Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BCL2L1 Gene 0 159.12 127.84 135.82 80.73 81.12 152.17 67.69 129.11 131.57 145.66 299.76 56.59 60.71 150.88 279.93 215.67 272.29 142.60 149.47 112.11 251.25 169.21 133.82 2 439267 Transcript 0 6.59 0.00 1.83 5.89 7.39 12.38 5.96 6.24 4.51 2.69 7.21 0.00 0.00 0.00 15.95 0.00 13.09 5.80 19.86 5.62 19.15 2.57 0.00 3 420488 Transcript 0 6.82 5.46 3.67 1.86 3.23 8.52 5.79 0.00 0.00 2.93 2.68 0.00 0.00 0.00 4.45 4.27 8.98 0.00 3.48 0.00 3.09 0.00 0.00 4 456404 Transcript 0 0.00 0.00 1.42 1.53 0.00 0.00 0.00 0.00 2.60 2.69 4.69 0.00 0.00 23.78 8.90 4.36 0.00 21.35 4.61 6.52 8.22 8.21 11.61 5 450273 Transcript 0 0.00 2.70 1.21 2.93 0.00 4.88 0.00 3.86 5.93 10.23 11.53 0.00 0.00 19.19 13.35 22.99 25.90 34.57 44.80 11.63 10.81 13.84 15.37 6 422920 Transcript 1 4.54 5.27 10.72 3.94 3.84 12.72 8.95 16.63 17.10 18.02 61.54 12.02 1.00 31.24 19.56 29.12 32.84 20.03 22.15 27.50 24.53 16.58 6.77 7 420653 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 307677 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 376055 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 376062 Transcript 1 20.21 3.01 2.18 3.28 7.56 4.58 4.46 5.98 7.31 14.36 105.57 9.43 5.99 15.27 27.39 42.99 100.89 5.45 4.08 7.52 8.74 5.67 2.66 11 434194 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 376060 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 ER1a ExonRegion 0 0.06 1.47 1.57 0.68 4.24 6.32 1.69 0.53 0.96 1.56 2.20 0.00 3.65 2.44 2.42 3.47 0.46 2.26 4.96 4.08 2.26 0.17 0.49 14 E1_Ab KnownBoundary 0 0.00 3.35 2.84 3.06 7.22 14.08 2.25 2.22 1.59 2.47 2.32 0.00 8.28 2.47 0.00 8.12 0.00 7.83 13.55 9.08 4.82 0.00 0.00 15 ER1b ExonRegion 0 25.01 19.28 7.08 4.16 39.69 102.52 41.04 8.83 12.05 17.16 55.20 0.00 5.04 62.71 32.50 41.00 56.24 31.72 57.04 28.45 55.34 19.10 38.12 16 E1_Ac KnownBoundary 0 48.23 33.02 11.80 11.22 39.81 138.44 51.89 20.87 21.35 26.67 63.07 0.00 13.15 44.15 18.91 44.09 78.17 57.45 62.78 25.63 51.21 18.98 21.51 17 ER1c ExonRegion 0 46.68 25.53 11.20 7.80 24.82 86.70 42.59 10.51 15.40 18.29 30.44 0.00 6.38 26.53 20.63 21.96 51.16 37.52 49.90 17.02 41.69 12.10 13.05 18 E1_Da KnownBoundary 0 37.41 18.29 5.38 1.60 3.65 29.98 21.29 7.48 7.75 5.45 0.00 0.00 0.00 12.42 4.45 7.95 8.98 41.04 3.67 0.00 4.88 0.00 8.62 19 E1a_E3c KnownJunction 0 6.82 5.46 3.67 1.86 3.23 8.52 5.79 0.00 0.00 2.93 2.68 0.00 0.00 0.00 4.45 4.27 8.98 0.00 3.48 0.00 3.09 0.00 0.00 20 E1a_E3d KnownJunction 0 6.59 0.00 1.83 5.89 7.39 12.38 5.96 6.24 4.51 2.69 7.21 0.00 0.00 0.00 15.95 0.00 13.09 5.80 19.86 5.62 19.15 2.57 0.00 21 ER1d ExonRegion 