 13.06 28.13 39.27 33.82 19.50 9.69 12.00 0.00 7.30 22.25 15.98 8.42 14.92 9.22 14.57 6.30 8.27 31.58 80 ER19a ExonRegion 0 157.38 317.92 313.17 274.81 290.31 504.87 238.22 304.50 201.13 231.39 154.27 80.55 103.90 153.59 162.80 154.17 118.54 235.88 154.44 190.82 118.69 136.44 130.47 81 E19a_E20a KnownJunction 0 217.52 261.60 273.70 280.72 338.03 497.21 228.41 361.12 200.63 255.38 121.61 48.62 118.82 149.16 176.90 102.20 128.75 209.84 98.83 203.19 79.01 103.91 120.36 82 I19_AR2 ActiveIntronRegion 0 9.17 16.56 8.01 20.51 9.14 5.56 14.41 10.30 9.73 10.17 1.72 5.25 4.02 0.52 2.22 5.40 4.96 3.78 2.36 10.04 1.92 2.99 6.39 83 ER20a ExonRegion 0 214.31 361.28 260.16 295.78 390.37 427.48 249.53 355.61 211.12 252.83 149.88 113.68 123.24 131.50 171.12 104.26 114.87 136.15 143.02 177.37 69.91 125.71 104.16 84 E20_Da KnownBoundary 1 156.18 425.58 344.99 383.70 290.32 365.87 287.10 380.88 209.69 243.56 140.25 97.68 121.26 126.73 185.92 57.59 125.29 64.42 90.73 169.96 58.94 138.20 47.89 85 ER20b ExonRegion 0 98.99 186.68 148.43 171.90 197.44 154.28 133.39 170.26 94.80 101.36 59.13 58.68 77.65 45.65 86.16 27.94 38.66 20.62 38.92 76.47 11.03 70.43 22.51