0 4.51 4.32 3.56 1.20 0.27 7.16 5.67 2.93 6.01 7.00 12.72 3.12 1.56 15.18 8.97 5.76 16.84 17.46 7.51 8.46 16.49 8.08 4.67 22 E1b_E3c KnownJunction 0 0.00 0.00 1.42 1.53 0.00 0.00 0.00 0.00 2.60 2.69 4.69 0.00 0.00 23.78 8.90 4.36 0.00 21.35 4.61 6.52 8.22 8.21 11.61 23 E1b_E3d KnownJunction 0 0.00 2.70 1.21 2.93 0.00 4.88 0.00 3.86 5.93 10.23 11.53 0.00 0.00 19.19 13.35 22.99 25.90 34.57 44.80 11.63 10.81 13.84 15.37 24 ER2a ExonRegion 1 4.54 5.27 10.72 3.94 3.84 12.72 8.95 16.63 17.10 18.02 61.54 12.02 1.00 31.24 19.56 29.12 32.84 20.03 22.15 27.50 24.53 16.58 6.77 25 E2_Ab KnownBoundary 0 3.63 9.34 2.81 1.60 0.00 8.23 1.72 11.05 5.03 7.74 24.27 0.00 0.00 7.30 0.00 27.26 16.64 8.17 0.00 15.85 5.25 5.51 0.00 26 E2_Ac KnownBoundary 0 12.37 28.48 3.96 3.33 18.51 70.19 12.23 4.39 6.74 5.56 33.38 5.70 0.00 6.77 13.23 42.89 34.60 29.68 76.05 14.06 16.62 24.74 16.39 27 ER2b ExonRegion 0 13.76 23.39 16.54 8.86 8.03 60.06 12.25 17.28 9.26 14.05 49.77 8.66 0.00 28.83 29.01 44.58 49.51 18.48 43.00 19.15 25.34 30.73 13.21 28 ER2c ExonRegion 0 37.71 29.22 17.35 12.09 11.20 86.00 23.80 23.52 18.07 20.80 71.21 10.60 3.83 32.35 61.31 52.79 62.54 20.57 66.39 23.12 49.93 46.50 39.80 29 E2_Ad KnownBoundary 0 47.56 29.93 26.55 15.58 11.04 82.28 30.34 36.35 24.91 35.08 80.34 12.45 6.82 26.49 69.23 38.88 56.47 43.94 57.88 23.84 67.77 43.41 73.24 30 ER2d ExonRegion 0 49.31 25.53 44.02 19.14 23.20 71.34 31.41 50.10 49.19 69.92 113.13 11.77 7.64 57.66 57.80 67.49 105.70 80.64 83.49 53.07 189.12 112.63 98.54 31 E2a_E3c KnownJunction 0 20.67 14.27 28.21 16.51 19.52 20.73 8.57 35.65 26.65 50.37 84.02 5.85 6.82 14.13 43.76 52.81 71.90 66.74 28.99 19.69 80.68 64.79 103.12 32 E2a_E3d KnownJunction 0 17.19 32.63 33.09 24.01 28.86 41.28 19.87 51.01 62.82 68.18 110.03 6.30 6.49 44.21 44.38 42.47 76.86 73.21 42.92 52.35 104.96 74.77 77.60 33 ER3a ExonRegion 0 12.53 3.70 0.00 1.25 0.21 0.15 1.91 0.00 0.79 4.77 9.66 0.00 1.13 0.94 3.71 7.37 11.16 1.96 4.01 2.85 1.85 3.46 2.06 34 E3_Ab KnownBoundary 0 28.38 18.09 0.00 3.43 0.00 2.10 3.44 2.14 2.46 14.10 28.32 0.00 6.82 2.12 8.90 20.76 15.24 4.39 8.94 8.56 8.46 8.21 4.35 35 ER3b ExonRegion 1 78.11 6.20 1.79 1.72 11.68 23.89 16.49 3.92 10.45 21.18 190.30 10.74 26.25 48.68 87.65 120.94 228.36 7.41 7.44 16.41 17.46 13.66 7.65 36 E3_Da KnownBoundary 1 63.42 5.33 9.34 5.49 3.23 7.72 9.23 10.15 2.20 9.27 92.34 23.26 63.63 27.84 53.16 47.51 143.34 1.87 0.00 0.00 11.74 0.00 0.00 37 E3a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER3c ExonRegion 1 27.89 2.31 4.35 5.31 14.91 9.02 7.01 11.96 13.83 23.95 201.48 18.85 10.85 29.61 51.07 78.61 190.63 8.95 4.15 12.19 15.63 7.88 3.27 39 E3_Ac KnownBoundary 0 3.41 3.22 1.63 0.00 20.54 0.00 3.97 0.00 7.99 9.91 92.39 6.30 13.47 21.84 43.39 51.18 116.60 4.23 14.31 24.54 6.05 14.57 4.35 40 E3_Ad KnownBoundary 0 23.86 17.56 25.52 27.14 21.99 19.93 21.20 32.57 51.56 43.01 130.24 24.61 34.74 67.22 89.62 117.92 69.10 80.79 38.78 35.28 64.80 52.60 52.07 41 ER3d ExonRegion 0 23.99 16.61 38.05 25.14 26.46 34.03 24.42 45.23 55.58 65.63 202.31 16.12 42.73 91.58 117.50 158.84 167.61 98.75 56.98 53.19 100.15 78.94 101.64 42 ER3e ExonRegion 0 38.89 71.01 103.14 79.97 82.85 211.89 81.42 144.91 161.12 171.65 467.42 88.99 78.43 193.07 259.84 335.74 456.29 194.69 247.15 128.78 289.30 192.69 182.36 43 E3_Ae KnownBoundary 0 93.57 106.43 149.31 84.01 118.17 351.96 123.66 152.43 192.71 202.06 491.49 94.08 71.75 257.23 383.83 385.63 426.83 176.38 227.21 152.19 324.08 196.99 143.32 44 ER3f ExonRegion 0 138.16 88.19 125.35 92.16 104.28 233.30 90.67 174.67 187.49 202.89 428.68 96.56 87.33 201.26 283.76 291.49 410.29 197.90 228.16 151.18 381.45 223.25 184.46 45 E3_Db KnownBoundary 0 219.22 71.57 151.95 99.99 74.70 267.69 82.41 160.89 200.37 198.40 486.28 124.09 94.64 191.95 359.23 315.81 442.17 268.12 325.28 150.01 462.96 289.27 244.74 46 ER3g ExonRegion 0 152.07 96.69 142.81 77.00 64.94 177.89 80.39 152.31 156.77 177.44 390.56 82.37 89.66 199.50 334.34 240.43 385.17 207.59 169.33 153.46 382.41 207.11 159.12 47 E3_Dc KnownBoundary 0 231.67 149.25 195.23 120.23 95.25 276.72 149.58 201.18 187.24 246.81 428.69 101.13 97.56 292.19 436.62 283.09 484.71 279.23 226.17 223.39 371.41 193.25 178.49 48 E3c_E4a KnownJunction 0 10.67 15.85 17.09 8.92 3.48 21.24 14.09 33.02 15.86 5.10 29.17 12.60 0.00 6.89 16.32 12.13 26.55 8.58 28.71 15.15 16.87 9.06 15.45 49 ER3h ExonRegion 0 145.64 140.43 174.98 116.92 90.62 233.14 82.58 199.13 183.30 218.49 407.54 86.80 93.10 219.57 391.55 324.03 415.15 264.68 187.31 201.81 395.59 240.20 193.03 50 E3_Dd NovelBoundary 0 65.34 133.73 177.64 147.17 66.89 202.38 59.84 162.65 140.45 175.44 280.18 66.47 71.91 160.99 445.52 270.87 269.66 301.08 176.10 193.67 263.85 232.69 194.37 51 E3e_E4a KnownJunction 0 82.09 86.76 135.12 100.45 45.33 221.41 93.27 108.56 106.94 125.88 273.33 49.82 110.71 154.98 346.50 159.10 406.83 104.05 185.04 81.30 277.26 204.83 99.96 52 ER3i ExonRegion 0 64.40 99.26 130.65 105.98 44.72 211.50 67.52 124.86 114.04 131.18 294.44 76.69 96.48 163.57 391.95 217.81 373.00 137.17 182.78 133.94 289.74 227.80 129.49 53 Ix_AR4 ActiveIntronRegion 0 16.71 8.36 11.10 7.56 19.48 4.57 14.33 15.30 17.14 10.35 2.74 8.27 10.13 3.73 10.31 28.08 27.67 13.60 7.29 19.91 12.65 0.71 20.09 54 Ix_SR3 SilentIntronRegion 0 16.88 5.71 3.58 5.52 13.26 2.51 9.29 8.03 7.03 5.22 1.23 4.80 15.14 4.16 9.27 11.94 13.72 6.08 4.17 12.77 6.28 1.20 9.89 55 Ix_AR3 ActiveIntronRegion 0 15.08 2.54 4.37 17.55 8.70 11.92 9.85 9.18 7.87 13.62 1.93 8.66 6.16 7.41 10.88 20.06 9.70 15.59 4.38 13.83 9.50 5.99 10.46 56 Ix_AR2 ActiveIntronRegion 0 27.80 7.72 7.20 11.63 20.97 5.42 13.03 17.46 11.72 9.68 2.41 8.79 11.57 6.58 11.29 25.85 21.08 9.38 5.07 16.10 10.20 1.71 14.34 57 Ix_AR1 ActiveIntronRegion 0 44.71 6.50 6.01 9.64 31.06 6.38 10.85 19.81 13.46 9.60 2.75 32.25 17.15 11.56 11.90 27.51 19.08 8.24 2.45 19.26 3.51 1.78 13.54 58 Ix_SR1 SilentIntronRegion 0 39.72 15.77 12.03 12.23 44.23 6.92 18.98 20.40 13.49 11.73 1.71 28.20 9.95 10.01 15.84 39.31 19.46 11.34 7.89 27.62 8.55 2.75 13.74 59 I3_AR1 ActiveIntronRegion 0 13.76 4.07 4.90 6.39 19.90 8.60 7.94 13.72 12.97 15.05 3.99 10.01 0.00 5.68 8.70 18.95 11.76 11.09 19.11 15.43 9.64 2.08 8.81 60 I3_SR2 SilentIntronRegion 0 22.66 4.56 2.60 4.54 8.62 2.74 8.72 9.65 7.63 4.93 3.51 14.45 10.69 5.85 11.58 17.31 11.51 9.04 0.82 14.70 7.94 2.14 7.49 61 I3_AR3 ActiveIntronRegion 0 23.16 7.38 11.55 8.03 22.15 8.65 13.96 14.59 15.99 9.64 4.94 20.58 24.54 7.97 17.46 18.65 23.68 12.98 3.26 19.57 6.36 2.06 15.12 62 I3_SR3 SilentIntronRegion 0 15.77 1.42 3.79 1.41 4.19 2.87 8.88 12.90 9.49 6.19 3.36 15.40 8.16 9.10 9.02 24.66 28.94 6.24 3.34 13.27 7.95 4.35 11.66 63 I3_AR8 ActiveIntronRegion 0 25.55 1.24 6.05 4.02 15.05 3.07 10.79 14.86 15.12 8.71 3.73 23.73 20.10 10.39 9.93 28.38 19.41 14.09 4.14 15.68 8.27 1.40 10.53 64 I3_SR4 SilentIntronRegion 0 21.81 3.16 4.00 5.20 9.10 4.42 8.88 10.15 11.37 8.78 3.11 18.88 13.01 7.22 12.43 23.81 17.99 13.08 5.14 16.88 10.66 3.01 14.76 65 I3_AR12 ActiveIntronRegion 0 8.12 6.23 6.48 15.88 6.66 9.17 7.11 11.99 19.08 7.86 4.65 12.46 21.54 2.62 4.74 24.99 26.07 22.25 2.80 26.44 17.18 7.31 18.76 66 ER4a ExonRegion 0 145.27 96.09 176.10 85.02 75.13 237.16 86.18 155.20 150.85 171.33 446.24 77.01 131.32 188.74 396.47 253.03 518.94 145.26 188.00 188.42 336.45 234.56 144.86 67 E4_Da KnownBoundary 0 271.83 131.95 255.08 100.65 108.06 233.90 83.20 220.90 227.34 254.57 418.84 104.58 114.12 186.24 436.25 242.93 565.22 210.83 159.44 239.82 313.58 219.71 177.13 68 ER4b ExonRegion 0 257.08 214.43 209.70 122.86 124.63 198.69 92.73 182.39 185.63 200.18 381.02 73.17 80.70 200.60 410.08 289.61 324.86 181.86 200.00 144.08 319.22 230.70 180.46 69 ER4c ExonRegion 0 5.03 5.59 0.77 1.36 2.34 8.25 4.96 3.89 2.16 1.72 2.66 0.00 0.00 0.41 4.35 2.23 3.71 0.23 3.19 4.26 6.06 0.00 2.57